Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 3.5e-216 754.6 366 100.0
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 1.6e-192 676.0 366 87.4
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 1.0e-186 656.8 364 86.5
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.2e-184 649.8 366 84.7
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.7e-184 648.7 364 84.3
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 2.7e-184 648.7 362 86.2
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 8.0e-184 647.1 369 83.5
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 1.4e-183 646.4 362 85.4
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 8.8e-183 643.7 364 85.7
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.0e-182 642.5 362 84.5
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 4.4e-182 641.3 367 84.5
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 5.7e-182 641.0 368 84.2
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 9.8e-182 640.2 364 82.4
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.3e-181 639.8 364 83.8
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 2.2e-181 639.0 364 84.9
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 2.8e-181 638.6 389 78.9
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 2.8e-181 638.6 362 82.9
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 8.3e-181 637.1 366 83.6
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 8.3e-181 637.1 364 84.1
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 4.1e-180 634.8 364 84.3
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 9.1e-180 633.6 367 83.4
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.2e-179 633.3 365 82.5
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 1.7e-178 629.4 365 83.6
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 2.9e-178 628.6 364 82.1
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 6.5e-178 627.5 364 81.9
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 7.2e-177 624.0 365 80.5
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 9.4e-177 623.6 363 81.3
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 9.4e-177 623.6 362 82.6
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 1.2e-176 623.2 362 81.8
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 1.2e-176 623.2 365 81.9
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.7e-176 622.1 362 82.6
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 8.0e-176 620.5 364 82.1
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 8.0e-176 620.5 362 82.6
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 2.3e-175 619.0 362 80.9
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 2.3e-175 619.0 363 81.5
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 3.0e-175 618.6 361 82.0
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 6.8e-175 617.5 364 81.6
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.5e-174 616.3 364 80.2
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 2.6e-174 615.5 364 81.0
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.6e-174 615.5 364 79.9
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 2.6e-174 615.5 362 82.6
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.4e-174 615.1 365 80.3
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 3.4e-174 615.1 364 79.9
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 7.5e-174 614.0 361 80.6
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 1.3e-173 613.2 364 81.0
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.3e-173 613.2 362 80.1
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 1.7e-173 612.8 364 81.6
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 2.2e-173 612.5 361 81.4
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 4.9e-173 611.3 362 81.8
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 1.1e-172 610.1 362 81.5
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 1.1e-172 610.1 362 80.1
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.4e-172 609.8 362 82.3
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.4e-172 609.8 359 80.8
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.8e-172 609.4 357 82.9
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 5.4e-172 607.8 364 78.0
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 5.4e-172 607.8 364 80.5
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 7.0e-172 607.4 362 81.8
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-171 606.7 364 79.4
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.0e-171 605.9 364 79.7
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 3.5e-171 605.1 364 79.7
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 5.9e-171 604.4 363 79.3
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 5.9e-171 604.4 364 79.7
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.7e-170 602.8 367 76.3
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.3e-170 602.4 361 79.5
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.9e-170 602.1 365 77.8
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.8e-170 601.7 365 77.5
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.8e-170 601.7 365 77.5
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 3.8e-170 601.7 364 77.5
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 5.0e-170 601.3 418 73.2
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 1.5e-169 599.7 360 79.4
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 1.9e-169 599.4 362 79.3
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 1.9e-169 599.4 363 79.3
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.6e-168 596.3 364 78.0
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 2.1e-168 595.9 362 78.5
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 2.1e-168 595.9 360 78.9
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.8e-168 595.5 361 78.4
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 8.9e-167 590.5 394 72.6
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.5e-166 589.7 438 69.4
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 2.6e-166 589.0 363 78.2
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 3.4e-166 588.6 362 77.9
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 3.4e-166 588.6 362 76.5
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 1.7e-165 586.3 363 77.7
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 1.7e-165 586.3 363 77.7
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 3.7e-165 585.1 362 77.1
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 4.9e-165 584.7 362 77.9
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 8.3e-165 583.9 369 75.3
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 8.3e-165 583.9 368 76.9
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 2.4e-164 582.4 360 76.9
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.2e-163 580.1 363 77.1
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.2e-163 580.1 360 76.9
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 2.0e-163 579.3 362 75.4
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 4.6e-163 578.2 363 77.1
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 5.9e-163 577.8 360 76.7
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 6.6e-162 574.3 362 76.0
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 1.1e-161 573.5 454 62.8
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 3.3e-161 572.0 360 74.7
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-160 570.1 456 63.6
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.6e-158 562.4 334 80.2
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 6.4e-157 557.8 371 70.9
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 6.0e-155 551.2 361 72.0
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 7.8e-155 550.8 360 72.2
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 3.3e-153 545.4 356 73.0
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 5.6e-153 544.7 361 70.6
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 2.1e-152 542.7 361 71.2
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 2.1e-152 542.7 360 70.6
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.8e-151 539.7 360 71.1
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 8.9e-151 537.3 388 70.6
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 1.4e-148 530.0 363 67.8
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.3e-146 523.5 362 68.5
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 6.6e-146 521.2 359 67.4
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 3.1e-143 512.3 274 88.7
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 1.2e-142 510.4 359 65.7
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 2.7e-139 499.2 519 52.8
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 8.6e-138 494.2 364 63.2
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 1.0e-130 470.7 255 86.7
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 1.3e-130 470.3 271 81.9
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 1.1e-127 460.7 347 68.9
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.2e-123 447.2 385 56.1
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 9.9e-118 427.6 277 74.4
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 4.8e-112 408.7 349 59.3
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.9e-105 386.7 351 53.6
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.9e-100 370.2 302 59.9
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 3.6e-99 365.9 350 52.3
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 8.2e-88 328.2 203 77.3
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 5.0e-85 318.9 227 67.0
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 2.1e-83 313.5 271 59.4
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 6.3e-80 302.0 180 80.0
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 2.4e-79 300.1 164 86.0
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 6.5e-77 292.0 161 83.9
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 9.4e-76 288.1 176 75.6
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 9.4e-68 261.5 186 67.2
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 6.8e-66 255.4 355 42.8
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 2.1e-59 233.8 178 62.4
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 9.2e-55 218.4 112 91.1
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 2.9e-48 196.8 169 60.9
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 5.0e-45 186.0 106 79.2
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 9.8e-41 171.8 107 79.4
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 1.7e-37 161.0 90 85.6
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 8.1e-27 125.6 91 65.9
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 1.8e-26 124.4 177 42.9
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.5e-20 104.0 232 31.0
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 2.5e-20 104.0 112 53.6
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 1.2e-19 101.7 77 62.3
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 2.1e-19 100.9 62 72.6
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 2.4e-18 97.4 55 78.2
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 3.8e-16 90.1 70 65.7
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 7.1e-15 85.9 83 54.2
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 4.6e-14 83.2 47 76.6
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 1.2e-06 58.5 61 45.9
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 2.1e-06 57.8 43 58.1
Oeu000043.1 Olea europaea HOM05D000206 ORTHO05D000232 6.0e-06 56.2 139 27.3


User provided reference genes

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