Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031258001 Vitis vinifera HOM05D000769 ORTHO05D439522 2.7e-122 442.2 257 100.0
Dinv34754 Davidia involucrata HOM05D000769 ORTHO05D000598 2.0e-11 73.9 46 76.1
COL.COLO4_09093 Corchorus olitorius HOM05D000769 ORTHO05D000598 4.4e-11 72.8 45 75.6
Lj2C1172T10 Lonicera japonica HOM05D000769 ORTHO05D000598 7.4e-11 72.0 46 69.6
QL12p021784 Quercus lobata HOM05D000769 ORTHO05D000598 1.3e-10 71.2 45 75.6
Haze_04708 Corylus avellana HOM05D000769 ORTHO05D000598 2.2e-10 70.5 45 73.3
Actinidia09133 Actinidia chinensis HOM05D000769 ORTHO05D000598 2.8e-10 70.1 46 73.9
CANSAT25G1716 Cannabis sativa HOM05D000769 ORTHO05D000598 2.8e-10 70.1 55 58.2
Thecc.01G279100 Theobroma cacao HOM05D000769 ORTHO05D000598 2.8e-10 70.1 44 72.7
CiPaw.07G091900 Carya illinoinensis HOM05D000769 ORTHO05D000598 4.8e-10 69.3 45 75.6
Duzib138G0490 Durio zibethinus HOM05D000769 ORTHO05D000598 4.8e-10 69.3 44 75.0
FAN15G2225 Fragaria x ananassa HOM05D000769 ORTHO05D000598 4.8e-10 69.3 40 77.5
FAN24G3090 Fragaria x ananassa HOM05D000769 ORTHO05D000598 4.8e-10 69.3 40 77.5
MD03G1264800 Malus domestica HOM05D000769 ORTHO05D000598 4.8e-10 69.3 42 73.8
Prupe.8G240800 Prunus persica HOM05D000769 ORTHO05D000598 4.8e-10 69.3 40 77.5
Actinidia00753 Actinidia chinensis HOM05D000769 ORTHO05D000598 6.3e-10 68.9 46 71.7
Ciclev10021982m.g Citrus clementina HOM05D000769 ORTHO05D000598 6.3e-10 68.9 48 68.8
Nitab4.5_0000458g0060 Nicotiana tabacum HOM05D000769 ORTHO05D000598 1.1e-09 68.2 46 71.7
Nitab4.5_0006749g0010 Nicotiana tabacum HOM05D000769 ORTHO05D000598 1.1e-09 68.2 46 71.7
RcHm_v2.0_Chr6g0291021 Rosa chinensis HOM05D000769 ORTHO05D000598 1.1e-09 68.2 40 75.0
FAN20G1828 Fragaria x ananassa HOM05D000769 ORTHO05D000598 1.4e-09 67.8 40 75.0
Sabra05G0159800 Salix brachista HOM05D000769 ORTHO05D000598 1.4e-09 67.8 45 73.3
FvH4_2g23550 Fragaria vesca HOM05D000769 ORTHO05D000598 1.8e-09 67.4 40 75.0
Hma1.2p1_0257F.1_g103390 Hydrangea macrophylla HOM05D000769 ORTHO05D000598 1.8e-09 67.4 44 72.7
PSO210G3720 Papaver somniferum HOM05D000769 ORTHO05D000598 1.8e-09 67.4 42 76.2
MD11G1285000 Malus domestica HOM05D000769 ORTHO05D000598 2.4e-09 67.0 40 77.5
FAN27G1140 Fragaria x ananassa HOM05D000769 ORTHO05D000598 3.1e-09 66.6 40 72.5
PGR119G0694 Punica granatum HOM05D000769 ORTHO05D000598 3.1e-09 66.6 47 70.2
TWI14G1123 Tripterygium wilfordii HOM05D000769 ORTHO05D000598 3.1e-09 66.6 45 68.9
Nn1g02232 Nelumbo nucifera HOM05D000769 ORTHO05D000598 4.1e-09 66.2 44 72.7
TAR633G1542 Trochodendron aralioides HOM05D000769 ORTHO05D000598 4.1e-09 66.2 44 75.0
Eucgr.H01477 Eucalyptus grandis HOM05D000769 ORTHO05D000598 5.3e-09 65.9 45 66.7
Manes.05G076700 Manihot esculenta HOM05D000769 ORTHO05D000598 5.3e-09 65.9 45 71.1
Peaxi162Scf00641g00815 Petunia axillaris HOM05D000769 ORTHO05D000598 5.3e-09 65.9 45 71.1
Atru.chr5.1439 Acer truncatum HOM05D000769 ORTHO05D000598 7.0e-09 65.5 40 75.0
Ah.15g091920 Amaranthus hybridus HOM05D000769 ORTHO05D000598 7.0e-09 65.5 65 52.3
Cpa.g.sc370.7 Carica papaya HOM05D000769 ORTHO05D000598 7.0e-09 65.5 45 68.9
ClCG09G007060 Citrullus lanatus HOM05D000769 ORTHO05D000598 7.0e-09 65.5 42 71.4
Potri.005G209800 Populus trichocarpa HOM05D000769 ORTHO05D000598 7.0e-09 65.5 45 71.1
Rhsim13G0025000 Rhododendron simsii HOM05D000769 ORTHO05D000598 7.0e-09 65.5 46 69.6
TPR.G9928 Trifolium pratense HOM05D000769 ORTHO05D000598 7.0e-09 65.5 52 63.5
TAR362G0134 Trochodendron aralioides HOM05D000769 ORTHO05D000598 7.0e-09 65.5 44 72.7
MSTRG.12564 Avicennia marina HOM05D000769 ORTHO05D000598 9.1e-09 65.1 45 66.7
MELO3C015833.2 Cucumis melo HOM05D000769 ORTHO05D000598 9.1e-09 65.1 42 71.4
CsaV3_7G028110 Cucumis sativus L. HOM05D000769 ORTHO05D000598 9.1e-09 65.1 42 71.4
Gohir.D08G075500 Gossypium hirsutum HOM05D000769 ORTHO05D000598 9.1e-09 65.1 44 70.5
Gorai.004G079800 Gossypium raimondii HOM05D000769 ORTHO05D000598 9.1e-09 65.1 44 70.5
Sed0001169 Sechium edule HOM05D000769 ORTHO05D000598 9.1e-09 65.1 42 71.4
Sed0002803 Sechium edule HOM05D000769 ORTHO05D000598 9.1e-09 65.1 42 71.4
vmacro02572 Vaccinium macrocarpon HOM05D000769 ORTHO05D000598 9.1e-09 65.1 46 67.4
Migut.D00298 Erythranthe guttata HOM05D000769 ORTHO05D000598 1.2e-08 64.7 44 68.2
Gohir.A08G066900 Gossypium hirsutum HOM05D000769 ORTHO05D000598 1.2e-08 64.7 44 70.5
Sabra02G0042900 Salix brachista HOM05D000769 ORTHO05D000598 1.2e-08 64.7 45 68.9
Aqoxy2G03337 Aquilegia oxysepala HOM05D000769 ORTHO05D000598 1.6e-08 64.3 50 62.0
PSO832G3034 Papaver somniferum HOM05D000769 ORTHO05D000598 1.6e-08 64.3 38 81.6
Potri.005G033600 Populus trichocarpa HOM05D000769 ORTHO05D000598 1.6e-08 64.3 60 56.7
CAN.G232.2 Capsicum annuum HOM05D000769 ORTHO05D000598 2.0e-08 63.9 48 66.7
Gohir.A11G122700 Gossypium hirsutum HOM05D000769 ORTHO05D000598 2.0e-08 63.9 40 72.5
Potri.002G052800 Populus trichocarpa HOM05D000769 ORTHO05D000598 2.0e-08 63.9 45 68.9
PGSC0003DMG400012887 Solanum tuberosum HOM05D000769 ORTHO05D000598 2.0e-08 63.9 45 68.9
Duzib211G0375 Durio zibethinus HOM05D000769 ORTHO05D000598 2.6e-08 63.5 40 72.5
Sc05g0004800 Simmondsia chinensis HOM05D000769 ORTHO05D000598 2.6e-08 63.5 40 72.5
CSS0035543 Camellia sinensis var. sinensis HOM05D000769 ORTHO05D000598 3.5e-08 63.2 40 75.0
Dinv40282 Davidia involucrata HOM05D000769 ORTHO05D000598 3.5e-08 63.2 40 75.0
Manes.08G121100 Manihot esculenta HOM05D000769 ORTHO05D000598 3.5e-08 63.2 40 72.5
Nn4g26253 Nelumbo nucifera HOM05D000769 ORTHO05D000598 3.5e-08 63.2 40 70.0
Phvul.001G151100 Phaseolus vulgaris HOM05D000769 ORTHO05D000598 3.5e-08 63.2 45 66.7
VMungo1383G2868 Vigna mungo HOM05D000769 ORTHO05D000598 3.5e-08 63.2 45 66.7
Atru.chr2.416 Acer truncatum HOM05D000769 ORTHO05D000598 4.5e-08 62.8 40 72.5
Atru.chr2.417 Acer truncatum HOM05D000769 ORTHO05D000598 4.5e-08 62.8 40 72.5
CSS0041021 Camellia sinensis var. sinensis HOM05D000769 ORTHO05D000598 4.5e-08 62.8 40 72.5
DCAR_002732 Daucus carota HOM05D000769 ORTHO05D000598 4.5e-08 62.8 40 70.0
Migut.N02057 Erythranthe guttata HOM05D000769 ORTHO05D000598 4.5e-08 62.8 45 62.2
Mapoly0199s0006 Marchantia polymorpha HOM05D000769 ORTHO05D000598 4.5e-08 62.8 44 68.2
SMO269G0010 Selaginella moellendorffii HOM05D000769 ORTHO05D000598 4.5e-08 62.8 40 75.0
Gohir.D11G128000 Gossypium hirsutum HOM05D000769 ORTHO05D000598 5.9e-08 62.4 40 70.0
Gorai.007G136900 Gossypium raimondii HOM05D000769 ORTHO05D000598 5.9e-08 62.4 40 70.0
Psat3g064240 Pisum sativum HOM05D000769 ORTHO05D000598 5.9e-08 62.4 52 59.6
AagrBONN_evm.TU.Sc2ySwM_344.2864 Anthoceros agrestis HOM05D000769 ORTHO05D000598 7.7e-08 62.0 58 55.2
Lalb_Chr01g0020151 Lupinus albus HOM05D000769 ORTHO05D000598 7.7e-08 62.0 45 64.4
Solyc09g065200.4 Solanum lycopersicum HOM05D000769 ORTHO05D000598 7.7e-08 62.0 45 66.7
Sopen09g026930 Solanum pennellii HOM05D000769 ORTHO05D000598 7.7e-08 62.0 45 66.7
HPP92_003159 Vanilla planifolia HOM05D000769 ORTHO05D000598 7.7e-08 62.0 64 43.8
MSTRG.21559 Avicennia marina HOM05D000769 ORTHO05D000598 1.0e-07 61.6 45 62.2
COL.COLO4_13478 Corchorus olitorius HOM05D000769 ORTHO05D000598 1.0e-07 61.6 40 72.5
Duzib177G0892 Durio zibethinus HOM05D000769 ORTHO05D000598 1.0e-07 61.6 50 60.0
HanXRQChr01g0003121 Helianthus annuus HOM05D000769 ORTHO05D000598 1.0e-07 61.6 40 70.0
Lsat_1_v5_gn_5_188201 Lactuca sativa HOM05D000769 ORTHO05D000598 1.0e-07 61.6 40 72.5
Glyma.19G156200 Glycine max HOM05D000769 ORTHO05D000598 1.3e-07 61.2 40 72.5
PGSC0003DMG400003451 Solanum tuberosum HOM05D000769 ORTHO05D000598 1.3e-07 61.2 56 53.6
PGSC0003DMG400031717 Solanum tuberosum HOM05D000769 ORTHO05D000598 1.3e-07 61.2 56 53.6
Ca_08583_v3 Cicer arietinum L. HOM05D000769 ORTHO05D000598 1.7e-07 60.8 45 64.4
ECA248G1114 Erigeron canadensis HOM05D000769 ORTHO05D000598 1.7e-07 60.8 40 70.0
Glyma.03G153800 Glycine max HOM05D000769 ORTHO05D000598 1.7e-07 60.8 40 70.0
Lj1g0010934 Lotus japonicus HOM05D000769 ORTHO05D000598 1.7e-07 60.8 40 70.0
Medtr7g094880 Medicago truncatula HOM05D000769 ORTHO05D000598 1.7e-07 60.8 40 70.0
Oeu022157.1 Olea europaea HOM05D000769 ORTHO05D000598 1.7e-07 60.8 42 66.7
PSO170G0293 Papaver somniferum HOM05D000769 ORTHO05D000598 1.7e-07 60.8 43 65.1
TWI59G0505 Tripterygium wilfordii HOM05D000769 ORTHO05D000598 1.7e-07 60.8 40 70.0
Aa31LG10G16960 Aethionema arabicum HOM05D000769 ORTHO05D000598 2.2e-07 60.5 40 70.0
arahy.Tifrunner.gnm1.ann1.DVHD2P Arachis hypogaea HOM05D000769 ORTHO05D000598 2.2e-07 60.5 40 70.0
arahy.Tifrunner.gnm1.ann1.JX4N9L Arachis hypogaea HOM05D000769 ORTHO05D000598 2.2e-07 60.5 40 70.0
CAN.G1034.4 Capsicum annuum HOM05D000769 ORTHO05D000598 2.2e-07 60.5 56 53.6
AUR62043697 Chenopodium quinoa HOM05D000769 ORTHO05D000598 2.2e-07 60.5 40 70.0
DCAR_029417 Daucus carota HOM05D000769 ORTHO05D000598 2.2e-07 60.5 40 70.0
SalBow6G2825 Salvia bowleyana HOM05D000769 ORTHO05D000598 2.2e-07 60.5 45 57.8
EL10Ac7g17238 Beta vulgaris HOM05D000769 ORTHO05D000598 2.9e-07 60.1 40 67.5
BcaC07g42708 Brassica carinata HOM05D000769 ORTHO05D000598 2.9e-07 60.1 44 63.6
MBI17_g09113_MAGBIO Magnolia biondii HOM05D000769 ORTHO05D000598 2.9e-07 60.1 44 65.9
CiPaw.07G017300 Carya illinoinensis HOM05D000769 ORTHO05D000598 3.8e-07 59.7 40 70.0
Nitab4.5_0000137g0330 Nicotiana tabacum HOM05D000769 ORTHO05D000598 3.8e-07 59.7 56 53.6
Nitab4.5_0006928g0020 Nicotiana tabacum HOM05D000769 ORTHO05D000598 3.8e-07 59.7 56 53.6
SMO343G0023 Selaginella moellendorffii HOM05D000769 ORTHO05D000598 3.8e-07 59.7 40 67.5
Thecc.05G304300 Theobroma cacao HOM05D000769 ORTHO05D000598 3.8e-07 59.7 50 58.0
MSTRG.18235 Avicennia marina HOM05D000769 ORTHO05D000598 6.5e-07 58.9 46 58.7
Os05g0398000 Oryza sativa ssp. japonica HOM05D000769 ORTHO05D000598 6.5e-07 58.9 40 67.5
Potri.013G023000 Populus trichocarpa HOM05D000769 ORTHO05D000598 6.5e-07 58.9 40 67.5
SGA_v2.0_scaffold138G35340 Striga asiatica HOM05D000769 ORTHO05D000598 6.5e-07 58.9 44 63.6
THA.LOC104823050 Tarenaya hassleriana HOM05D000769 ORTHO05D000598 6.5e-07 58.9 40 70.0
BcaC07g40792 Brassica carinata HOM05D000769 ORTHO05D000598 8.5e-07 58.5 45 60.0
A09p54940 Brassica napus HOM05D000769 ORTHO05D000598 8.5e-07 58.5 45 60.0
C08p37850 Brassica napus HOM05D000769 ORTHO05D000598 8.5e-07 58.5 45 60.0
BraA09t40903Z Brassica rapa HOM05D000769 ORTHO05D000598 8.5e-07 58.5 45 60.0
Sp5g00420 Schrenkiella parvula HOM05D000769 ORTHO05D000598 8.5e-07 58.5 44 61.4
Actinidia23631 Actinidia chinensis HOM05D000769 ORTHO05D000598 1.1e-06 58.2 38 68.4
Thhalv10006204m.g Eutrema salsugineum HOM05D000769 ORTHO05D000598 1.1e-06 58.2 44 61.4
PSO302G0280 Papaver somniferum HOM05D000769 ORTHO05D000598 1.1e-06 58.2 43 62.8
Pp3c24_6000 Physcomitrium patens HOM05D000769 ORTHO05D000598 1.1e-06 58.2 54 53.7
Sed0002188 Sechium edule HOM05D000769 ORTHO05D000598 1.1e-06 58.2 40 65.0
SEGI_06043 Sequoiadendron giganteum HOM05D000769 ORTHO05D000598 1.1e-06 58.2 44 63.6
SEGI_19109 Sequoiadendron giganteum HOM05D000769 ORTHO05D000598 1.1e-06 58.2 44 63.6
Cfa006582 Carpinus fangiana HOM05D000769 ORTHO05D000598 1.5e-06 57.8 40 70.0
CDE05G0852 Ceratophyllum demersum HOM05D000769 ORTHO05D000598 1.5e-06 57.8 40 67.5
Nitab4.5_0000563g0180 Nicotiana tabacum HOM05D000769 ORTHO05D000598 1.5e-06 57.8 64 48.4
Pp3c24_6020 Physcomitrium patens HOM05D000769 ORTHO05D000598 1.5e-06 57.8 40 70.0
SEGI_30030 Sequoiadendron giganteum HOM05D000769 ORTHO05D000598 1.5e-06 57.8 55 47.3
Solyc01g098930.3 Solanum lycopersicum HOM05D000769 ORTHO05D000598 1.5e-06 57.8 56 50.0
Sopen01g042470 Solanum pennellii HOM05D000769 ORTHO05D000598 1.5e-06 57.8 56 50.0
CARHR173430 Cardamine hirsuta HOM05D000769 ORTHO05D000598 1.9e-06 57.4 44 61.4
Lsat_1_v5_gn_2_127141 Lactuca sativa HOM05D000769 ORTHO05D000598 1.9e-06 57.4 46 56.5
Pp3c8_10460 Physcomitrium patens HOM05D000769 ORTHO05D000598 1.9e-06 57.4 52 55.8
Sabra13G0025000 Salix brachista HOM05D000769 ORTHO05D000598 1.9e-06 57.4 40 67.5
Hund21692 Selenicereus undatus HOM05D000769 ORTHO05D000598 1.9e-06 57.4 43 60.5
AL5G45960 Arabidopsis lyrata HOM05D000769 ORTHO05D000598 2.5e-06 57.0 44 59.1
Ciclev10002472m.g Citrus clementina HOM05D000769 ORTHO05D000598 2.5e-06 57.0 40 60.0
Pp3c8_11940 Physcomitrium patens HOM05D000769 ORTHO05D000598 2.5e-06 57.0 54 51.9
Rhsim03G0159300 Rhododendron simsii HOM05D000769 ORTHO05D000598 2.5e-06 57.0 49 53.1
Sed0007492 Sechium edule HOM05D000769 ORTHO05D000598 2.5e-06 57.0 40 62.5
Mapoly0100s0039 Marchantia polymorpha HOM05D000769 ORTHO05D000598 3.2e-06 56.6 43 62.8
SEGI_12522 Sequoiadendron giganteum HOM05D000769 ORTHO05D000598 3.2e-06 56.6 57 45.6
SEGI_24875 Sequoiadendron giganteum HOM05D000769 ORTHO05D000598 3.2e-06 56.6 44 61.4
BolC8t51363H Brassica oleracea HOM05D000769 ORTHO05D000598 4.2e-06 56.2 45 57.8
Cpa.g.sc48.44 Carica papaya HOM05D000769 ORTHO05D000598 4.2e-06 56.2 42 64.3
Haze_04201 Corylus avellana HOM05D000769 ORTHO05D000598 4.2e-06 56.2 40 67.5
ECA247G0892 Erigeron canadensis HOM05D000769 ORTHO05D000598 4.2e-06 56.2 43 55.8
ATR0626G111 Amborella trichopoda HOM05D000769 ORTHO05D000598 5.5e-06 55.8 40 62.5
Peaxi162Scf00037g00326 Petunia axillaris HOM05D000769 ORTHO05D000598 5.5e-06 55.8 40 62.5
QL03p006925 Quercus lobata HOM05D000769 ORTHO05D000598 5.5e-06 55.8 43 62.8
Zm00001eb287520 Zea mays HOM05D000769 ORTHO05D000598 5.5e-06 55.8 38 65.8
CSS0044509 Camellia sinensis var. sinensis HOM05D000769 ORTHO05D000598 7.2e-06 55.5 38 65.8
AT3G63120 Arabidopsis thaliana HOM05D000769 ORTHO05D000598 9.4e-06 55.1 44 56.8
Lsat_1_v5_gn_9_3660 Lactuca sativa HOM05D000769 ORTHO05D000598 9.4e-06 55.1 37 67.6
Sabra05G0035700 Salix brachista HOM05D000769 ORTHO05D000598 9.4e-06 55.1 48 54.2


User provided reference genes

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