Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1900.6 949 100.0
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1394.8 930 72.2
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1379.0 933 69.7
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1379.0 931 71.1
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1375.5 931 70.1
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1369.4 937 69.7
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1355.5 930 69.2
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1338.6 929 68.9
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1338.6 932 68.5
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1338.2 929 68.8
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1337.8 929 68.7
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1336.6 939 67.6
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1333.9 943 68.3
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1330.5 929 68.7
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1328.5 941 67.8
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1310.4 951 66.7
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1306.2 938 66.1
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1302.3 908 68.7
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1284.2 974 64.5
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1281.2 934 64.9
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1271.9 927 65.4
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1266.1 926 65.4
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 0.0e+00 1261.5 838 70.6
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1259.2 822 71.5
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1259.2 952 63.4
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1259.2 932 65.1
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1258.0 938 64.5
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 0.0e+00 1246.9 926 65.4
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1239.2 903 66.6
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 0.0e+00 1238.4 818 71.6
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 0.0e+00 1222.2 931 62.3
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 0.0e+00 1216.4 945 62.9
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 0.0e+00 1213.7 939 63.3
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 0.0e+00 1211.4 937 62.5
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 0.0e+00 1208.0 940 61.8
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 0.0e+00 1205.7 874 68.1
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 0.0e+00 1197.6 938 61.2
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 0.0e+00 1188.3 940 61.0
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 0.0e+00 1184.5 834 67.4
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1178.7 794 69.4
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 0.0e+00 1178.3 928 61.7
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1176.8 938 61.5
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1174.8 940 61.4
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 0.0e+00 1164.1 928 60.7
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1159.4 938 60.4
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 0.0e+00 1159.1 932 59.4
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1152.5 940 59.8
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 0.0e+00 1142.1 936 61.3
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 0.0e+00 1139.4 948 58.3
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 0.0e+00 1138.3 914 60.3
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1135.6 926 60.2
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 0.0e+00 1130.5 926 59.6
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 0.0e+00 1128.2 933 59.7
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1127.1 901 61.4
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 0.0e+00 1122.1 931 59.9
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 0.0e+00 1119.4 934 59.3
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 0.0e+00 1117.8 941 58.7
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 0.0e+00 1117.1 940 61.0
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1105.9 898 59.9
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 0.0e+00 1104.0 716 72.9
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 0.0e+00 1103.6 936 59.5
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 0.0e+00 1099.0 947 58.1
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 0.0e+00 1097.8 920 58.3
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 0.0e+00 1095.1 928 57.9
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 0.0e+00 1080.1 737 68.9
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 6.5e-312 1074.3 857 61.0
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 4.9e-310 1067.8 932 57.3
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 5.4e-309 1064.3 932 57.0
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 4.6e-308 1061.2 935 56.3
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 1.0e-307 1060.1 937 55.0
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 7.3e-306 1053.9 934 55.9
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 1.4e-304 1049.7 819 61.5
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 1.4e-304 1049.7 819 61.5
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 2.0e-303 1045.8 913 55.9
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 2.2e-302 1042.3 938 57.5
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 6.2e-297 1024.2 824 60.6
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.2e-293 1011.9 745 63.9
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 3.5e-292 1008.4 814 60.8
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 6.9e-288 994.2 954 53.6
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 2.6e-287 992.3 927 54.2
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 7.4e-282 974.2 918 54.0
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 3.4e-279 965.3 722 63.9
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 6.1e-276 954.5 816 59.2
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 2.6e-271 939.1 635 69.0
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 2.9e-270 935.6 905 51.5
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 1.9e-269 932.9 937 48.6
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 1.4e-256 890.2 925 50.1
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.2e-254 882.9 626 66.6
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 1.3e-246 857.1 941 50.4
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 9.8e-218 761.1 490 72.9
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 6.4e-209 731.9 649 55.3
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 8.1e-196 688.3 576 56.9
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 1.7e-193 680.6 875 40.9
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 5.4e-184 649.0 438 67.8
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 9.6e-173 611.7 566 56.0
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 5.0e-161 572.8 457 61.3
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 4.1e-155 553.1 510 53.9
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.3e-153 548.1 525 52.4
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 1.2e-135 488.4 387 63.0
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 2.3e-126 457.6 1032 32.0
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 1.7e-124 451.4 381 58.8
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 4.9e-108 396.7 307 60.9
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.7e-90 337.8 282 61.7
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 3.0e-81 307.8 237 65.4
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 8.1e-79 299.7 268 58.6
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.2e-74 285.8 210 65.7
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 4.5e-69 267.3 268 47.4
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 8.7e-65 253.1 276 47.5
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 1.9e-51 208.8 265 44.9
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 1.3e-36 159.5 158 53.2
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 3.8e-36 157.9 134 57.5
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 1.1e-35 156.4 105 70.5
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 2.5e-35 155.2 158 51.9
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 9.4e-35 153.3 112 62.5
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 1.5e-29 136.0 851 23.1
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 8.5e-28 130.2 222 35.6
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 5.9e-21 107.5 95 55.8
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 3.2e-19 101.7 71 62.0
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 7.2e-19 100.5 86 58.1
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 3.1e-14 85.1 281 27.8
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 2.9e-12 78.6 50 70.0
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 6.5e-12 77.4 89 51.7
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.5e-11 76.3 53 66.0
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 6.1e-10 70.9 61 50.8


User provided reference genes

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