Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031279001 Vitis vinifera HOM05D004046 ORTHO05D004716 4.0e-44 181.0 90 100.0
GSVIVG01031275001 Vitis vinifera HOM05D004046 ORTHO05D004716 2.0e-35 152.1 80 92.5
GSVIVG01031283001 Vitis vinifera HOM05D004046 ORTHO05D004716 6.8e-20 100.5 51 94.1
TAR362G0840 Trochodendron aralioides HOM05D004046 ORTHO05D004716 3.9e-15 84.7 56 73.2
Actinidia16884 Actinidia chinensis HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
Actinidia27689 Actinidia chinensis HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
MSTRG.16415 Avicennia marina HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
Cc02_g35390 Coffea canephora HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
Dinv24482 Davidia involucrata HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
Nitab4.5_0003044g0050 Nicotiana tabacum HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
Nitab4.5_0011298g0030 Nicotiana tabacum HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
Oeu024971.3 Olea europaea HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
Rhsim11G0098900 Rhododendron simsii HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
RcHm_v2.0_Chr3g0457701 Rosa chinensis HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
SalBow7G4079 Salvia bowleyana HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
SGA_v2.0_scaffold4G01982 Striga asiatica HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
unitig_699.g19663 Utricularia gibba HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
vmacro01590 Vaccinium macrocarpon HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
GSVIVG01031287001 Vitis vinifera HOM05D004046 ORTHO05D004716 6.6e-15 84.0 45 86.7
PSO541G2302 Papaver somniferum HOM05D004046 ORTHO05D004716 8.7e-15 83.6 59 69.5
PSO675G4097 Papaver somniferum HOM05D004046 ORTHO05D004716 8.7e-15 83.6 59 69.5
PSO724G1081 Papaver somniferum HOM05D004046 ORTHO05D004716 8.7e-15 83.6 59 69.5
PSO729G0122 Papaver somniferum HOM05D004046 ORTHO05D004716 8.7e-15 83.6 59 69.5
CSS0015916 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 1.1e-14 83.2 45 86.7
CSS0016663 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 1.1e-14 83.2 59 69.5
CSS0022787 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 1.1e-14 83.2 59 69.5
CSS0043761 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 1.1e-14 83.2 59 69.5
Ah.15g096470 Amaranthus hybridus HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
CANSAT54G1174 Cannabis sativa HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
CiPaw.07G032200 Carya illinoinensis HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
CiPaw.07G032600 Carya illinoinensis HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
CiPaw.08G153400 Carya illinoinensis HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
ClCG02G014740 Citrullus lanatus HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
MELO3C004163.2 Cucumis melo HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
CsaV3_2G007260 Cucumis sativus L. HOM05D000028 ORTHO05D004716 1.5e-14 82.8 45 84.4
MD14G1013000 Malus domestica HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
Manes.08G080100 Manihot esculenta HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
Manes.09G093100 Manihot esculenta HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
Nitab4.5_0022238g0010 Nicotiana tabacum HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
Peaxi162Scf00357g00620 Petunia axillaris HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
QL02p093330 Quercus lobata HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
QL03p017764 Quercus lobata HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
Sabra09G0052700 Salix brachista HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
Sed0010909 Sechium edule HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
Hund21854 Selenicereus undatus HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
Sc09g0002540 Simmondsia chinensis HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
TWI53G0737 Tripterygium wilfordii HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
TWI74G0996 Tripterygium wilfordii HOM05D004046 ORTHO05D004716 1.5e-14 82.8 45 84.4
ATR0564G175 Amborella trichopoda HOM05D004046 ORTHO05D004716 1.9e-14 82.4 45 84.4
Aqoxy3G02119 Aquilegia oxysepala HOM05D004046 ORTHO05D004716 1.9e-14 82.4 45 84.4
MBI18_g27392_MAGBIO Magnolia biondii HOM05D004046 ORTHO05D004716 1.9e-14 82.4 45 84.4
Nn4g23875 Nelumbo nucifera HOM05D004046 ORTHO05D004716 1.9e-14 82.4 45 84.4
Nn6g34665 Nelumbo nucifera HOM05D004046 ORTHO05D004716 1.9e-14 82.4 45 84.4
CDE08G1157 Ceratophyllum demersum HOM05D004046 ORTHO05D004716 2.5e-14 82.0 45 84.4
arahy.Tifrunner.gnm1.ann1.9T0Q39 Arachis hypogaea HOM05D004046 ORTHO05D004716 3.3e-14 81.6 45 82.2
arahy.Tifrunner.gnm1.ann1.D04R4W Arachis hypogaea HOM05D004046 ORTHO05D004716 3.3e-14 81.6 45 82.2
MSTRG.19613 Avicennia marina HOM05D004046 ORTHO05D004716 3.3e-14 81.6 45 84.4
Cfa006729 Carpinus fangiana HOM05D004046 ORTHO05D004716 3.3e-14 81.6 45 82.2
AUR62000434 Chenopodium quinoa HOM05D004046 ORTHO05D004716 3.3e-14 81.6 45 82.2
AUR62006779 Chenopodium quinoa HOM05D004046 ORTHO05D004716 3.3e-14 81.6 45 82.2
Haze_04031 Corylus avellana HOM05D004046 ORTHO05D004716 3.3e-14 81.6 45 82.2
Migut.B00856 Erythranthe guttata HOM05D004046 ORTHO05D004716 3.3e-14 81.6 62 64.5
Glyma.11G160100 Glycine max HOM05D004046 ORTHO05D004716 3.3e-14 81.6 45 82.2
Glyma.18G053900 Glycine max HOM05D004046 ORTHO05D004716 3.3e-14 81.6 45 82.2
Lsat_1_v5_gn_4_12481 Lactuca sativa HOM05D004046 ORTHO05D004716 3.3e-14 81.6 45 84.4
Phvul.006G077300 Phaseolus vulgaris HOM05D004046 ORTHO05D004716 3.3e-14 81.6 45 82.2
Potri.009G069800 Populus trichocarpa HOM05D004046 ORTHO05D004716 3.3e-14 81.6 45 82.2
Prupe.6G309100 Prunus persica HOM05D004046 ORTHO05D004716 3.3e-14 81.6 45 82.2
VMungo0540G2486 Vigna mungo HOM05D004046 ORTHO05D004716 3.3e-14 81.6 45 82.2
Ciclev10012951m.g Citrus clementina HOM05D004046 ORTHO05D004716 4.3e-14 81.3 45 82.2
FvH4_6g08030 Fragaria vesca HOM05D004046 ORTHO05D004716 4.3e-14 81.3 45 82.2
FAN02G0090 Fragaria x ananassa HOM05D004046 ORTHO05D004716 4.3e-14 81.3 45 82.2
FAN05G0549 Fragaria x ananassa HOM05D004046 ORTHO05D004716 4.3e-14 81.3 45 82.2
FAN14G5596 Fragaria x ananassa HOM05D004046 ORTHO05D004716 4.3e-14 81.3 45 82.2
Aqoxy3G03929 Aquilegia oxysepala HOM05D004046 ORTHO05D004716 5.6e-14 80.9 45 82.2
COL.COLO4_14791 Corchorus olitorius HOM05D004046 ORTHO05D004716 5.6e-14 80.9 45 82.2
DCAR_003336 Daucus carota HOM05D004046 ORTHO05D004716 5.6e-14 80.9 45 82.2
Duzib106G1933 Durio zibethinus HOM05D004046 ORTHO05D004716 5.6e-14 80.9 45 82.2
Gohir.A11G326900 Gossypium hirsutum HOM05D004046 ORTHO05D004716 5.6e-14 80.9 45 82.2
Gohir.D09G151200 Gossypium hirsutum HOM05D004046 ORTHO05D004716 5.6e-14 80.9 45 82.2
Gorai.006G172500 Gossypium raimondii HOM05D004046 ORTHO05D004716 5.6e-14 80.9 45 82.2
Gorai.007G376100 Gossypium raimondii HOM05D004046 ORTHO05D004716 5.6e-14 80.9 45 82.2
THA.LOC104823263 Tarenaya hassleriana HOM05D004046 ORTHO05D004716 5.6e-14 80.9 45 82.2
THA.LOC104827016 Tarenaya hassleriana HOM05D004046 ORTHO05D004716 5.6e-14 80.9 45 82.2
Thecc.05G038900 Theobroma cacao HOM05D004046 ORTHO05D004716 5.6e-14 80.9 45 82.2
Zm00001eb376880 Zea mays HOM05D004046 ORTHO05D004716 5.6e-14 80.9 45 82.2
EL10Ac1g01013 Beta vulgaris HOM05D004046 ORTHO05D004716 7.3e-14 80.5 45 82.2
EL10Ac4g09510 Beta vulgaris HOM05D004046 ORTHO05D004716 7.3e-14 80.5 45 82.2
Dinv30922 Davidia involucrata HOM05D004046 ORTHO05D004716 7.3e-14 80.5 45 84.4
Glyma.09G274900 Glycine max HOM05D004046 ORTHO05D004716 7.3e-14 80.5 44 84.1
Hma1.2p1_0052F.1_g030600 Hydrangea macrophylla HOM05D004046 ORTHO05D004716 7.3e-14 80.5 45 84.4
Lj3g0003008 Lotus japonicus HOM05D004046 ORTHO05D004716 7.3e-14 80.5 45 80.0
Lalb_Chr18g0054271 Lupinus albus HOM05D004046 ORTHO05D004716 7.3e-14 80.5 45 80.0
MD12G1203200 Malus domestica HOM05D004046 ORTHO05D004716 7.3e-14 80.5 45 80.0
Medtr5g075330 Medicago truncatula HOM05D004046 ORTHO05D004716 7.3e-14 80.5 45 80.0
Psat2g051160 Pisum sativum HOM05D000114 ORTHO05D000075 7.3e-14 80.5 45 80.0
TPR.G18674 Trifolium pratense HOM05D004046 ORTHO05D004716 7.3e-14 80.5 45 80.0
TPR.G22016 Trifolium pratense HOM05D004046 ORTHO05D004716 7.3e-14 80.5 45 80.0
AagrBONN_evm.TU.Sc2ySwM_228.3974 Anthoceros agrestis HOM05D004046 ORTHO05D004716 9.6e-14 80.1 45 80.0
Medtr8g103680 Medicago truncatula HOM05D004046 ORTHO05D004716 9.6e-14 80.1 54 70.4
HanXRQChr01g0011571 Helianthus annuus HOM05D004046 ORTHO05D004716 1.2e-13 79.7 45 82.2
HanXRQChr05g0144301 Helianthus annuus HOM05D004046 ORTHO05D004716 1.2e-13 79.7 45 82.2
HanXRQChr14g0432401 Helianthus annuus HOM05D004046 ORTHO05D004716 1.2e-13 79.7 45 82.2
CAN.G1076.45 Capsicum annuum HOM05D004046 ORTHO05D004716 1.6e-13 79.3 45 82.2
Lj6g0018597 Lotus japonicus HOM05D004046 ORTHO05D004716 1.6e-13 79.3 45 77.8
Solyc01g100840.3 Solanum lycopersicum HOM05D004046 ORTHO05D004716 1.6e-13 79.3 45 82.2
Sopen01g044340 Solanum pennellii HOM05D004046 ORTHO05D004716 1.6e-13 79.3 45 82.2
PGSC0003DMG400002754 Solanum tuberosum HOM05D004046 ORTHO05D004716 1.6e-13 79.3 45 82.2
CSS0046633 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 2.1e-13 79.0 45 82.2
Cpa.g.sc188.2 Carica papaya HOM05D004046 ORTHO05D004716 2.1e-13 79.0 45 80.0
Ca_05705_v3 Cicer arietinum L. HOM05D004046 ORTHO05D004716 2.1e-13 79.0 44 79.5
Ca_30743_v3 Cicer arietinum L. HOM05D004046 ORTHO05D004716 2.1e-13 79.0 44 79.5
MBI19_g32693_MAGBIO Magnolia biondii HOM05D004046 ORTHO05D004716 2.1e-13 79.0 45 80.0
Os06g0151300 Oryza sativa ssp. japonica HOM05D004046 ORTHO05D004716 2.1e-13 79.0 45 80.0
Os07g0454700 Oryza sativa ssp. japonica HOM05D004046 ORTHO05D004716 2.1e-13 79.0 45 80.0
PGR083G0204 Punica granatum HOM05D004046 ORTHO05D004716 2.1e-13 79.0 44 81.8
DCAR_022169 Daucus carota HOM05D004046 ORTHO05D004716 2.8e-13 78.6 45 80.0
ECA236G0372 Erigeron canadensis HOM05D004046 ORTHO05D004716 2.8e-13 78.6 45 80.0
PGR031G1682 Punica granatum HOM05D004046 ORTHO05D004716 2.8e-13 78.6 45 77.8
SEGI_05351 Sequoiadendron giganteum HOM05D004046 ORTHO05D004716 2.8e-13 78.6 45 82.2
Duzib093G2058 Durio zibethinus HOM05D004046 ORTHO05D004716 4.7e-13 77.8 45 77.8
HanXRQChr12g0382401 Helianthus annuus HOM05D004046 ORTHO05D004716 4.7e-13 77.8 45 80.0
Aa31LG1G22470 Aethionema arabicum HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
AL6G11540 Arabidopsis lyrata HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
AT5G02280 Arabidopsis thaliana HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
BcaB01g06156 Brassica carinata HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
BcaB01g06221 Brassica carinata HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
A03p00610 Brassica napus HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
A10p33340 Brassica napus HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
C03p00880 Brassica napus HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
C09p74250 Brassica napus HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
BolC9t60158H Brassica oleracea HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
BraA10t45365Z Brassica rapa HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
Carub.0006s0112 Capsella rubella HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
CARHR211090 Cardamine hirsuta HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
Thhalv10022901m.g Eutrema salsugineum HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
Sp6g40170 Schrenkiella parvula HOM05D004046 ORTHO05D004716 1.4e-12 76.3 45 77.8
Mapoly0130s0031 Marchantia polymorpha HOM05D004046 ORTHO05D004716 1.8e-12 75.9 45 75.6
Pp3c15_20530 Physcomitrium patens HOM05D004046 ORTHO05D004716 1.8e-12 75.9 45 73.3
Pp3c9_17970 Physcomitrium patens HOM05D004046 ORTHO05D004716 1.8e-12 75.9 45 73.3
SMO270G0009 Selaginella moellendorffii HOM05D004046 ORTHO05D004716 1.8e-12 75.9 45 73.3
Cre02.g077500 Chlamydomonas reinhardtii HOM05D004046 ORTHO05D004716 2.2e-10 68.9 45 64.4
CBR_g30870 Chara braunii HOM05D004046 ORTHO05D004716 2.9e-10 68.6 46 56.5
Gohir.A09G155700 Gossypium hirsutum HOM05D004046 ORTHO05D004716 8.4e-10 67.0 45 73.3
Gorai.003G067000 Gossypium raimondii HOM05D004046 ORTHO05D004716 6.6e-07 57.4 33 78.8
PRCOL_00000225 Prasinoderma coloniale HOM05D004046 ORTHO05D004716 1.1e-06 56.6 76 38.2
Eucgr.H04106 Eucalyptus grandis HOM05D004046 ORTHO05D004716 1.9e-06 55.8 30 83.3


User provided reference genes

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