Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01032176001 Vitis vinifera HOM05D000089 ORTHO05D011784 4.5e-16 86.7 40 100.0
GSVIVG01010695001 Vitis vinifera HOM05D000089 ORTHO05D000104 1.9e-14 81.3 39 94.9
GSVIVG01027237001 Vitis vinifera HOM05D000089 ORTHO05D000104 1.9e-14 81.3 39 94.9
GSVIVG01027246001 Vitis vinifera HOM05D000089 ORTHO05D000104 1.9e-14 81.3 39 94.9
GSVIVG01027307001 Vitis vinifera HOM05D000089 ORTHO05D000104 9.5e-14 79.0 39 92.3
GSVIVG01012385001 Vitis vinifera HOM05D000089 ORTHO05D011784 4.7e-13 76.6 40 85.0
RcHm_v2.0_Chr1g0317461 Rosa chinensis HOM05D000089 ORTHO05D000104 1.8e-09 64.7 40 75.0
FAN03G3098 Fragaria x ananassa HOM05D000089 ORTHO05D000104 3.2e-09 63.9 40 72.5
GSVIVG01012378001 Vitis vinifera HOM05D000089 ORTHO05D000104 4.1e-09 63.5 39 76.9
GSVIVG01012383001 Vitis vinifera HOM05D000089 ORTHO05D000104 4.1e-09 63.5 39 76.9
RcHm_v2.0_Chr1g0317681 Rosa chinensis HOM05D000089 ORTHO05D000104 9.2e-09 62.4 40 72.5
GSVIVG01010696001 Vitis vinifera HOM05D000089 ORTHO05D000104 1.2e-08 62.0 37 78.4
GSVIVG01027236001 Vitis vinifera HOM05D000089 ORTHO05D000104 1.2e-08 62.0 37 78.4
Manes.07G009140 Manihot esculenta HOM05D000089 ORTHO05D000104 1.0e-07 58.9 39 61.5
Manes.07G009300 Manihot esculenta HOM05D000089 ORTHO05D000104 1.0e-07 58.9 39 61.5
Manes.07G009913 Manihot esculenta HOM05D000089 ORTHO05D000104 1.0e-07 58.9 39 61.5
RcHm_v2.0_Chr1g0316841 Rosa chinensis HOM05D000089 ORTHO05D000104 1.0e-07 58.9 40 67.5
RcHm_v2.0_Chr1g0317691 Rosa chinensis HOM05D000089 ORTHO05D000104 1.0e-07 58.9 40 67.5
RcHm_v2.0_Chr1g0317661 Rosa chinensis HOM05D000089 ORTHO05D000104 1.7e-07 58.2 40 67.5
GSVIVG01027306001 Vitis vinifera HOM05D000089 ORTHO05D000104 1.7e-07 58.2 37 73.0
CiPaw.13G043800 Carya illinoinensis HOM05D000089 ORTHO05D000104 2.3e-07 57.8 39 71.8
Duzib106G0092 Durio zibethinus HOM05D000089 ORTHO05D000104 2.3e-07 57.8 40 70.0
Prupe.2G021600 Prunus persica HOM05D000089 ORTHO05D000104 2.3e-07 57.8 40 72.5
Thecc.05G218300 Theobroma cacao HOM05D000089 ORTHO05D000104 2.3e-07 57.8 40 65.0
Manes.10G138309 Manihot esculenta HOM05D000089 ORTHO05D000104 3.0e-07 57.4 37 70.3
Thecc.05G217900 Theobroma cacao HOM05D000089 ORTHO05D000104 3.0e-07 57.4 40 65.0
FvH4_7g01564 Fragaria vesca HOM05D000089 ORTHO05D000104 3.9e-07 57.0 40 65.0
FAN06G3178 Fragaria x ananassa HOM05D000089 ORTHO05D000104 3.9e-07 57.0 40 65.0
RcHm_v2.0_Chr1g0317331 Rosa chinensis HOM05D000089 ORTHO05D000104 3.9e-07 57.0 40 67.5
Duzib177G1191 Durio zibethinus HOM05D000089 ORTHO05D000104 5.0e-07 56.6 38 63.2
FAN01G0018 Fragaria x ananassa HOM05D000089 ORTHO05D000104 5.0e-07 56.6 40 67.5
FAN10G0335 Fragaria x ananassa HOM05D000089 ORTHO05D000104 5.0e-07 56.6 40 67.5
Gohir.D03G053000 Gossypium hirsutum HOM05D000089 ORTHO05D000104 5.0e-07 56.6 39 71.8
Gorai.003G055000 Gossypium raimondii HOM05D000089 ORTHO05D000104 5.0e-07 56.6 39 71.8
MD02G1302800 Malus domestica HOM05D000089 ORTHO05D000104 5.0e-07 56.6 40 70.0
RcHm_v2.0_Chr1g0317701 Rosa chinensis HOM05D000089 ORTHO05D000104 5.0e-07 56.6 40 67.5
COL.COLO4_15212 Corchorus olitorius HOM05D000089 ORTHO05D000104 6.6e-07 56.2 40 62.5
FvH4_7g01580 Fragaria vesca HOM05D000089 ORTHO05D000104 6.6e-07 56.2 40 65.0
Manes.07G009600 Manihot esculenta HOM05D000089 ORTHO05D000104 6.6e-07 56.2 39 59.0
QL12p000614 Quercus lobata HOM05D000089 ORTHO05D000104 6.6e-07 56.2 40 70.0
Hund07494 Selenicereus undatus HOM05D000089 ORTHO05D000104 8.6e-07 55.8 38 63.2
Hund07495 Selenicereus undatus HOM05D000089 ORTHO05D000104 8.6e-07 55.8 38 63.2
GSVIVG01012306001 Vitis vinifera HOM05D000089 ORTHO05D000104 8.6e-07 55.8 40 70.0
Cfa010825 Carpinus fangiana HOM05D000089 ORTHO05D000104 1.1e-06 55.5 40 70.0
Haze_03151 Corylus avellana HOM05D000089 ORTHO05D000104 1.1e-06 55.5 40 70.0
Potri.009G057800 Populus trichocarpa HOM05D000089 ORTHO05D000104 1.1e-06 55.5 37 67.6
Rhsim07G0058500 Rhododendron simsii HOM05D000089 ORTHO05D000104 1.1e-06 55.5 37 70.3
FvH4_7g01563 Fragaria vesca HOM05D000089 ORTHO05D000104 1.9e-06 54.7 34 70.6
Manes.07G009050 Manihot esculenta HOM05D000089 ORTHO05D000104 1.9e-06 54.7 39 69.2
Manes.07G009916 Manihot esculenta HOM05D000089 ORTHO05D000104 1.9e-06 54.7 39 69.2
Manes.07G009932 Manihot esculenta HOM05D000089 ORTHO05D000104 1.9e-06 54.7 39 69.2
COL.COLO4_15216 Corchorus olitorius HOM05D000089 ORTHO05D000104 2.5e-06 54.3 39 61.5
Eucgr.G03345 Eucalyptus grandis HOM05D000089 ORTHO05D000104 2.5e-06 54.3 40 62.5
FvH4_7g01561 Fragaria vesca HOM05D000089 ORTHO05D000104 2.5e-06 54.3 40 62.5
GSVIVG01011313001 Vitis vinifera HOM05D000089 ORTHO05D000104 2.5e-06 54.3 40 67.5
CsaV3_6G039290 Cucumis sativus L. HOM05D000089 ORTHO05D000104 3.3e-06 53.9 39 66.7
Gorai.003G054800 Gossypium raimondii HOM05D000089 ORTHO05D000104 3.3e-06 53.9 38 65.8
MELO3C014584.2 Cucumis melo HOM05D000089 ORTHO05D000104 4.3e-06 53.5 39 64.1
Manes.10G138318 Manihot esculenta HOM05D000089 ORTHO05D000104 4.3e-06 53.5 31 74.2
Nn7g36284 Nelumbo nucifera HOM05D000089 ORTHO05D000104 4.3e-06 53.5 39 66.7
PGR031G0576 Punica granatum HOM05D000089 ORTHO05D000104 4.3e-06 53.5 40 62.5
ClCG02G023060 Citrullus lanatus HOM05D000089 ORTHO05D000104 5.6e-06 53.1 39 66.7
QL12p000622 Quercus lobata HOM05D000089 ORTHO05D000104 5.6e-06 53.1 40 67.5
Cpa.g.sc3006.1 Carica papaya HOM05D000089 ORTHO05D000104 7.3e-06 52.8 40 67.5
COL.COLO4_15217 Corchorus olitorius HOM05D000089 ORTHO05D000104 7.3e-06 52.8 38 60.5
Sed0016941 Sechium edule HOM05D000089 ORTHO05D000104 7.3e-06 52.8 39 64.1
Ciclev10031947m.g Citrus clementina HOM05D000089 ORTHO05D000104 9.5e-06 52.4 31 74.2
Cc01_g04760 Coffea canephora HOM05D000089 ORTHO05D000104 9.5e-06 52.4 39 64.1
Eucgr.G03342 Eucalyptus grandis HOM05D000089 ORTHO05D000104 9.5e-06 52.4 40 62.5
Eucgr.G03351 Eucalyptus grandis HOM05D000089 ORTHO05D000104 9.5e-06 52.4 40 62.5
Gohir.D03G052850 Gossypium hirsutum HOM05D000089 ORTHO05D000104 9.5e-06 52.4 38 65.8
MD07G1020400 Malus domestica HOM05D000089 ORTHO05D000104 9.5e-06 52.4 35 71.4
MD07G1021600 Malus domestica HOM05D000089 ORTHO05D000104 9.5e-06 52.4 31 74.2
Potri.009G057600 Populus trichocarpa HOM05D000089 ORTHO05D000104 9.5e-06 52.4 40 62.5


User provided reference genes

Program Settings