Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 1.6e-221 772.3 363 100.0
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 4.8e-181 637.9 354 79.7
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 2.4e-180 635.6 364 78.6
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 3.1e-180 635.2 352 81.5
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 5.5e-177 624.4 346 82.1
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.4e-172 609.8 357 77.6
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 1.8e-172 609.4 360 73.9
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 4.2e-169 598.2 354 76.6
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 3.6e-168 595.1 361 73.1
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 4.7e-168 594.7 363 73.0
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 5.2e-167 591.3 359 73.5
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 6.7e-167 590.9 367 74.1
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 6.7e-167 590.9 356 72.5
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.0e-166 589.3 359 73.3
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 2.0e-166 589.3 359 73.3
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.2e-165 585.9 355 73.8
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.2e-165 585.9 355 73.8
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 2.8e-165 585.5 359 73.0
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 2.8e-165 585.5 342 76.3
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 4.8e-165 584.7 355 73.8
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 1.8e-164 582.8 361 71.7
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.8e-164 582.8 362 71.5
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 7.0e-164 580.9 352 73.3
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 9.1e-164 580.5 361 71.2
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.2e-163 580.1 358 72.9
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 2.0e-163 579.3 351 74.1
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 2.0e-163 579.3 358 72.3
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 5.9e-163 577.8 338 74.9
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 7.7e-163 577.4 355 72.4
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 2.2e-162 575.9 355 72.1
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 2.2e-162 575.9 356 73.6
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 5.0e-162 574.7 348 71.8
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 3.2e-161 572.0 356 72.8
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 4.2e-161 571.6 359 73.3
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 4.2e-161 571.6 353 72.5
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 7.2e-161 570.9 351 71.2
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.7e-160 568.9 351 70.9
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 8.0e-160 567.4 354 71.2
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.0e-159 567.0 341 74.5
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.0e-159 567.0 351 70.9
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 2.3e-159 565.8 355 71.5
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 2.3e-159 565.8 360 69.4
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.3e-158 562.0 352 72.4
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 9.7e-158 560.5 343 73.5
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 3.7e-157 558.5 358 70.9
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 6.3e-157 557.8 355 69.0
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 6.3e-157 557.8 339 73.7
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 8.2e-157 557.4 358 71.2
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 8.2e-157 557.4 358 70.7
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 3.1e-156 555.4 364 70.1
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 7.0e-156 554.3 360 70.6
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 4.5e-155 551.6 359 69.6
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 7.7e-155 550.8 364 68.1
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 1.0e-154 550.4 360 69.7
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 2.2e-154 549.3 343 71.1
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 3.8e-154 548.5 343 70.8
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 1.9e-153 546.2 360 68.1
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 1.9e-153 546.2 348 69.0
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 2.5e-153 545.8 345 71.6
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 3.2e-153 545.4 366 67.2
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 3.2e-153 545.4 360 67.8
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 3.2e-153 545.4 365 67.1
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 3.2e-153 545.4 343 69.7
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 9.4e-153 543.9 327 75.2
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-152 543.5 318 76.7
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 1.2e-152 543.5 364 66.8
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 1.6e-152 543.1 365 67.9
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 2.7e-152 542.3 327 75.2
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 3.6e-152 542.0 304 77.0
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 4.7e-152 541.6 357 69.5
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 6.1e-152 541.2 356 70.2
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 8.0e-152 540.8 344 70.9
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.0e-151 540.4 358 69.3
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.0e-151 540.4 318 76.1
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.4e-151 540.0 359 68.0
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.8e-151 539.7 391 66.2
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 2.3e-151 539.3 448 57.6
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 8.8e-151 537.3 357 69.2
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 1.5e-150 536.6 366 65.6
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 5.7e-150 534.6 355 68.2
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 7.5e-150 534.3 363 66.1
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 9.8e-150 533.9 310 77.4
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 1.3e-149 533.5 359 67.4
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.3e-149 533.5 360 66.7
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 2.8e-149 532.3 359 66.9
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 4.8e-149 531.6 359 65.7
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 6.3e-149 531.2 358 66.5
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 1.1e-148 530.4 358 66.5
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 1.1e-148 530.4 358 66.5
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.8e-148 529.6 358 66.8
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 2.4e-148 529.3 344 70.9
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 5.4e-148 528.1 353 68.3
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.6e-147 526.6 450 56.4
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 4.5e-147 525.0 356 67.1
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 1.7e-146 523.1 342 67.0
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 2.5e-145 519.2 359 66.6
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 4.7e-144 515.0 354 68.1
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 2.3e-143 512.7 344 66.3
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 2.6e-142 509.2 364 62.4
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 3.4e-142 508.8 342 67.0
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 2.2e-141 506.1 364 65.7
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.8e-141 505.8 364 65.7
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 6.1e-136 488.0 327 67.6
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 5.2e-135 485.0 345 66.4
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 5.8e-134 481.5 371 63.3
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 1.7e-133 479.9 314 70.4
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 4.9e-133 478.4 357 61.3
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 4.6e-131 471.9 353 63.2
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 3.3e-129 465.7 275 76.7
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 7.3e-129 464.5 275 76.4
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.6e-128 463.4 361 59.8
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 6.2e-128 461.5 275 76.0
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.2e-120 437.2 315 68.9
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 1.1e-119 434.1 248 76.2
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 1.3e-117 427.2 267 70.8
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 9.2e-116 421.0 333 59.8
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 8.1e-112 407.9 284 63.4
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 4.6e-107 392.1 331 55.6
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.3e-105 385.6 230 73.9
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.4e-102 375.9 223 73.5
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 7.1e-100 368.2 245 67.8
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 1.3e-96 357.5 363 47.1
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.4e-95 354.0 330 55.5
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.9e-93 346.3 201 73.6
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 2.7e-91 339.7 236 64.4
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 3.3e-89 332.8 357 46.2
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 7.4e-89 331.6 212 66.5
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.3e-88 330.9 257 60.7
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.8e-87 327.0 329 48.6
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 9.9e-86 321.2 340 46.2
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 2.5e-81 306.6 175 76.6
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 1.8e-79 300.4 194 70.6
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 6.9e-79 298.5 348 44.3
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.2e-77 293.5 200 65.0
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.9e-77 293.1 210 63.8
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 4.5e-62 242.7 239 49.8
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.9e-60 237.3 155 70.3
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 1.5e-57 227.6 160 64.4
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 1.5e-54 217.6 280 44.6
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 1.3e-40 171.4 228 43.9
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 2.2e-32 144.1 99 67.7
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 4.8e-32 142.9 103 61.2
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 5.4e-31 139.4 89 64.0
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 1.2e-30 138.3 98 64.3
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 4.1e-23 113.2 102 49.0
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.9e-15 87.8 142 30.3
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 4.7e-11 73.2 102 44.1


User provided reference genes

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