Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 1.0e-119 433.3 210 100.0
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 1.3e-74 283.5 209 67.9
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 7.3e-73 277.7 213 69.0
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 4.7e-72 275.0 212 64.6
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 8.1e-72 274.2 213 69.0
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 5.2e-71 271.6 214 68.2
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 6.8e-71 271.2 203 70.0
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 8.9e-71 270.8 218 66.1
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 7.5e-70 267.7 215 66.0
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 2.9e-69 265.8 211 65.9
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 1.1e-68 263.8 212 64.6
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 7.8e-67 257.7 213 62.9
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 1.0e-66 257.3 201 65.2
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 3.0e-66 255.8 211 64.0
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 3.9e-66 255.4 243 57.2
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 2.5e-65 252.7 204 64.2
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 3.3e-65 252.3 220 62.3
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 4.3e-65 251.9 215 59.5
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 3.6e-64 248.8 215 60.5
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 4.7e-64 248.4 209 61.7
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 1.4e-63 246.9 222 60.4
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 1.4e-63 246.9 213 62.0
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 1.2e-62 243.8 212 60.8
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 5.8e-62 241.5 209 59.8
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 1.3e-61 240.4 208 61.5
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 2.2e-61 239.6 212 61.8
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 6.4e-61 238.0 210 60.0
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 6.4e-61 238.0 210 60.0
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 1.1e-60 237.3 210 60.0
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 7.1e-60 234.6 191 60.2
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 9.3e-60 234.2 212 57.5
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 1.3e-58 230.3 180 65.6
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 1.7e-58 229.9 214 60.3
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 2.3e-58 229.6 190 64.2
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 8.7e-58 227.6 209 57.9
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 1.5e-57 226.9 207 58.0
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.5e-57 226.9 216 56.5
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 1.9e-57 226.5 216 59.3
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 7.3e-57 224.6 216 56.0
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 7.3e-57 224.6 189 60.8
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 1.3e-56 223.8 206 59.7
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 1.3e-56 223.8 208 58.2
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 3.6e-56 222.2 203 61.6
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 6.9e-55 218.0 176 61.9
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 9.0e-55 217.6 208 56.2
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 2.6e-54 216.1 217 54.8
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 1.7e-53 213.4 201 55.7
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 3.8e-53 212.2 143 69.9
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 3.8e-53 212.2 143 69.9
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 4.9e-53 211.8 216 53.2
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 1.1e-52 210.7 198 57.6
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 1.4e-52 210.3 205 55.6
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 3.2e-52 209.1 198 57.1
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 7.1e-52 208.0 211 53.6
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 2.1e-51 206.5 208 55.3
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 2.1e-51 206.5 206 53.4
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 4.6e-51 205.3 198 56.1
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 6.0e-51 204.9 168 63.1
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 6.0e-51 204.9 174 61.5
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 7.8e-51 204.5 198 56.1
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 7.8e-51 204.5 207 54.6
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 1.3e-50 203.8 213 53.1
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 1.7e-50 203.4 208 54.8
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 2.3e-50 203.0 208 54.8
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 5.1e-50 201.8 186 58.1
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 2.5e-49 199.5 203 54.2
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 4.3e-49 198.7 94 92.6
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 4.3e-49 198.7 198 55.1
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 5.6e-49 198.4 197 53.8
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 2.8e-48 196.1 191 54.5
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 1.4e-47 193.7 137 68.6
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 1.8e-47 193.4 219 49.3
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 5.3e-47 191.8 204 52.9
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 6.9e-47 191.4 208 49.5
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.0e-46 189.9 184 54.3
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 3.4e-46 189.1 99 82.8
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 4.5e-46 188.7 183 54.6
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 4.5e-46 188.7 187 54.0
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 7.6e-46 188.0 185 53.0
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 9.9e-46 187.6 208 50.5
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 1.3e-45 187.2 117 69.2
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 1.7e-45 186.8 194 53.1
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 2.2e-45 186.4 120 72.5
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.9e-45 186.0 182 53.3
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 6.4e-45 184.9 202 52.0
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 8.4e-45 184.5 131 63.4
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 1.1e-44 184.1 185 54.6
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 3.5e-43 179.1 203 51.2
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 7.9e-43 177.9 204 50.5
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 1.3e-42 177.2 165 57.0
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 2.3e-42 176.4 181 53.0
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 6.7e-42 174.9 196 51.5
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 4.3e-41 172.2 212 44.3
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 7.6e-38 161.4 78 89.7
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 4.9e-37 158.7 213 48.4
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 7.1e-36 154.8 166 52.4
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 7.9e-35 151.4 106 65.1
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 7.9e-35 151.4 135 57.0
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 1.0e-34 151.0 194 43.8
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.3e-34 149.8 156 54.5
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 1.5e-33 147.1 123 57.7
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 3.7e-32 142.5 148 56.1
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 3.1e-31 139.4 121 47.9
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.4e-28 130.6 112 57.1
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 2.1e-27 126.7 89 61.8
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 7.9e-27 124.8 114 53.5
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 1.8e-26 123.6 170 47.1
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 1.1e-25 120.9 68 76.5
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 9.7e-25 117.9 144 50.7
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.8e-23 113.6 146 48.6
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 3.6e-19 99.4 70 61.4
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 3.0e-18 96.3 72 65.3
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 3.7e-16 89.4 144 41.7
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 4.5e-14 82.4 69 56.5
Cre07.g339200 Chlamydomonas reinhardtii HOM05D007022 ORTHO05D008868 9.7e-09 64.7 96 34.4


User provided reference genes

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