Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 0.0e+00 1091.6 565 100.0
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 3.9e-230 801.6 572 74.5
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 2.5e-229 798.9 568 73.8
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.7e-225 786.2 569 72.6
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 2.9e-225 785.4 564 71.5
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 2.5e-224 782.3 569 72.2
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 2.1e-223 779.2 569 71.9
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 1.5e-221 773.1 562 72.8
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 9.6e-221 770.4 569 71.2
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.3e-220 770.0 571 71.8
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 1.6e-220 769.6 566 71.7
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 3.7e-220 768.5 561 70.8
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 1.5e-218 763.1 571 69.4
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 3.8e-217 758.4 566 70.5
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 5.0e-217 758.1 566 71.2
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 2.5e-216 755.7 566 70.0
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 2.5e-216 755.7 568 69.9
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 9.3e-216 753.8 561 70.6
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 1.8e-214 749.6 565 68.5
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 7.4e-213 744.2 565 68.1
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 1.6e-212 743.0 564 68.4
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 3.7e-212 741.9 561 68.6
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 1.4e-211 740.0 563 69.4
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.4e-210 735.3 561 68.3
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 4.5e-210 734.9 550 71.5
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 7.7e-210 734.2 604 66.6
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 1.3e-209 733.4 565 68.7
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 2.2e-209 732.6 564 69.9
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 1.8e-206 723.0 565 67.6
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.0e-205 719.5 572 67.1
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 2.0e-205 719.5 573 66.8
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.3e-205 718.8 572 67.0
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 7.4e-205 717.6 563 68.2
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.3e-204 716.8 572 66.8
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 1.3e-204 716.8 563 67.9
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 1.7e-204 716.5 563 67.5
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 3.7e-204 715.3 563 67.0
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 4.8e-204 714.9 503 74.0
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.3e-204 714.5 569 67.5
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 4.1e-203 711.8 564 67.4
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 6.9e-203 711.1 564 66.7
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 1.5e-202 709.9 521 72.2
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 5.9e-202 708.0 569 65.9
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 7.7e-202 707.6 569 65.7
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 2.9e-201 705.7 568 65.5
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 2.9e-201 705.7 564 66.5
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 2.9e-201 705.7 573 65.8
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.5e-201 704.5 561 66.8
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 6.5e-201 704.5 582 66.0
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 1.1e-200 703.7 498 71.9
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 5.5e-200 701.4 566 66.8
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 5.5e-200 701.4 573 65.1
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 9.4e-200 700.7 569 65.6
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 2.1e-199 699.5 565 66.9
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 2.0e-197 693.0 566 66.1
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 4.4e-197 691.8 565 65.0
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 1.7e-196 689.9 565 64.2
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 2.2e-196 689.5 583 64.0
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 6.3e-196 688.0 561 66.0
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 2.4e-195 686.0 570 65.3
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 1.2e-194 683.7 565 63.5
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 2.0e-194 682.9 564 63.8
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 3.5e-194 682.2 569 62.6
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 1.3e-193 680.2 561 63.6
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 1.3e-193 680.2 561 63.6
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.3e-193 680.2 568 65.1
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 2.9e-193 679.1 568 64.6
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 3.8e-193 678.7 564 63.3
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 5.0e-193 678.3 561 63.3
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 5.0e-193 678.3 560 65.2
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 6.5e-193 677.9 572 62.8
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 8.5e-193 677.6 567 64.6
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 5.5e-192 674.9 571 64.1
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 7.2e-192 674.5 565 63.2
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 1.6e-191 673.3 561 62.9
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 3.6e-191 672.2 561 62.7
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 3.6e-191 672.2 565 64.6
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 8.0e-191 671.0 565 62.5
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 6.7e-190 667.9 571 63.7
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 6.7e-190 667.9 590 60.7
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 6.7e-190 667.9 593 62.6
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 4.4e-189 665.2 565 64.1
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 9.1e-187 657.5 476 71.4
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 1.3e-185 653.7 583 60.5
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 1.9e-184 649.8 564 61.2
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 4.7e-183 645.2 565 61.1
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 2.2e-180 636.3 606 57.8
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 4.8e-180 635.2 461 70.7
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 1.8e-179 633.3 504 67.5
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 2.2e-177 626.3 644 56.5
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 3.2e-176 622.5 573 60.7
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 7.2e-176 621.3 470 68.7
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 1.2e-175 620.5 576 58.9
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 9.8e-173 610.9 583 59.0
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 6.3e-172 608.2 567 59.8
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 1.7e-169 600.1 502 63.1
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 7.3e-168 594.7 503 63.2
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 2.7e-162 576.2 567 57.3
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 7.8e-162 574.7 484 64.0
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 3.9e-161 572.4 569 58.9
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 3.1e-158 562.8 549 58.3
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 1.3e-153 547.4 532 55.6
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 2.6e-149 533.1 475 60.6
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.3e-148 530.8 349 75.6
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 2.4e-147 526.6 570 51.9
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 2.1e-146 523.5 592 53.0
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 1.8e-142 510.4 349 73.6
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 8.4e-140 501.5 513 53.6
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 5.1e-137 492.3 334 74.0
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 3.8e-132 476.1 403 64.0
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 3.4e-125 453.0 523 50.7
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 2.4e-118 430.3 484 50.6
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 4.5e-117 426.0 366 62.3
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 1.2e-114 417.9 242 85.1
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 1.2e-114 417.9 242 85.1
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.0e-113 414.8 240 87.1
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 2.9e-108 396.7 413 55.4
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.1e-104 384.8 234 79.9
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 4.8e-103 379.4 396 53.8
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 5.3e-102 375.9 305 62.3
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 5.3e-102 375.9 411 53.8
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 5.5e-99 365.9 282 66.3
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.8e-97 360.9 331 60.4
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 7.4e-96 355.5 437 50.8
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.2e-93 348.2 192 89.1
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 7.7e-93 345.5 393 52.4
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 4.8e-87 326.2 568 37.5
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 5.3e-86 322.8 379 52.2
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 1.1e-78 298.5 579 35.8
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 5.3e-78 296.2 159 89.3
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 5.2e-65 253.1 459 39.4
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 4.8e-63 246.5 143 83.9
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.5e-61 240.4 143 85.3
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 5.0e-60 236.5 239 57.7
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.5e-60 236.1 143 83.2
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 5.5e-59 233.0 134 87.3
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.9e-57 225.7 128 89.1
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-52 210.7 524 30.2
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 4.3e-51 206.8 233 51.5
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 6.6e-44 183.0 495 30.1
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.1e-35 155.6 88 86.4
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.9e-33 146.0 92 78.3
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.4e-30 137.9 161 50.3
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 9.2e-30 136.0 170 47.6
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.2e-26 125.6 205 42.0
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 2.9e-23 114.4 430 28.4
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 1.1e-22 112.5 129 51.9
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.2e-21 109.0 136 49.3
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 6.0e-21 106.7 254 32.3
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 4.7e-18 97.1 257 29.6
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.4e-17 94.7 52 88.5
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 3.4e-16 90.9 87 59.8
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 3.8e-15 87.4 45 88.9
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 1.9e-06 58.5 32 96.9
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 1.9e-06 58.5 199 27.1
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 7.1e-06 56.6 320 25.6


User provided reference genes

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