Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 7.3e-150 533.9 273 100.0
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 1.4e-105 386.7 273 73.3
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 3.2e-105 385.6 274 71.9
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 3.2e-105 385.6 272 73.5
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 7.2e-105 384.4 273 72.5
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 2.1e-104 382.9 273 72.2
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.6e-104 382.1 257 75.5
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 4.7e-104 381.7 272 72.8
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 6.1e-104 381.3 275 72.4
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 2.3e-103 379.4 281 70.1
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 1.5e-102 376.7 274 71.5
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 3.3e-102 375.6 270 70.7
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 5.7e-102 374.8 277 70.8
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.4e-100 370.2 274 69.7
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 1.8e-100 369.8 270 71.1
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 1.3e-98 363.6 274 69.3
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 6.5e-98 361.3 275 70.5
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.9e-97 359.8 244 73.0
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 2.5e-97 359.4 236 75.8
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 9.4e-97 357.5 273 68.1
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 3.6e-96 355.5 274 67.2
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 3.6e-96 355.5 272 66.2
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 4.7e-96 355.1 274 68.2
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 4.7e-96 355.1 273 67.0
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.0e-95 354.0 273 67.4
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-95 353.6 273 66.7
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 1.4e-95 353.6 274 67.9
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 2.3e-95 352.8 273 67.4
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 3.0e-95 352.4 272 66.2
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 4.0e-95 352.1 263 70.3
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 4.0e-95 352.1 238 73.9
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 5.2e-95 351.7 278 66.9
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 8.8e-95 350.9 274 67.5
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 9.7e-94 347.4 273 66.3
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 1.3e-93 347.1 265 69.4
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 1.3e-93 347.1 267 68.9
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 1.7e-93 346.7 279 65.9
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 2.8e-93 345.9 273 65.2
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 6.3e-93 344.7 266 69.5
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 4.1e-92 342.0 235 71.5
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 1.2e-91 340.5 278 65.1
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 1.6e-91 340.1 274 66.8
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 7.7e-91 337.8 231 71.9
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 2.2e-90 336.3 264 67.4
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 2.5e-89 332.8 231 70.6
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 4.2e-89 332.0 238 68.1
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 2.1e-88 329.7 271 64.9
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 6.1e-88 328.2 278 64.4
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 1.0e-87 327.4 271 65.3
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 1.0e-87 327.4 274 62.8
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 1.0e-87 327.4 274 63.5
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 2.3e-87 326.2 240 65.8
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 3.0e-87 325.9 272 62.9
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 1.5e-86 323.6 240 66.2
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 2.6e-86 322.8 240 65.4
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 3.4e-86 322.4 240 65.4
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 9.8e-86 320.9 240 65.0
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 1.7e-85 320.1 240 65.0
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 1.7e-85 320.1 234 67.1
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 2.8e-85 319.3 283 60.8
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 6.3e-85 318.2 240 65.4
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 6.3e-85 318.2 240 65.4
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 6.3e-85 318.2 238 65.5
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 1.1e-84 317.4 240 64.6
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 1.8e-84 316.6 274 62.8
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.8e-84 316.6 280 61.1
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 2.4e-84 316.2 240 64.6
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 4.1e-84 315.5 275 61.8
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 4.1e-84 315.5 281 60.1
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 7.0e-84 314.7 240 65.4
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 9.1e-84 314.3 256 60.5
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 1.2e-83 313.9 274 60.6
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-82 310.5 229 67.7
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.9e-82 309.3 278 60.8
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 6.6e-82 308.1 272 58.8
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.5e-81 307.0 278 60.4
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 2.5e-81 306.2 224 70.1
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 5.5e-81 305.1 271 57.9
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 5.5e-81 305.1 240 63.8
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 8.0e-80 301.2 273 59.3
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 1.8e-79 300.1 223 65.0
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 1.8e-79 300.1 206 73.8
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 2.3e-79 299.7 272 56.6
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 4.0e-79 298.9 223 70.9
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 7.5e-78 294.7 279 55.9
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 7.0e-76 288.1 191 75.4
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 2.0e-75 286.6 198 73.7
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 1.5e-73 280.4 265 54.7
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 1.5e-73 280.4 198 72.7
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 4.4e-70 268.9 218 63.3
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-69 266.5 186 69.4
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 2.4e-68 263.1 264 55.3
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 3.5e-67 259.2 247 55.5
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 3.5e-67 259.2 276 52.5
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-66 257.7 179 69.8
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 8.6e-66 254.6 209 61.2
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 8.6e-66 254.6 263 51.0
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 1.9e-65 253.4 240 55.0
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 3.3e-65 252.7 244 53.3
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.6e-59 233.8 259 50.6
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-57 227.3 234 55.6
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 2.5e-57 226.5 159 71.7
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.6e-57 225.3 231 56.7
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 3.0e-50 203.0 124 79.8
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 3.4e-46 189.5 181 56.4
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.8e-45 186.0 178 57.9
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 1.1e-44 184.5 122 72.1
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 2.1e-40 170.2 153 59.5
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 1.2e-38 164.5 217 40.6
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.8e-38 162.2 135 62.2
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.6e-38 161.8 253 43.1
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.2e-36 156.4 124 63.7
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.3e-34 150.2 115 65.2
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.5e-30 136.0 103 65.0
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 3.3e-25 119.8 86 66.3
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-24 117.9 136 50.7
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-24 117.5 70 80.0
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.1e-23 114.8 110 58.2
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-23 113.6 118 54.2
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.5e-21 105.5 99 58.6
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.5e-20 102.4 74 68.9
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-17 94.4 88 56.8
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 1.5e-17 94.4 109 52.3
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 1.9e-17 94.0 98 49.0
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 1.9e-17 94.0 81 53.1
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 1.4e-15 87.8 93 48.4
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.9e-15 85.5 88 55.7
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.8e-14 82.4 67 61.2
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-12 77.8 141 34.8
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 5.1e-10 69.3 138 34.1
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 6.7e-10 68.9 66 53.0
Gohir.A01G109901 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.7e-09 65.9 89 49.4
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.7e-08 63.2 38 76.3
ECA240G4443 Erigeron canadensis HOM05D000331 ORTHO05D006501 4.8e-08 62.8 124 38.7
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 4.8e-08 62.8 46 56.5
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 4.8e-08 62.8 46 56.5
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 1.4e-07 61.2 53 49.1
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 1.4e-07 61.2 53 49.1
Gohir.A08G135300 Gossypium hirsutum HOM05D003075 ORTHO05D003430 9.0e-07 58.5 121 33.9
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.0e-06 57.4 48 58.3


User provided reference genes

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