Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 3855.1 1931 100.0
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2488.8 2015 65.2
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2480.3 2032 63.9
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2476.8 2014 64.9
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2444.8 2034 62.8
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2413.6 2029 62.5
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 2374.4 1993 62.3
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2322.0 2001 61.0
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2308.5 1999 60.5
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 2307.7 2020 61.0
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 2293.8 1987 61.2
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 2279.2 1999 59.8
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2270.0 1995 59.1
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2269.6 1998 59.6
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 2269.2 2032 60.2
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 2263.4 1995 60.0
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2257.3 1999 59.9
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 2253.0 2000 59.7
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2248.4 1990 60.2
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2246.1 1975 60.2
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2239.2 2012 60.1
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2223.0 2019 59.5
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 2221.8 2002 58.2
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 2199.9 2023 58.2
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2199.5 1976 58.5
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2196.4 1998 58.0
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2180.6 2017 57.2
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 2175.6 2032 57.6
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2166.0 2010 58.8
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2162.1 2000 57.1
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2132.5 2001 56.3
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 2104.7 2044 56.2
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 2083.5 1994 55.9
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 2082.0 1994 55.8
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2068.5 2013 56.3
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 2010.7 1996 54.0
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1996.9 2003 54.2
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1990.7 2004 53.9
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1979.9 2004 53.7
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1942.9 1985 53.2
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1940.6 2003 52.6
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1934.5 2004 52.8
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1933.7 2008 53.2
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1933.3 1932 55.9
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1926.0 1994 52.9
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1918.3 2005 52.3
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1906.7 1994 52.6
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1903.3 2034 52.3
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1902.5 1985 52.8
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1900.9 1983 52.4
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1894.4 2001 52.6
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1893.6 1999 52.1
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1891.3 2002 51.6
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1887.8 2009 52.5
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1885.5 2067 51.5
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1884.4 2020 51.7
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1881.7 2010 52.8
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1866.7 1960 52.4
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1865.1 2006 51.4
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1858.2 1983 51.5
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1855.5 2004 50.9
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1823.1 1945 52.4
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1820.8 1719 57.6
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1809.3 1924 51.5
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1790.0 1911 51.8
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1788.1 1721 56.8
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1786.9 1946 51.4
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1775.4 1948 51.1
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1774.2 1949 50.9
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1772.3 1955 51.4
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1762.7 1946 50.4
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1762.7 1961 50.8
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1762.7 1921 50.4
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1746.9 1948 50.3
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1732.2 2012 48.6
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1730.7 1959 50.2
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1729.9 1956 50.2
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1728.4 1956 50.2
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1728.0 2031 47.6
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1727.6 1956 50.2
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1726.8 1953 50.3
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1713.4 1932 49.6
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1709.9 1920 50.6
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1706.8 1951 49.7
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1703.3 2124 46.3
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1692.9 2002 48.9
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1684.5 1967 49.3
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1657.1 2010 47.2
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1586.2 1455 58.3
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1573.5 1455 58.0
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1523.5 1780 47.5
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1442.9 1987 43.8
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1424.1 2076 42.4
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1372.8 1737 45.1
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1319.7 1162 59.3
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1277.3 1660 45.6
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1231.5 2005 38.4
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 0.0e+00 1120.5 2112 36.1
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 5.0e-296 1022.3 1669 39.5
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 2.2e-283 980.3 1463 40.1
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 7.6e-252 875.5 2157 31.3
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 7.4e-223 779.2 1946 32.4
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 1.4e-218 765.0 681 60.2
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 1.3e-216 758.4 2105 30.2
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 4.5e-188 663.7 1184 36.7
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 2.9e-187 661.0 1713 30.9
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 7.5e-167 593.2 1844 27.1
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.2e-157 561.2 436 67.4
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.4e-151 541.2 1094 34.9
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.1e-141 509.6 398 63.8
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 5.2e-136 490.7 337 73.0
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 6.6e-131 473.8 435 57.7
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 7.3e-122 443.7 385 57.1
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 1.3e-121 443.0 269 82.5
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.5e-119 436.0 354 66.9
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 1.3e-105 389.8 269 71.0
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 1.0e-86 327.0 500 40.4
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 1.4e-83 316.6 198 77.8
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 9.7e-74 283.9 374 46.3
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 3.1e-72 278.9 251 61.8
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.2e-63 250.4 218 61.0
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 7.2e-61 241.1 179 63.7
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 2.2e-57 229.6 180 63.3
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 4.7e-44 185.3 314 39.5
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 1.3e-41 177.2 373 33.2
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 1.7e-33 150.2 175 53.7
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 3.7e-33 149.1 83 83.1
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-28 132.9 584 23.3
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 7.5e-26 124.8 220 35.0
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 7.5e-26 124.8 389 25.7
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 3.7e-25 122.5 67 85.1
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 1.1e-24 120.9 67 83.6
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 9.2e-24 117.9 276 30.1
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 2.3e-22 113.2 64 84.4
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 5.1e-22 112.1 68 77.9
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 1.4e-19 104.0 62 74.2
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 1.2e-18 100.9 102 53.9
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.5e-18 100.5 79 63.3
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-18 100.1 100 45.0
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 2.7e-15 89.7 56 76.8
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 8.7e-14 84.7 133 38.3
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 2.5e-13 83.2 57 80.7
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 8.1e-12 78.2 55 69.1
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 3.9e-06 59.3 46 56.5


User provided reference genes

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