Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 5.7e-242 840.5 423 100.0
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 2.3e-211 738.8 428 84.8
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 5.4e-208 727.6 426 84.0
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 1.2e-207 726.5 423 84.9
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 5.6e-205 717.6 424 82.8
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 9.5e-205 716.8 425 83.1
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 3.6e-204 714.9 431 81.7
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 8.0e-204 713.8 427 82.0
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 8.0e-204 713.8 428 82.2
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 2.3e-203 712.2 428 82.5
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 6.8e-203 710.7 423 83.7
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 6.8e-203 710.7 421 83.6
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 5.7e-202 707.6 428 81.8
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 2.4e-200 702.2 427 81.3
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 4.3e-197 691.4 429 79.7
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.6e-196 689.5 433 79.0
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 2.1e-196 689.1 440 79.5
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 2.8e-196 688.7 411 83.5
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 3.6e-196 688.3 429 79.3
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 2.3e-195 685.6 421 79.6
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.3e-195 685.6 437 79.4
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 1.5e-194 682.9 424 79.0
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 2.6e-194 682.2 431 78.4
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 3.4e-194 681.8 426 79.6
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 3.4e-194 681.8 400 82.2
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 4.4e-194 681.4 438 78.8
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 6.4e-193 677.6 428 78.7
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 8.3e-193 677.2 428 79.0
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 1.1e-192 676.8 448 76.6
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 1.1e-192 676.8 423 78.5
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 2.4e-192 675.6 428 78.5
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 9.2e-192 673.7 410 80.5
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.6e-191 672.9 430 78.1
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.6e-191 672.9 428 78.3
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 4.6e-191 671.4 429 77.4
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 7.8e-191 670.6 463 72.4
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 2.3e-190 669.1 423 78.5
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 3.0e-190 668.7 429 77.6
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 8.6e-190 667.2 402 81.6
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 8.6e-190 667.2 424 77.6
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 1.5e-189 666.4 425 78.1
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 2.5e-189 665.6 402 81.3
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 3.3e-189 665.2 400 81.0
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 4.3e-189 664.8 432 76.4
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.2e-188 663.3 429 76.7
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.2e-188 663.3 423 77.3
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 2.8e-188 662.1 432 76.4
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 1.1e-187 660.2 404 77.5
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 1.8e-187 659.4 398 79.1
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 3.1e-187 658.7 392 81.6
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 3.1e-187 658.7 404 78.5
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 4.0e-187 658.3 398 79.6
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 8.9e-187 657.1 404 77.5
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 2.0e-186 656.0 418 75.8
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 2.0e-186 656.0 401 78.8
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 2.6e-186 655.6 425 76.0
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 4.4e-186 654.8 421 76.0
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 7.5e-186 654.1 418 75.8
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 9.9e-186 653.7 404 77.0
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 1.3e-185 653.3 377 84.9
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 1.3e-185 653.3 421 75.3
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 2.9e-185 652.1 399 77.4
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 3.7e-185 651.7 405 77.3
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 8.3e-185 650.6 402 77.6
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 4.1e-184 648.3 402 77.6
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 3.5e-183 645.2 458 72.9
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 4.6e-183 644.8 397 76.8
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 7.8e-183 644.0 402 76.9
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 5.1e-182 641.3 420 74.3
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.5e-181 639.8 396 77.5
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 2.5e-181 639.0 425 72.5
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 1.6e-180 636.3 393 79.6
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 9.9e-178 627.1 420 73.8
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 1.3e-177 626.7 411 75.7
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 1.3e-177 626.7 420 73.8
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 3.2e-176 622.1 420 73.3
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 3.2e-176 622.1 420 73.3
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 7.1e-176 620.9 375 82.7
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 7.1e-176 620.9 394 77.2
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 3.9e-174 615.1 404 75.2
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 3.9e-174 615.1 394 74.4
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 3.9e-174 615.1 570 59.5
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 9.6e-173 610.5 387 75.2
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 1.2e-170 603.6 385 79.5
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.3e-169 600.1 404 73.8
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.7e-169 599.7 465 68.2
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 2.4e-168 595.9 401 70.8
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 6.0e-167 591.3 391 75.4
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 2.3e-166 589.3 395 71.4
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 6.9e-163 577.8 391 73.9
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 2.2e-161 572.8 395 71.4
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 1.1e-160 570.5 402 72.9
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 3.2e-160 568.9 331 82.5
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 8.1e-156 554.3 344 77.0
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 1.7e-153 546.6 404 68.3
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.9e-153 545.8 395 69.6
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.0e-150 535.8 329 76.3
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 5.3e-147 525.0 334 78.7
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 5.3e-147 525.0 378 66.4
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 1.5e-146 523.5 396 61.9
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 5.8e-146 521.5 387 64.9
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 9.3e-144 514.2 381 64.6
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 1.9e-136 490.0 418 61.7
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 1.1e-133 480.7 349 72.5
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 7.4e-133 478.0 334 69.2
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.0e-129 467.6 299 76.3
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 2.1e-119 433.3 377 56.0
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 6.7e-118 428.3 309 70.6
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 2.2e-116 423.3 302 71.2
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 1.2e-114 417.5 277 73.6
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 4.0e-110 402.5 357 61.1
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 3.6e-103 379.4 318 59.1
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 3.4e-101 372.9 408 48.3
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.3e-100 370.9 228 78.9
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 5.0e-97 359.0 404 46.8
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.3e-89 334.3 399 45.1
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 3.4e-69 266.5 170 70.0
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 2.4e-67 260.4 229 62.4
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 2.3e-65 253.8 282 47.2
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 7.6e-61 238.8 129 86.8
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 4.6e-58 229.6 148 77.7
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 3.6e-55 219.9 122 85.2
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 1.4e-54 218.0 159 67.3
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 9.3e-51 205.3 339 35.7
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-47 193.0 167 58.1
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 9.6e-40 168.7 142 62.7
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 8.2e-31 139.0 132 60.6
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 3.4e-29 133.7 84 73.8
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 3.4e-29 133.7 416 30.5
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 7.6e-29 132.5 86 77.9
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.6e-26 124.8 95 66.3
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.8e-20 103.6 64 70.3
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 7.2e-19 99.4 94 53.2
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.1e-14 85.5 73 64.4
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 2.4e-14 84.3 49 75.5
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 1.5e-13 81.6 63 65.1
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 8.5e-12 75.9 62 58.1
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 8.8e-09 65.9 44 68.2
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 2.0e-08 64.7 43 69.8
AUR62000670 Chenopodium quinoa HOM05D001135 ORTHO05D001005 1.3e-07 62.0 47 66.0
AUR62039850 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.3e-07 62.0 74 54.1
ATR0721G059 Amborella trichopoda HOM05D005532 ORTHO05D006873 4.8e-07 60.1 75 45.3


User provided reference genes

Program Settings