Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 4.9e-196 687.6 340 100.0
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 1.8e-158 562.8 341 81.5
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 4.1e-158 561.6 336 81.8
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 5.9e-157 557.8 336 81.2
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 1.3e-156 556.6 336 81.5
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 1.3e-156 556.6 336 81.5
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 1.5e-155 553.1 342 81.3
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 2.5e-155 552.4 336 81.8
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 6.1e-154 547.7 341 78.6
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 1.8e-153 546.2 341 78.3
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 1.8e-153 546.2 341 78.9
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 5.2e-153 544.7 345 78.3
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.4e-150 536.6 339 79.4
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 2.3e-148 529.3 307 82.7
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 2.3e-148 529.3 346 76.6
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 3.3e-147 525.4 344 75.9
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.6e-146 523.1 345 74.8
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 3.6e-146 521.9 345 75.4
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 6.8e-145 517.7 375 70.4
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 1.2e-144 516.9 344 73.8
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 3.4e-144 515.4 345 73.9
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 5.7e-144 514.6 354 72.9
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 7.5e-144 514.2 345 73.9
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 1.3e-143 513.5 329 77.5
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 1.1e-142 510.4 349 73.9
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.4e-142 510.0 341 74.8
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 1.4e-142 510.0 354 72.3
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.4e-142 509.2 339 76.1
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 4.1e-142 508.4 329 76.3
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 5.4e-142 508.1 345 73.6
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 1.2e-141 506.9 306 78.4
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 2.7e-141 505.8 332 75.3
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 3.5e-141 505.4 345 73.6
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 4.5e-141 505.0 349 71.9
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 4.5e-141 505.0 349 72.5
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 4.5e-141 505.0 333 75.1
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 5.9e-141 504.6 345 73.6
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 5.9e-141 504.6 313 77.6
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 5.0e-140 501.5 316 76.6
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 6.6e-140 501.1 347 72.9
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.1e-139 500.4 345 71.9
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 5.6e-139 498.0 345 71.3
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 5.6e-139 498.0 316 73.7
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 7.3e-139 497.7 345 71.3
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 9.5e-139 497.3 335 74.3
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 1.2e-138 496.9 373 67.8
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 1.6e-138 496.5 345 72.8
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 4.7e-138 495.0 334 73.4
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 6.1e-138 494.6 330 72.7
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 6.1e-138 494.6 304 77.6
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 1.0e-137 493.8 327 74.6
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 4.0e-137 491.9 336 72.9
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 5.2e-137 491.5 343 71.1
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 5.2e-137 491.5 321 73.8
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 6.8e-137 491.1 330 74.8
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 8.9e-137 490.7 329 73.6
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 2.0e-136 489.6 325 74.8
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 2.6e-136 489.2 349 71.6
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 2.6e-136 489.2 324 74.7
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 2.6e-136 489.2 346 71.4
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 3.4e-136 488.8 342 70.8
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 4.4e-136 488.4 327 73.7
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 7.5e-136 487.6 349 70.2
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 7.5e-136 487.6 344 71.5
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 1.3e-135 486.9 326 73.6
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 1.3e-135 486.9 345 71.3
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.2e-135 486.1 305 77.4
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 3.7e-135 485.3 344 71.5
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 4.9e-135 485.0 341 70.4
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 6.4e-135 484.6 344 71.2
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 1.4e-134 483.4 312 74.4
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 4.1e-134 481.9 348 71.0
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 4.1e-134 481.9 344 70.3
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 5.4e-134 481.5 325 73.2
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 1.6e-133 479.9 352 68.2
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 2.7e-133 479.2 316 73.7
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 2.7e-133 479.2 345 68.7
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 1.7e-132 476.5 349 69.9
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 2.3e-132 476.1 353 68.8
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 5.0e-132 474.9 350 68.3
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 6.6e-132 474.6 343 69.4
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 6.2e-130 468.0 347 67.7
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 1.4e-129 466.8 338 68.6
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 4.0e-129 465.3 338 68.6
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 3.4e-128 462.2 317 72.2
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.4e-126 456.8 286 76.2
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 9.2e-126 454.1 284 78.5
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 7.8e-125 451.1 285 76.8
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 1.0e-124 450.7 345 64.9
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 3.9e-124 448.7 377 61.3
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 8.6e-124 447.6 345 65.8
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 1.1e-121 440.7 297 73.4
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 2.3e-121 439.5 346 64.2
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 3.1e-121 439.1 351 64.1
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 4.0e-121 438.7 316 67.1
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 4.0e-121 438.7 279 73.8
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 5.2e-121 438.3 345 68.4
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 2.0e-120 436.4 346 63.6
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 4.4e-120 435.3 310 66.5
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 2.4e-118 429.5 309 70.2
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 5.4e-118 428.3 341 62.2
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 5.4e-118 428.3 342 63.5
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 9.2e-118 427.6 328 67.7
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 1.6e-117 426.8 280 73.6
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 3.0e-116 422.5 336 66.7
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 6.6e-116 421.4 306 66.3
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 8.6e-116 421.0 342 61.1
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 1.1e-115 420.6 327 64.8
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 2.1e-114 416.4 357 61.9
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 2.1e-114 416.4 292 72.3
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 2.8e-114 416.0 355 62.5
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 2.8e-114 416.0 327 62.7
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 3.6e-114 415.6 355 62.8
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 6.2e-114 414.8 312 63.8
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 6.2e-114 414.8 341 60.7
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 4.0e-113 412.1 323 62.8
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 5.2e-113 411.8 310 67.7
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 5.2e-113 411.8 309 65.4
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 1.2e-112 410.6 312 63.5
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 1.2e-112 410.6 312 63.5
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 1.5e-112 410.2 312 63.1
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 1.3e-111 407.1 312 62.5
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 1.1e-105 387.5 354 57.1
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.1e-102 377.5 252 73.0
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 3.5e-101 372.5 281 64.1
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 6.0e-101 371.7 303 58.4
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 5.1e-100 368.6 224 80.4
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 8.7e-100 367.9 309 62.1
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 1.9e-99 366.7 261 70.9
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 1.1e-97 360.9 309 56.6
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 9.0e-97 357.8 301 57.8
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 6.4e-95 351.7 225 76.4
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 7.1e-94 348.2 341 53.7
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 3.3e-91 339.3 306 52.9
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 4.0e-89 332.4 309 53.7
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 8.7e-84 314.7 234 65.4
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 7.4e-83 311.6 342 48.5
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.8e-82 309.7 203 76.4
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 8.2e-82 308.1 282 56.7
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 4.2e-78 295.8 318 54.1
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.4e-70 270.8 164 79.9
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.0e-59 233.8 162 67.9
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.0e-59 233.8 162 67.9
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.5e-56 224.2 140 78.6
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.4e-49 200.3 112 85.7
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 7.5e-43 178.7 324 32.7
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 7.0e-41 172.2 247 42.1
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 7.7e-40 168.7 112 75.0
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.2e-39 167.2 129 64.3
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 1.6e-37 161.0 312 35.3
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 9.8e-35 151.8 310 31.3
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 9.8e-35 151.8 164 51.8
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 1.3e-26 124.8 359 31.8
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 1.1e-25 121.7 166 43.4
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 1.0e-23 115.2 87 67.8
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 9.8e-19 98.6 286 28.3
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 6.0e-16 89.4 105 46.7
AUR62010421 Chenopodium quinoa HOM05D000030 ORTHO05D000031 3.3e-06 57.0 55 54.5


User provided reference genes

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