Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 9.7e-118 426.8 210 100.0
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 6.8e-95 350.9 206 85.0
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.8e-93 345.5 198 84.8
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 2.8e-93 345.5 206 81.6
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 1.4e-92 343.2 201 80.1
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 1.6e-91 339.7 205 79.5
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 1.0e-90 337.0 211 80.1
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 1.7e-90 336.3 201 80.6
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 1.1e-89 333.6 201 78.6
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 4.3e-89 331.6 206 80.1
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 5.2e-87 324.7 200 79.5
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 1.2e-86 323.6 196 80.6
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 2.0e-86 322.8 205 76.6
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.6e-86 322.4 204 76.0
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 5.8e-86 321.2 191 80.1
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 5.8e-86 321.2 194 79.4
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 9.8e-86 320.5 198 77.3
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 9.8e-86 320.5 209 76.6
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 1.3e-85 320.1 205 76.6
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 1.7e-85 319.7 193 77.2
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 1.7e-85 319.7 193 79.3
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 1.7e-85 319.7 200 77.0
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 2.9e-85 318.9 194 78.4
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 6.4e-85 317.8 192 77.6
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 6.4e-85 317.8 192 77.6
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.1e-84 317.0 204 75.5
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.1e-84 317.0 204 75.5
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 2.4e-84 315.8 198 77.3
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 9.2e-84 313.9 210 75.2
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 1.2e-83 313.5 205 73.2
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 1.2e-83 313.5 193 78.2
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 1.6e-83 313.2 202 75.2
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.6e-83 313.2 202 75.2
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 3.5e-83 312.0 201 74.1
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 3.5e-83 312.0 233 70.0
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 6.0e-83 311.2 198 76.3
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 1.0e-82 310.5 195 76.4
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.0e-82 310.5 203 73.9
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 1.0e-82 310.5 208 75.0
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 1.7e-82 309.7 208 74.5
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 3.0e-82 308.9 205 73.7
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 5.0e-82 308.1 193 76.7
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 6.6e-82 307.8 208 70.2
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 1.5e-81 306.6 208 69.7
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 1.9e-81 306.2 194 75.8
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 1.9e-81 306.2 207 72.0
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 2.5e-81 305.8 210 73.8
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 5.6e-81 304.7 208 73.1
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 9.5e-81 303.9 207 72.9
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 6.2e-80 301.2 207 71.0
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 8.0e-80 300.8 198 74.2
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 1.1e-79 300.4 208 68.8
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 1.1e-79 300.4 208 70.2
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 2.3e-79 299.3 208 71.2
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 2.3e-79 299.3 198 72.2
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 4.0e-79 298.5 203 71.9
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 5.2e-79 298.1 201 73.6
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 1.2e-78 297.0 201 72.1
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 6.4e-77 291.2 193 74.6
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 3.2e-76 288.9 193 71.0
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 9.2e-76 287.3 208 67.8
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 2.1e-75 286.2 209 68.9
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 6.0e-75 284.6 188 72.3
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 2.5e-73 279.3 188 70.7
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 9.5e-73 277.3 174 77.6
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 9.5e-73 277.3 180 77.8
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 2.3e-71 272.7 183 73.8
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.1e-71 272.3 200 67.0
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 4.0e-71 271.9 211 67.3
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 1.2e-70 270.4 217 63.6
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 5.8e-70 268.1 165 80.0
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.3e-69 266.9 217 64.5
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.2e-69 266.2 177 72.9
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.9e-69 265.8 192 68.2
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 8.3e-69 264.2 203 62.6
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 1.1e-68 263.8 192 66.1
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 1.4e-68 263.5 183 71.0
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 1.9e-68 263.1 205 62.0
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 9.2e-68 260.8 207 61.8
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 2.1e-67 259.6 191 64.4
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.7e-67 259.2 191 67.0
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 3.5e-67 258.8 192 64.1
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 4.6e-67 258.5 203 61.6
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 1.3e-66 256.9 192 63.0
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 2.3e-66 256.1 192 63.5
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 2.3e-66 256.1 191 64.4
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 3.0e-66 255.8 207 60.9
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 5.1e-66 255.0 209 59.8
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 5.1e-66 255.0 209 59.3
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 6.6e-66 254.6 209 59.3
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 1.5e-65 253.4 209 59.3
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 1.5e-65 253.4 209 58.9
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 1.5e-65 253.4 209 58.9
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 1.9e-65 253.1 192 62.5
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 1.9e-65 253.1 209 59.8
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 5.6e-65 251.5 184 69.6
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 2.1e-64 249.6 192 62.0
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 2.8e-64 249.2 209 57.9
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 3.6e-64 248.8 191 60.7
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 3.6e-64 248.8 192 60.4
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 4.7e-64 248.4 206 59.2
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 3.4e-62 242.3 224 56.7
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 9.9e-62 240.7 206 59.2
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 1.9e-60 236.5 187 63.6
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 6.2e-56 221.5 166 63.3
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 1.5e-49 200.3 140 67.1
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 6.2e-48 194.9 177 55.9
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 6.2e-48 194.9 177 55.9
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 5.8e-46 188.3 118 78.0
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 3.5e-43 179.1 389 33.4
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 1.8e-39 166.8 109 76.1
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 1.2e-38 164.1 139 59.0
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 5.8e-38 161.8 90 85.6
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 5.8e-38 161.8 107 71.0
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 9.3e-36 154.5 118 66.1
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.2e-30 137.5 91 73.6
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 4.2e-28 129.0 172 36.6
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 5.1e-26 122.1 160 40.6
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 6.3e-24 115.2 116 55.2
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 5.3e-23 112.1 64 85.9
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 1.2e-22 110.9 150 38.0
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 4.2e-20 102.4 71 74.6
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 4.2e-20 102.4 63 77.8
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 1.6e-19 100.5 62 80.6
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 3.9e-18 95.9 62 72.6
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 5.1e-18 95.5 82 53.7
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 7.4e-17 91.7 63 73.0
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 1.8e-07 60.5 52 63.5
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 4.1e-07 59.3 51 54.9
QL04p094472 Quercus lobata HOM05D002505 ORTHO05D006559 2.0e-06 57.0 31 80.6


User provided reference genes

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