Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031787001 Vitis vinifera HOM05D006858 ORTHO05D008767 1.6e-248 863.2 450 100.0
Manes.17G093600 Manihot esculenta HOM05D006858 ORTHO05D008767 9.2e-58 229.6 135 77.8
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 1.6e-57 228.8 135 79.3
Atru.chr5.2775 Acer truncatum HOM05D006858 ORTHO05D008767 1.0e-56 226.1 135 79.3
QL11p037400 Quercus lobata HOM05D006858 ORTHO05D008767 1.3e-56 225.7 135 78.5
CSS0006454 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 5.1e-56 223.8 135 79.3
CSS0049463 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 5.1e-56 223.8 135 79.3
Rhsim05G0081400 Rhododendron simsii HOM05D006858 ORTHO05D008767 4.3e-55 220.7 135 77.0
vmacro13394 Vaccinium macrocarpon HOM05D006858 ORTHO05D008767 5.6e-55 220.3 135 77.0
Gohir.D02G212500 Gossypium hirsutum HOM05D006858 ORTHO05D008767 1.6e-54 218.8 135 76.3
Prupe.7G039700 Prunus persica HOM05D006858 ORTHO05D008767 2.8e-54 218.0 134 75.4
Cfa005452 Carpinus fangiana HOM05D006858 ORTHO05D008767 4.7e-54 217.2 135 76.3
Gorai.005G240500 Gossypium raimondii HOM05D006858 ORTHO05D008767 4.7e-54 217.2 134 76.1
Duzib132G0284 Durio zibethinus HOM05D006858 ORTHO05D008767 1.1e-53 216.1 135 74.1
Gohir.A03G191600 Gossypium hirsutum HOM05D006858 ORTHO05D008767 1.8e-53 215.3 135 74.8
MD10G1090200 Malus domestica HOM05D006858 ORTHO05D008767 1.8e-53 215.3 135 72.6
TAR628G1172 Trochodendron aralioides HOM05D006858 ORTHO05D008767 1.8e-53 215.3 135 75.6
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 2.4e-53 214.9 135 75.6
Thecc.02G097300 Theobroma cacao HOM05D006858 ORTHO05D008767 3.1e-53 214.5 135 73.3
CANSAT25G3187 Cannabis sativa HOM05D006858 ORTHO05D008767 9.0e-53 213.0 135 74.1
PGR142G0738 Punica granatum HOM05D006858 ORTHO05D008767 1.2e-52 212.6 135 71.9
Ciclev10028118m.g Citrus clementina HOM05D006858 ORTHO05D008767 3.4e-52 211.1 135 72.6
Potri.009G105600 Populus trichocarpa HOM05D006858 ORTHO05D008767 1.7e-51 208.8 135 71.1
THA.LOC104804370 Tarenaya hassleriana HOM05D006858 ORTHO05D008767 1.7e-51 208.8 135 71.1
arahy.Tifrunner.gnm1.ann1.U9N0YZ Arachis hypogaea HOM05D006858 ORTHO05D008767 2.2e-51 208.4 135 71.9
Dinv23584 Davidia involucrata HOM05D006858 ORTHO05D008767 2.2e-51 208.4 135 77.0
TWI31G0517 Tripterygium wilfordii HOM05D006858 ORTHO05D008767 3.8e-51 207.6 135 71.1
Eucgr.I01171 Eucalyptus grandis HOM05D006858 ORTHO05D008767 8.4e-51 206.5 135 69.6
C04p46110 Brassica napus HOM05D006858 ORTHO05D008767 1.4e-50 205.7 135 70.4
BolC4t26195H Brassica oleracea HOM05D006858 ORTHO05D008767 1.4e-50 205.7 135 70.4
Sabra09G0080800 Salix brachista HOM05D006858 ORTHO05D008767 1.9e-50 205.3 135 69.6
RcHm_v2.0_Chr6g0258901 Rosa chinensis HOM05D006858 ORTHO05D008767 2.4e-50 204.9 135 71.1
Sp7g02300 Schrenkiella parvula HOM05D006858 ORTHO05D008767 3.2e-50 204.5 135 70.4
AUR62016628 Chenopodium quinoa HOM05D006858 ORTHO05D008767 7.1e-50 203.4 134 70.9
arahy.Tifrunner.gnm1.ann1.3PJ361 Arachis hypogaea HOM05D006858 ORTHO05D008767 1.2e-49 202.6 135 70.4
Thhalv10027654m.g Eutrema salsugineum HOM05D006858 ORTHO05D008767 2.1e-49 201.8 135 71.1
Phvul.003G012700 Phaseolus vulgaris HOM05D006858 ORTHO05D008767 3.5e-49 201.1 135 67.4
BcaB06g27362 Brassica carinata HOM05D006858 ORTHO05D008767 4.6e-49 200.7 136 69.9
FAN27G2753 Fragaria x ananassa HOM05D006858 ORTHO05D008767 4.6e-49 200.7 135 68.9
Sc08g0000040 Simmondsia chinensis HOM05D006858 ORTHO05D008767 4.6e-49 200.7 135 68.1
Glyma.20G010100 Glycine max HOM05D006858 ORTHO05D008767 7.8e-49 199.9 135 68.1
FvH4_2g06720 Fragaria vesca HOM05D006858 ORTHO05D008767 1.0e-48 199.5 135 68.9
FAN24G1409 Fragaria x ananassa HOM05D006858 ORTHO05D008767 1.0e-48 199.5 135 68.9
Aqoxy6G01416 Aquilegia oxysepala HOM05D006858 ORTHO05D008767 1.3e-48 199.1 135 68.9
AUR62011433 Chenopodium quinoa HOM05D006858 ORTHO05D008767 1.3e-48 199.1 135 68.1
Aa31LG9G16400 Aethionema arabicum HOM05D006858 ORTHO05D008767 2.3e-48 198.4 135 67.4
Lalb_Chr10g0095481 Lupinus albus HOM05D006858 ORTHO05D008767 2.3e-48 198.4 135 68.9
FAN15G2218 Fragaria x ananassa HOM05D006858 ORTHO05D008767 3.0e-48 198.0 135 68.1
FAN20G2333 Fragaria x ananassa HOM05D006858 ORTHO05D008767 3.0e-48 198.0 135 68.1
EL10Ac9g21827 Beta vulgaris HOM05D006858 ORTHO05D008767 8.7e-48 196.4 135 68.9
AT5G39710 Arabidopsis thaliana HOM05D006858 ORTHO05D008767 1.1e-47 196.1 135 68.9
VMungo1215G0504 Vigna mungo HOM05D006858 ORTHO05D008767 1.5e-47 195.7 135 65.2
ClCG02G005770 Citrullus lanatus HOM05D006858 ORTHO05D008767 1.9e-47 195.3 135 65.9
ECA234G1772 Erigeron canadensis HOM05D006858 ORTHO05D008767 1.9e-47 195.3 135 65.9
Ah.01g020130 Amaranthus hybridus HOM05D006858 ORTHO05D008767 5.6e-47 193.7 135 64.4
Nn4g22909 Nelumbo nucifera HOM05D006858 ORTHO05D008767 7.3e-47 193.4 140 65.0
DCAR_022059 Daucus carota HOM05D006858 ORTHO05D008767 1.3e-46 192.6 135 64.4
Medtr1g033960 Medicago truncatula HOM05D006858 ORTHO05D008767 1.3e-46 192.6 135 68.1
MSTRG.27720 Avicennia marina HOM05D006858 ORTHO05D008767 1.6e-46 192.2 135 63.0
HanXRQChr10g0303231 Helianthus annuus HOM05D006858 ORTHO05D008767 1.6e-46 192.2 135 65.2
Psat6g096520 Pisum sativum HOM05D006858 ORTHO05D008767 2.1e-46 191.8 135 68.1
Sed0026070 Sechium edule HOM05D006858 ORTHO05D008767 3.6e-46 191.0 136 64.7
Lj2g0007949 Lotus japonicus HOM05D006858 ORTHO05D008767 4.8e-46 190.7 135 67.4
Lsat_1_v5_gn_5_113361 Lactuca sativa HOM05D006858 ORTHO05D008767 1.1e-45 189.5 135 65.2
Ca_12460_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 2.4e-45 188.3 135 67.4
Ca_29767_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 2.4e-45 188.3 135 67.4
SHI05381 Sapria himalayana HOM05D006858 ORTHO05D008767 4.0e-45 187.6 135 62.2
Migut.N01200 Erythranthe guttata HOM05D006858 ORTHO05D008767 9.0e-45 186.4 135 60.7
A04p12420 Brassica napus HOM05D006858 ORTHO05D008767 1.2e-44 186.0 135 65.2
BraA04t16905Z Brassica rapa HOM05D006858 ORTHO05D008767 1.2e-44 186.0 135 65.2
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 2.6e-44 184.9 134 62.7
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 2.6e-44 184.9 134 61.9
Nitab4.5_0004334g0100 Nicotiana tabacum HOM05D006858 ORTHO05D008767 4.5e-44 184.1 135 61.5
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 7.6e-44 183.3 135 61.5
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 9.9e-44 183.0 134 61.9
Sopen01g050630 Solanum pennellii HOM05D006858 ORTHO05D008767 9.9e-44 183.0 134 60.4
PGSC0003DMG401025809 Solanum tuberosum HOM05D006858 ORTHO05D008767 9.9e-44 183.0 134 60.4
TPR.G11140 Trifolium pratense HOM05D006858 ORTHO05D008767 4.9e-43 180.6 135 65.2
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 1.9e-42 178.7 135 60.0
Oeu013687.1 Olea europaea HOM05D006858 ORTHO05D008767 1.5e-39 169.1 119 62.2
Lj9A359T74 Lonicera japonica HOM05D006858 ORTHO05D008767 3.7e-38 164.5 135 60.7
SGA_v2.0_scaffold13G06572 Striga asiatica HOM05D006858 ORTHO05D008767 3.7e-38 164.5 135 55.6
Prupe.8G118500 Prunus persica HOM05D006858 ORTHO05D008767 4.8e-38 164.1 106 72.6
RcHm_v2.0_Chr7g0233241 Rosa chinensis HOM05D006858 ORTHO05D008767 1.4e-37 162.5 135 62.2
Os06g0152500 Oryza sativa ssp. japonica HOM05D006858 ORTHO05D008767 2.0e-36 158.7 133 53.4
COL.COLO4_32688 Corchorus olitorius HOM05D006858 ORTHO05D008767 1.3e-35 156.0 135 57.0
PGSC0003DMG402025785 Solanum tuberosum HOM05D006858 ORTHO05D008767 3.8e-35 154.5 134 52.2
Carub.0007s3617 Capsella rubella HOM05D006858 ORTHO05D008767 1.6e-33 149.1 90 75.6
TAR633G1647 Trochodendron aralioides HOM05D006858 ORTHO05D008767 1.6e-33 149.1 135 57.0
Zm00001eb376700 Zea mays HOM05D006858 ORTHO05D008767 6.0e-33 147.1 133 50.4
Actinidia17852 Actinidia chinensis HOM05D006858 ORTHO05D008767 1.0e-32 146.4 121 60.3
CDE09G0572 Ceratophyllum demersum HOM05D006858 ORTHO05D008767 3.1e-29 134.8 132 48.5
Cpa.g.sc62.38 Carica papaya HOM05D006858 ORTHO05D008767 5.7e-23 114.0 123 49.6
ATR0043G025 Amborella trichopoda HOM05D006858 ORTHO05D008767 6.9e-21 107.1 83 61.4
TPR.G40260 Trifolium pratense HOM05D006858 ORTHO05D008767 5.1e-16 90.9 120 43.3
Zm00001eb348200 Zea mays HOM05D006858 ORTHO05D008767 2.0e-15 89.0 133 36.8
AL7G50600 Arabidopsis lyrata HOM05D006858 ORTHO05D008767 2.8e-14 85.1 48 79.2
ATR1120G070 Amborella trichopoda HOM05D006858 ORTHO05D008767 2.4e-13 82.0 53 71.7
HPP92_006001 Vanilla planifolia HOM05D006858 ORTHO05D008767 9.1e-13 80.1 68 52.9
PSO210G3738 Papaver somniferum HOM05D010315 ORTHO05D011376 6.1e-09 67.4 79 41.8
PSO210G7725 Papaver somniferum HOM05D010315 ORTHO05D011376 6.7e-08 63.9 79 39.2
CSS0037385 Camellia sinensis var. sinensis HOM05D008810 ORTHO05D010971 3.3e-07 61.6 129 27.9
Lj4g0013989 Lotus japonicus HOM05D000001 ORTHO05D000003 7.4e-07 60.5 126 32.5
CARHR262550 Cardamine hirsuta HOM05D006858 ORTHO05D008767 9.7e-07 60.1 30 90.0
Lsat_1_v5_gn_5_97301 Lactuca sativa HOM05D000001 ORTHO05D009097 1.3e-06 59.7 120 27.5
arahy.Tifrunner.gnm1.ann1.B0BY4Q Arachis hypogaea HOM05D000891 ORTHO05D000761 1.7e-06 59.3 75 30.7
arahy.Tifrunner.gnm1.ann1.LDS0KH Arachis hypogaea HOM05D000891 ORTHO05D000761 1.7e-06 59.3 75 30.7
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 2.2e-06 58.9 103 33.0
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 2.8e-06 58.5 120 33.3
Nn1g08193 Nelumbo nucifera HOM05D008810 ORTHO05D010971 2.8e-06 58.5 106 29.2
ATR0594G023 Amborella trichopoda HOM05D006858 ORTHO05D026559 4.8e-06 57.8 87 31.0
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 4.8e-06 57.8 116 35.3
Lalb_Chr14g0373751 Lupinus albus HOM05D000891 ORTHO05D000761 4.8e-06 57.8 88 27.3
ATR0594G223 Amborella trichopoda HOM05D006858 ORTHO05D026559 6.3e-06 57.4 84 32.1
MSTRG.4712 Avicennia marina HOM05D000891 ORTHO05D000761 6.3e-06 57.4 86 29.1
BcaB02g07294 Brassica carinata HOM05D000891 ORTHO05D000761 6.3e-06 57.4 89 29.2
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 8.2e-06 57.0 67 40.3
Carub.0007s3622 Capsella rubella HOM05D006858 ORTHO05D008767 8.2e-06 57.0 42 59.5
Haze_25752 Corylus avellana HOM05D006999 ORTHO05D008936 8.2e-06 57.0 94 28.7


User provided reference genes

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