Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 1.8e-197 692.6 393 100.0
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 2.9e-131 472.6 401 69.3
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 9.3e-130 467.6 396 66.9
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 6.0e-129 464.9 400 68.2
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 1.3e-128 463.8 400 67.5
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 1.8e-128 463.4 400 68.0
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 3.0e-128 462.6 400 67.5
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 2.5e-127 459.5 400 65.2
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 4.8e-126 455.3 417 63.8
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 6.9e-125 451.4 397 65.0
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 3.4e-124 449.1 397 64.5
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 6.7e-120 434.9 443 63.7
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 1.9e-119 433.3 392 64.8
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 2.5e-119 433.0 394 63.7
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 4.3e-119 432.2 403 63.0
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 4.3e-119 432.2 404 62.1
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 4.3e-119 432.2 409 60.6
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 5.7e-119 431.8 394 63.7
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 7.4e-119 431.4 406 62.6
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 5.3e-117 425.2 401 63.6
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 3.4e-116 422.5 452 56.9
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 7.6e-116 421.4 401 61.8
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 1.0e-115 421.0 467 56.3
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 1.0e-115 421.0 462 56.9
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.3e-115 420.6 397 62.7
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.7e-115 420.2 386 64.5
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 2.9e-115 419.5 401 63.6
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 6.5e-115 418.3 392 66.1
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 8.5e-115 417.9 384 66.7
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 1.9e-114 416.8 399 60.7
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 3.6e-113 412.5 399 62.2
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 2.3e-112 409.8 405 59.0
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 3.0e-112 409.5 386 61.7
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 3.9e-112 409.1 393 62.8
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 1.1e-111 407.5 402 64.9
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 9.7e-111 404.4 390 60.8
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 9.7e-111 404.4 382 61.0
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 2.8e-110 402.9 407 60.4
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 3.7e-110 402.5 406 58.9
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 8.2e-110 401.4 388 58.5
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 8.2e-110 401.4 397 59.9
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 8.2e-110 401.4 414 56.8
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 3.1e-109 399.4 392 61.2
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 9.1e-109 397.9 378 60.3
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 2.6e-108 396.4 399 58.6
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 3.4e-108 396.0 386 61.1
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 4.5e-108 395.6 378 59.5
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.0e-107 394.4 400 56.2
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 1.3e-107 394.0 395 58.2
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 3.8e-107 392.5 403 57.6
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 8.5e-107 391.3 403 59.3
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 2.5e-106 389.8 379 58.3
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 5.5e-106 388.7 408 56.4
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 7.2e-106 388.3 379 58.8
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 9.4e-106 387.9 398 55.3
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 9.4e-106 387.9 398 58.0
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 9.4e-106 387.9 367 62.4
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 1.2e-105 387.5 381 57.2
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 3.6e-105 386.0 401 55.4
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 1.0e-104 384.4 385 60.8
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 1.8e-104 383.6 394 58.9
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 2.3e-104 383.3 379 61.7
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 6.7e-104 381.7 378 58.2
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 6.7e-104 381.7 392 57.9
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 8.8e-104 381.3 393 57.8
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 8.8e-104 381.3 389 59.6
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 1.5e-103 380.6 379 58.3
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 2.0e-103 380.2 402 55.0
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 2.6e-103 379.8 391 57.8
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 3.3e-103 379.4 429 53.6
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 1.3e-102 377.5 406 56.4
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 1.7e-102 377.1 369 57.7
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 1.7e-102 377.1 422 54.0
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 1.7e-102 377.1 388 57.5
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 2.2e-102 376.7 396 59.1
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 2.8e-102 376.3 398 61.8
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 8.2e-102 374.8 393 57.3
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 1.1e-101 374.4 376 61.4
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 1.5e-100 370.5 381 57.7
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 1.5e-100 370.5 406 55.7
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 1.0e-99 367.9 380 57.9
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 8.5e-99 364.8 401 55.9
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 2.7e-97 359.8 335 67.8
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 4.7e-97 359.0 392 56.4
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 1.8e-96 357.1 366 62.3
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 6.7e-96 355.1 392 53.8
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 8.8e-96 354.8 412 55.6
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 8.8e-96 354.8 392 54.3
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 2.0e-95 353.6 397 51.9
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 2.6e-95 353.2 391 53.7
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 1.3e-94 350.9 375 55.2
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 1.7e-94 350.5 362 58.0
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 4.8e-94 349.0 340 60.9
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 6.3e-94 348.6 388 52.6
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 2.4e-93 346.7 393 52.2
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 5.0e-91 339.0 382 52.4
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 1.9e-90 337.0 425 52.5
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 3.6e-89 332.8 621 38.3
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 5.2e-88 328.9 472 47.5
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 6.7e-88 328.6 392 54.3
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 4.8e-86 322.4 392 53.6
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 2.8e-78 296.6 405 47.9
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 5.9e-76 288.9 402 45.8
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 1.6e-73 280.8 376 49.2
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 9.2e-69 265.0 164 79.9
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 2.2e-62 243.8 142 84.5
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 2.3e-56 223.8 135 79.3
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 1.6e-52 211.1 308 49.7
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 3.5e-52 209.9 358 39.1
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 3.7e-46 189.9 390 35.9
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 3.7e-46 189.9 383 33.2
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 4.1e-45 186.4 386 34.5
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 4.6e-44 183.0 378 36.8
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 3.6e-41 173.3 112 76.8
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 5.4e-29 132.9 158 57.6
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 7.8e-28 129.0 228 33.8
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 1.7e-27 127.9 182 40.7
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 2.6e-23 114.0 238 42.4
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 1.3e-22 111.7 79 67.1
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 8.4e-22 109.0 59 89.8
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 2.4e-21 107.5 190 33.2
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 2.7e-20 104.0 64 76.6
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 1.3e-17 95.1 61 75.4
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 4.8e-17 93.2 178 33.7
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 5.8e-15 86.3 50 84.0


User provided reference genes

Program Settings