Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 1.4e-254 882.5 461 100.0
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 2.2e-191 672.5 474 75.3
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 5.1e-188 661.4 465 74.8
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 9.7e-187 657.1 476 73.1
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 1.1e-185 653.7 472 72.5
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 5.9e-184 647.9 506 70.4
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 7.7e-184 647.5 468 72.6
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 7.7e-184 647.5 468 72.6
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 8.5e-183 644.0 464 74.4
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 4.2e-182 641.7 465 73.1
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 3.3e-179 632.1 457 74.4
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 4.4e-179 631.7 456 71.5
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 7.5e-179 630.9 491 69.7
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 3.7e-178 628.6 460 72.2
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 8.2e-178 627.5 470 73.0
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 1.1e-177 627.1 469 72.7
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 1.4e-177 626.7 502 68.3
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 1.8e-177 626.3 470 71.5
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 1.8e-177 626.3 459 72.3
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 7.0e-177 624.4 470 71.7
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 9.1e-177 624.0 501 68.5
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 2.0e-176 622.9 489 67.9
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 2.0e-176 622.9 459 71.7
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 7.7e-176 620.9 460 70.0
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 1.7e-175 619.8 467 70.7
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 2.2e-175 619.4 457 69.6
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 2.9e-175 619.0 472 70.8
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 3.2e-174 615.5 459 70.4
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 4.2e-174 615.1 459 70.4
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 4.2e-174 615.1 452 71.9
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 5.5e-174 614.8 488 68.4
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.1e-173 612.8 459 70.2
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 2.7e-173 612.5 467 70.4
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 3.6e-173 612.1 470 70.4
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 1.4e-172 610.1 467 69.2
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 4.0e-172 608.6 458 70.5
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 1.2e-171 607.1 464 69.2
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.0e-171 606.3 459 69.3
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 2.0e-171 606.3 458 69.7
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 4.4e-171 605.1 454 69.6
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 6.3e-170 601.3 465 67.5
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 1.8e-169 599.7 468 68.6
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 5.4e-169 598.2 455 69.5
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 2.0e-168 596.3 466 68.2
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 7.7e-168 594.3 473 66.0
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 5.0e-167 591.7 467 65.5
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 1.1e-166 590.5 466 67.4
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 5.5e-166 588.2 464 68.1
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 1.2e-165 587.0 458 68.1
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 3.6e-165 585.5 464 65.3
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 4.7e-165 585.1 488 65.6
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 1.0e-164 583.9 455 65.9
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 2.3e-164 582.8 455 65.9
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 5.2e-164 581.6 459 67.8
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 6.8e-164 581.3 437 71.6
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 8.8e-164 580.9 467 64.9
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 1.5e-163 580.1 466 67.8
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 2.0e-163 579.7 464 64.9
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 3.4e-163 578.9 453 65.3
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 3.4e-163 578.9 455 65.7
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 4.4e-163 578.6 469 67.0
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 7.5e-163 577.8 463 65.2
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 1.3e-162 577.0 464 64.2
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 2.8e-162 575.9 463 65.2
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 4.9e-162 575.1 465 66.0
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 8.3e-162 574.3 456 67.8
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 1.8e-161 573.2 460 65.7
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 3.1e-161 572.4 468 63.2
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 4.1e-161 572.0 459 65.8
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 7.7e-160 567.8 464 66.6
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 3.8e-159 565.5 426 70.7
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 5.0e-159 565.1 468 65.0
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 1.5e-158 563.5 457 66.5
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 3.3e-158 562.4 479 62.6
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 6.8e-156 554.7 460 65.2
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 6.4e-154 548.1 459 64.1
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 1.8e-153 546.6 464 64.2
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 2.0e-152 543.1 481 62.0
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 6.6e-151 538.1 424 67.0
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 3.3e-150 535.8 407 68.8
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 2.1e-149 533.1 470 62.6
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 4.7e-149 531.9 457 60.8
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.3e-148 529.6 427 67.0
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 8.9e-148 527.7 469 62.5
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 2.4e-145 519.6 478 59.4
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 6.6e-143 511.5 473 60.7
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 3.3e-142 509.2 373 71.3
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 4.1e-137 492.3 487 55.6
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 4.6e-136 488.8 389 67.4
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 6.2e-133 478.4 322 78.0
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 1.8e-132 476.9 332 75.0
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 3.4e-131 472.6 467 55.0
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 1.3e-130 470.7 467 55.2
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 6.4e-130 468.4 360 68.1
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 2.3e-127 459.9 331 74.3
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 8.6e-127 458.0 459 55.6
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 1.9e-126 456.8 462 54.1
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 4.6e-120 435.6 478 49.8
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 2.6e-115 419.9 515 49.7
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 9.6e-110 401.4 350 62.3
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 5.3e-108 395.6 323 65.6
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 4.5e-107 392.5 332 61.4
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 7.6e-99 365.2 364 54.1
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.6e-96 357.5 350 55.4
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 7.4e-94 348.6 298 63.4
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 3.9e-87 326.2 267 67.0
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 1.2e-83 314.7 481 39.1
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 4.5e-83 312.8 220 74.5
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 2.9e-74 283.5 415 41.9
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 1.1e-68 265.0 388 44.1
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 1.1e-57 228.4 488 34.0
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 2.9e-50 203.8 484 34.1
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.5e-49 201.4 156 70.5
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 2.6e-46 190.7 193 57.5
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 7.8e-35 152.5 373 36.5
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 4.7e-32 143.3 128 64.8
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 1.3e-26 125.2 405 25.9
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 2.5e-25 120.9 84 71.4
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 7.3e-25 119.4 498 23.5
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 1.6e-24 118.2 138 52.9
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 3.1e-23 114.0 81 71.6
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 1.2e-22 112.1 81 71.6
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 1.2e-22 112.1 82 73.2
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-21 108.6 438 25.3
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 4.7e-16 90.1 100 50.0
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 9.9e-14 82.4 97 48.5
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 3.3e-09 67.4 70 51.4
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 8.1e-08 62.8 70 48.6


User provided reference genes

Program Settings