Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031460001 Vitis vinifera HOM05D006252 ORTHO05D007909 1.6e-80 302.8 163 100.0
Cpa.g.sc47.1 Carica papaya HOM05D006252 ORTHO05D007909 6.7e-74 280.8 162 92.0
Manes.11G152500 Manihot esculenta HOM05D006252 ORTHO05D007909 2.2e-72 275.8 163 90.2
CSS0004051 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 3.7e-72 275.0 162 90.1
CSS0044427 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 3.7e-72 275.0 162 90.1
Thecc.09G298300 Theobroma cacao HOM05D006252 ORTHO05D007909 3.7e-72 275.0 162 90.1
Nn6g35212 Nelumbo nucifera HOM05D006252 ORTHO05D007909 1.4e-71 273.1 163 88.3
ATR0043G002 Amborella trichopoda HOM05D006252 ORTHO05D007909 1.8e-71 272.7 160 89.4
MSTRG.18705 Avicennia marina HOM05D006252 ORTHO05D007909 1.8e-71 272.7 162 89.5
Ciclev10029219m.g Citrus clementina HOM05D006252 ORTHO05D007909 3.1e-71 271.9 160 88.8
CDE08G0788 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 9.0e-71 270.4 163 86.5
Cc01_g10250 Coffea canephora HOM05D006252 ORTHO05D007909 1.5e-70 269.6 162 88.3
Cc08_g04460 Coffea canephora HOM05D006252 ORTHO05D007909 2.0e-70 269.2 162 87.7
CDE02G0854 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 2.6e-70 268.9 163 85.9
CiPaw.13G122300 Carya illinoinensis HOM05D006252 ORTHO05D007909 3.4e-70 268.5 160 89.4
CsaV3_1G013140 Cucumis sativus L. HOM05D006252 ORTHO05D007909 3.4e-70 268.5 160 88.8
QL01p014977 Quercus lobata HOM05D006252 ORTHO05D007909 3.4e-70 268.5 159 88.7
COL.COLO4_19198 Corchorus olitorius HOM05D006252 ORTHO05D007909 5.9e-70 267.7 161 86.3
arahy.Tifrunner.gnm1.ann1.4A8W5C Arachis hypogaea HOM05D006252 ORTHO05D007909 7.7e-70 267.3 161 87.0
arahy.Tifrunner.gnm1.ann1.Q498P0 Arachis hypogaea HOM05D006252 ORTHO05D007909 7.7e-70 267.3 161 87.0
Gorai.009G090100 Gossypium raimondii HOM05D006252 ORTHO05D007909 7.7e-70 267.3 162 88.9
ClCG03G002460 Citrullus lanatus HOM05D006252 ORTHO05D007909 1.3e-69 266.5 160 88.8
Hma1.2p1_0051F.1_g029510 Hydrangea macrophylla HOM05D006252 ORTHO05D007909 1.3e-69 266.5 159 88.7
Atru.chr3.3505 Acer truncatum HOM05D006252 ORTHO05D007909 2.2e-69 265.8 160 86.9
MELO3C004995.2 Cucumis melo HOM05D006252 ORTHO05D007909 2.2e-69 265.8 159 88.7
Glyma.11G192500 Glycine max HOM05D006252 ORTHO05D007909 2.2e-69 265.8 161 87.0
Gohir.D05G088000 Gossypium hirsutum HOM05D006252 ORTHO05D007909 2.2e-69 265.8 162 88.3
Actinidia07187 Actinidia chinensis HOM05D006252 ORTHO05D007909 3.8e-69 265.0 162 85.8
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 3.8e-69 265.0 162 84.6
Gohir.A05G086700 Gossypium hirsutum HOM05D006252 ORTHO05D007909 5.0e-69 264.6 162 87.7
Sed0008981 Sechium edule HOM05D006252 ORTHO05D007909 6.5e-69 264.2 159 86.2
VMungo1127G0830 Vigna mungo HOM05D006252 ORTHO05D007909 6.5e-69 264.2 161 85.7
Potri.004G217000 Populus trichocarpa HOM05D006252 ORTHO05D007909 8.5e-69 263.8 160 86.2
AL5G23350 Arabidopsis lyrata HOM05D006252 ORTHO05D007909 1.1e-68 263.5 161 83.2
Glyma.12G081500 Glycine max HOM05D006252 ORTHO05D007909 1.1e-68 263.5 161 85.1
TAR633G0073 Trochodendron aralioides HOM05D006252 ORTHO05D007909 1.9e-68 262.7 162 85.8
Cfa010288 Carpinus fangiana HOM05D006252 ORTHO05D007909 2.5e-68 262.3 160 88.1
Sabra09G0002100 Salix brachista HOM05D006252 ORTHO05D007909 2.5e-68 262.3 163 85.3
Sabra04G0147700 Salix brachista HOM05D006252 ORTHO05D007909 3.2e-68 261.9 160 85.6
MBI02_g05768_MAGBIO Magnolia biondii HOM05D006252 ORTHO05D007909 5.5e-68 261.2 148 91.9
unitig_746.g26615 Utricularia gibba HOM05D006252 ORTHO05D007909 7.2e-68 260.8 162 84.6
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 9.4e-68 260.4 162 84.6
PSO063G5667 Papaver somniferum HOM05D006252 ORTHO05D007909 9.4e-68 260.4 160 85.0
HPP92_003365 Vanilla planifolia HOM05D006252 ORTHO05D007909 1.6e-67 259.6 161 82.6
BcaB05g23061 Brassica carinata HOM05D006252 ORTHO05D007909 2.1e-67 259.2 159 84.3
BcaC09g49661 Brassica carinata HOM05D006252 ORTHO05D007909 2.1e-67 259.2 159 84.3
C01p34110 Brassica napus HOM05D006252 ORTHO05D007909 2.1e-67 259.2 159 84.3
BolC1t03381H Brassica oleracea HOM05D006252 ORTHO05D007909 2.1e-67 259.2 159 84.3
ECA233G2302 Erigeron canadensis HOM05D006252 ORTHO05D007909 2.1e-67 259.2 161 83.9
THA.LOC104810882 Tarenaya hassleriana HOM05D006252 ORTHO05D007909 2.1e-67 259.2 161 83.2
TWI79G1340 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 2.1e-67 259.2 162 84.0
vmacro14388 Vaccinium macrocarpon HOM05D006252 ORTHO05D007909 2.7e-67 258.8 162 82.1
PGR102G1698 Punica granatum HOM05D006252 ORTHO05D007909 3.6e-67 258.5 160 85.6
Thhalv10002672m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 4.6e-67 258.1 159 82.4
PSO339G3106 Papaver somniferum HOM05D006252 ORTHO05D007909 4.6e-67 258.1 160 83.8
Phvul.011G086500 Phaseolus vulgaris HOM05D006252 ORTHO05D007909 7.9e-67 257.3 161 83.2
Sp5g16320 Schrenkiella parvula HOM05D006252 ORTHO05D007909 7.9e-67 257.3 159 83.0
A01p26720 Brassica napus HOM05D006252 ORTHO05D007909 1.0e-66 256.9 159 83.6
BraA01t02602Z Brassica rapa HOM05D006252 ORTHO05D007909 1.0e-66 256.9 159 83.6
CARHR151120 Cardamine hirsuta HOM05D006252 ORTHO05D007909 1.0e-66 256.9 161 80.7
Nitab4.5_0005665g0020 Nicotiana tabacum HOM05D006252 ORTHO05D007909 1.0e-66 256.9 162 82.1
Solyc11g066410.2 Solanum lycopersicum HOM05D006252 ORTHO05D007909 1.0e-66 256.9 162 80.9
HanXRQChr02g0055341 Helianthus annuus HOM05D006252 ORTHO05D007909 1.4e-66 256.5 161 83.2
SalBow6G6884 Salvia bowleyana HOM05D006252 ORTHO05D007909 1.8e-66 256.1 175 78.9
TWI75G0936 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 1.8e-66 256.1 162 84.6
Aqoxy1G01090 Aquilegia oxysepala HOM05D006252 ORTHO05D007909 2.3e-66 255.8 160 81.9
AT3G44890 Arabidopsis thaliana HOM05D006252 ORTHO05D007909 3.0e-66 255.4 161 79.5
Sopen11g026160 Solanum pennellii HOM05D006252 ORTHO05D007909 5.1e-66 254.6 162 79.6
Aa31LG4G14200 Aethionema arabicum HOM05D006252 ORTHO05D007909 6.7e-66 254.2 160 80.0
Rhsim01G0210400 Rhododendron simsii HOM05D006252 ORTHO05D007909 1.1e-65 253.4 161 81.4
SGA_v2.0_scaffold277G46698 Striga asiatica HOM05D006252 ORTHO05D007909 1.1e-65 253.4 162 82.1
FvH4_3g30600 Fragaria vesca HOM05D006252 ORTHO05D007909 1.5e-65 253.1 161 83.2
FAN11G0619 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.5e-65 253.1 161 83.2
FAN16G0084 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.5e-65 253.1 161 83.2
FAN21G1285 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.5e-65 253.1 161 83.2
PGSC0003DMG400000456 Solanum tuberosum HOM05D006252 ORTHO05D007909 1.5e-65 253.1 162 78.4
AUR62014977 Chenopodium quinoa HOM05D006252 ORTHO05D007909 2.0e-65 252.7 163 79.8
AUR62029150 Chenopodium quinoa HOM05D006252 ORTHO05D007909 2.0e-65 252.7 163 78.5
Lalb_Chr19g0136901 Lupinus albus HOM05D006252 ORTHO05D007909 2.0e-65 252.7 161 82.6
Lalb_Chr03g0027721 Lupinus albus HOM05D006252 ORTHO05D007909 2.5e-65 252.3 161 81.4
EL10Ac9g22626 Beta vulgaris HOM05D006252 ORTHO05D007909 3.3e-65 251.9 159 81.8
Carub.0005s1063 Capsella rubella HOM05D006252 ORTHO05D007909 3.3e-65 251.9 161 78.3
FAN25G2218 Fragaria x ananassa HOM05D006252 ORTHO05D007909 3.3e-65 251.9 161 82.6
RcHm_v2.0_Chr5g0056671 Rosa chinensis HOM05D006252 ORTHO05D007909 5.7e-65 251.1 160 83.8
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 7.4e-65 250.8 154 83.8
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 2.8e-64 248.8 155 82.6
Ca_19323_v3 Cicer arietinum L. HOM05D006252 ORTHO05D007909 4.8e-64 248.1 161 78.3
Lj2A1006G34 Lonicera japonica HOM05D006252 ORTHO05D007909 1.4e-63 246.5 161 78.3
Lj3g0021853 Lotus japonicus HOM05D006252 ORTHO05D007909 1.8e-63 246.1 159 79.9
MD03G1128600 Malus domestica HOM05D006252 ORTHO05D007909 1.8e-63 246.1 160 81.9
MD11G1148800 Malus domestica HOM05D006252 ORTHO05D007909 5.3e-63 244.6 160 81.9
Psat7g223760 Pisum sativum HOM05D006252 ORTHO05D007909 6.9e-63 244.2 161 78.3
Prupe.6G113200 Prunus persica HOM05D006252 ORTHO05D007909 9.1e-63 243.8 160 80.6
TPR.G36832 Trifolium pratense HOM05D006252 ORTHO05D007909 1.3e-61 240.0 161 76.4
Medtr4g057210 Medicago truncatula HOM05D006252 ORTHO05D007909 1.7e-61 239.6 161 78.3
Hund01525 Selenicereus undatus HOM05D006252 ORTHO05D007909 5.5e-60 234.6 157 79.6
Dinv16227 Davidia involucrata HOM05D006252 ORTHO05D007909 5.1e-58 228.0 137 89.1
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 4.4e-57 224.9 160 70.6
AagrBONN_evm.TU.Sc2ySwM_362.2261 Anthoceros agrestis HOM05D006252 ORTHO05D007909 2.0e-46 189.5 156 59.0
Mapoly0005s0034 Marchantia polymorpha HOM05D006252 ORTHO05D007909 2.6e-46 189.1 160 59.4
Haze_24363 Corylus avellana HOM05D006252 ORTHO05D007909 9.4e-44 180.6 105 89.5
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 5.7e-41 171.4 157 54.8
Pp3c1_5300 Physcomitrium patens HOM05D006252 ORTHO05D007909 5.3e-39 164.9 156 55.1
Pp3c1_5320 Physcomitrium patens HOM05D006252 ORTHO05D007909 5.3e-39 164.9 156 55.1
Sc21g0000330 Simmondsia chinensis HOM05D006252 ORTHO05D007909 1.2e-38 163.7 102 83.3
Pp3c2_34110 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.6e-38 163.3 156 53.8
Pp3c2_34120 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.6e-38 163.3 156 53.8
arahy.Tifrunner.gnm1.ann1.151HRH Arachis hypogaea HOM05D006252 ORTHO05D007909 3.5e-38 162.2 103 81.6
Oeu007732.1 Olea europaea HOM05D006252 ORTHO05D007909 4.5e-38 161.8 94 90.4
SMO118G0111 Selaginella moellendorffii HOM05D006252 ORTHO05D007909 1.6e-35 153.3 159 49.7
arahy.Tifrunner.gnm1.ann1.RBN82M Arachis hypogaea HOM05D006252 ORTHO05D007909 1.0e-34 150.6 103 77.7
Thhalv10023194m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 3.0e-34 149.1 102 76.5
Actinidia24149 Actinidia chinensis HOM05D006252 ORTHO05D007909 1.4e-31 140.2 113 69.9
arahy.Tifrunner.gnm1.ann1.EI3IVH Arachis hypogaea HOM05D006252 ORTHO05D007909 5.0e-29 131.7 90 77.8
SEGI_37172 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 2.8e-27 125.9 86 72.1
arahy.Tifrunner.gnm1.ann1.8D185T Arachis hypogaea HOM05D006252 ORTHO05D005826 3.7e-24 115.5 71 83.1
Cre12.g556050 Chlamydomonas reinhardtii HOM05D006252 ORTHO05D007909 3.9e-21 105.5 148 40.5
MCO03G269 Micromonas commoda HOM05D006252 ORTHO05D007909 1.6e-19 100.1 155 35.5
arahy.Tifrunner.gnm1.ann1.KIT0HG Arachis hypogaea HOM05D006252 ORTHO05D007909 1.5e-17 93.6 88 60.2
Oeu007731.1 Olea europaea HOM05D006252 ORTHO05D007909 2.0e-17 93.2 58 84.5
Haze_24362 Corylus avellana HOM05D006252 ORTHO05D007909 2.2e-16 89.7 56 85.7
PRCOL_00001763 Prasinoderma coloniale HOM05D006252 ORTHO05D007909 3.7e-16 89.0 162 32.7
SEGI_26717 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 1.9e-15 86.7 72 59.7
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 6.2e-11 71.6 156 32.7
MELO3C029084.2 Cucumis melo HOM05D006252 ORTHO05D007909 8.0e-11 71.2 59 64.4
arahy.Tifrunner.gnm1.ann1.TR51Z4 Arachis hypogaea HOM05D006252 ORTHO05D007909 5.2e-10 68.6 44 70.5
arahy.Tifrunner.gnm1.ann1.LGS4T1 Arachis hypogaea HOM05D006252 ORTHO05D007909 4.1e-07 58.9 48 64.6
Zm00001eb258210 Zea mays HOM05D000274 ORTHO05D006772 1.2e-06 57.4 57 49.1


User provided reference genes

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