Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031191001 Vitis vinifera HOM05D001700 ORTHO05D439057 7.8e-22 106.3 56 100.0
Dinv21949 Davidia involucrata HOM05D001700 ORTHO05D002131 1.4e-10 68.9 43 81.4
Dinv16319 Davidia involucrata HOM05D001700 ORTHO05D002131 1.8e-10 68.6 42 85.7
TAR381G0364 Trochodendron aralioides HOM05D001700 ORTHO05D002131 3.1e-10 67.8 42 81.0
TAR381G0454 Trochodendron aralioides HOM05D001700 ORTHO05D002131 3.1e-10 67.8 42 81.0
TAR625G0058 Trochodendron aralioides HOM05D001700 ORTHO05D002131 4.0e-10 67.4 42 81.0
TWI74G0962 Tripterygium wilfordii HOM05D001700 ORTHO05D002131 1.2e-09 65.9 46 71.7
ATR0564G414 Amborella trichopoda HOM05D001700 ORTHO05D002131 1.5e-09 65.5 42 81.0
Peaxi162Scf00204g00079 Petunia axillaris HOM05D001700 ORTHO05D002131 1.5e-09 65.5 48 72.9
Nitab4.5_0000518g0030 Nicotiana tabacum HOM05D001700 ORTHO05D002131 2.0e-09 65.1 48 70.8
PGR004G1902 Punica granatum HOM05D001700 ORTHO05D002131 2.6e-09 64.7 48 72.9
CAN.G727.2 Capsicum annuum HOM05D001700 ORTHO05D002131 4.4e-09 63.9 48 70.8
Migut.L00097 Erythranthe guttata HOM05D001700 ORTHO05D002131 4.4e-09 63.9 48 66.7
Gohir.D12G094700 Gossypium hirsutum HOM05D001700 ORTHO05D002131 4.4e-09 63.9 47 70.2
Gorai.008G103300 Gossypium raimondii HOM05D001700 ORTHO05D002131 4.4e-09 63.9 47 70.2
MBI05_g00774_MAGBIO Magnolia biondii HOM05D001700 ORTHO05D002131 4.4e-09 63.9 48 72.9
Lj4C880G9 Lonicera japonica HOM05D001700 ORTHO05D002131 5.8e-09 63.5 42 78.6
COL.COLO4_11049 Corchorus olitorius HOM05D001700 ORTHO05D002131 7.5e-09 63.2 46 71.7
Duzib147G0932 Durio zibethinus HOM05D001700 ORTHO05D002131 7.5e-09 63.2 46 71.7
MBI02_g19398_MAGBIO Magnolia biondii HOM05D001700 ORTHO05D002131 7.5e-09 63.2 48 68.8
Potri.005G080100 Populus trichocarpa HOM05D001700 ORTHO05D002131 7.5e-09 63.2 45 73.3
Sabra07G0072100 Salix brachista HOM05D001700 ORTHO05D002131 7.5e-09 63.2 45 73.3
Sed0010090 Sechium edule HOM05D001700 ORTHO05D002131 7.5e-09 63.2 42 76.2
Gohir.A12G091200 Gossypium hirsutum HOM05D001700 ORTHO05D002131 9.8e-09 62.8 47 70.2
Manes.12G138800 Manihot esculenta HOM05D001700 ORTHO05D002131 9.8e-09 62.8 42 76.2
Ciclev10024684m.g Citrus clementina HOM05D001700 ORTHO05D002131 1.3e-08 62.4 46 69.6
Nn5g28999 Nelumbo nucifera HOM05D001700 ORTHO05D002131 1.3e-08 62.4 42 73.8
TWI77G0447 Tripterygium wilfordii HOM05D001700 ORTHO05D002131 1.3e-08 62.4 46 67.4
Atru.chr4.258 Acer truncatum HOM05D001700 ORTHO05D002131 1.7e-08 62.0 46 67.4
Aqoxy6G00541 Aquilegia oxysepala HOM05D001700 ORTHO05D002131 1.7e-08 62.0 42 73.8
ClCG01G019020 Citrullus lanatus HOM05D001700 ORTHO05D002131 1.7e-08 62.0 42 73.8
Lj6g0012862 Lotus japonicus HOM05D001700 ORTHO05D002131 1.7e-08 62.0 42 73.8
Potri.007G087200 Populus trichocarpa HOM05D001700 ORTHO05D002131 1.7e-08 62.0 45 71.1
Sabra05G0065700 Salix brachista HOM05D001700 ORTHO05D002131 1.7e-08 62.0 45 73.3
Thecc.01G107700 Theobroma cacao HOM05D001700 ORTHO05D002131 1.7e-08 62.0 46 69.6
EL10Ac6g15064 Beta vulgaris HOM05D001700 ORTHO05D002131 2.2e-08 61.6 45 68.9
HanXRQChr15g0485431 Helianthus annuus HOM05D001700 ORTHO05D002131 2.2e-08 61.6 42 73.8
vmacro12935 Vaccinium macrocarpon HOM05D001700 ORTHO05D002131 2.2e-08 61.6 48 68.8
Duzib264G0503 Durio zibethinus HOM05D001700 ORTHO05D002131 2.9e-08 61.2 46 69.6
SGA_v2.0_scaffold2G01318 Striga asiatica HOM05D001700 ORTHO05D002131 2.9e-08 61.2 48 66.7
GSVIVG01022187001 Vitis vinifera HOM05D001700 ORTHO05D002131 2.9e-08 61.2 38 84.2
Cfa002721 Carpinus fangiana HOM05D001700 ORTHO05D002131 3.7e-08 60.8 42 73.8
CiPaw.04G095300 Carya illinoinensis HOM05D001700 ORTHO05D002131 3.7e-08 60.8 42 73.8
Haze_24996 Corylus avellana HOM05D001700 ORTHO05D002131 3.7e-08 60.8 42 73.8
MELO3C007781.2 Cucumis melo HOM05D001700 ORTHO05D002131 3.7e-08 60.8 42 71.4
CsaV3_6G045710 Cucumis sativus L. HOM05D001700 ORTHO05D002131 3.7e-08 60.8 42 71.4
Medtr3g087800 Medicago truncatula HOM05D001700 ORTHO05D002131 3.7e-08 60.8 45 66.7
Cc07_g15660 Coffea canephora HOM05D001700 ORTHO05D002131 4.9e-08 60.5 42 73.8
QL06p050515 Quercus lobata HOM05D001700 ORTHO05D002131 4.9e-08 60.5 42 73.8
CSS0038089 Camellia sinensis var. sinensis HOM05D001700 ORTHO05D002131 6.4e-08 60.1 42 71.4
Eucgr.I00378 Eucalyptus grandis HOM05D001700 ORTHO05D002131 6.4e-08 60.1 43 72.1
ECA232G3402 Erigeron canadensis HOM05D001700 ORTHO05D002131 8.3e-08 59.7 42 69.0
MD01G1024000 Malus domestica HOM05D001700 ORTHO05D002131 8.3e-08 59.7 40 77.5
Psat3g175160 Pisum sativum HOM05D001700 ORTHO05D002131 8.3e-08 59.7 45 66.7
Prupe.6G179000 Prunus persica HOM05D001700 ORTHO05D002131 8.3e-08 59.7 40 77.5
AUR62002040 Chenopodium quinoa HOM05D001700 ORTHO05D002131 1.1e-07 59.3 42 69.0
Ca_16548_v3 Cicer arietinum L. HOM05D001700 ORTHO05D002131 1.1e-07 59.3 45 64.4
Gohir.A11G199000 Gossypium hirsutum HOM05D001700 ORTHO05D002131 1.1e-07 59.3 46 67.4
HanXRQChr14g0445551 Helianthus annuus HOM05D001700 ORTHO05D002131 1.1e-07 59.3 48 64.6
Manes.13G090600 Manihot esculenta HOM05D001700 ORTHO05D002131 1.1e-07 59.3 45 64.4
Oeu028395.1 Olea europaea HOM05D001700 ORTHO05D002131 1.1e-07 59.3 48 68.8
Sed0006866 Sechium edule HOM05D001700 ORTHO05D002131 1.1e-07 59.3 42 69.0
Sopen04g024300 Solanum pennellii HOM05D001700 ORTHO05D002131 1.1e-07 59.3 46 67.4
Gohir.D11G225100 Gossypium hirsutum HOM05D001700 ORTHO05D002131 1.4e-07 58.9 46 67.4
Gorai.007G242400 Gossypium raimondii HOM05D001700 ORTHO05D002131 1.4e-07 58.9 46 67.4
Lalb_Chr08g0231221 Lupinus albus HOM05D001700 ORTHO05D002131 1.4e-07 58.9 42 71.4
MD15G1329300 Malus domestica HOM05D001700 ORTHO05D002131 1.4e-07 58.9 40 75.0
Oeu045781.2 Olea europaea HOM05D001700 ORTHO05D002131 1.4e-07 58.9 42 71.4
PSO447G0334 Papaver somniferum HOM05D001700 ORTHO05D002131 1.4e-07 58.9 42 71.4
TPR.G22888 Trifolium pratense HOM05D001700 ORTHO05D002131 1.4e-07 58.9 45 66.7
unitig_736.g22570 Utricularia gibba HOM05D001700 ORTHO05D002131 1.4e-07 58.9 42 73.8
unitig_899.g14545 Utricularia gibba HOM05D001700 ORTHO05D002131 1.4e-07 58.9 42 73.8
Ah.02g122780 Amaranthus hybridus HOM05D001700 ORTHO05D002131 1.9e-07 58.5 42 69.0
CSS0035982 Camellia sinensis var. sinensis HOM05D001700 ORTHO05D002131 1.9e-07 58.5 42 71.4
CiPaw.03G138200 Carya illinoinensis HOM05D001700 ORTHO05D002131 1.9e-07 58.5 42 71.4
AUR62003757 Chenopodium quinoa HOM05D001700 ORTHO05D002131 1.9e-07 58.5 42 66.7
DCAR_011497 Daucus carota HOM05D001700 ORTHO05D002131 1.9e-07 58.5 48 60.4
Glyma.11G237800 Glycine max HOM05D001700 ORTHO05D002131 1.9e-07 58.5 42 71.4
Glyma.18G019600 Glycine max HOM05D001700 ORTHO05D002131 1.9e-07 58.5 42 71.4
Phvul.001G250100 Phaseolus vulgaris HOM05D001700 ORTHO05D002131 1.9e-07 58.5 42 66.7
Zm00001eb279480 Zea mays HOM05D001700 ORTHO05D002131 1.9e-07 58.5 42 66.7
Zm00001eb372570 Zea mays HOM05D001700 ORTHO05D002131 1.9e-07 58.5 42 66.7
FvH4_1g21660 Fragaria vesca HOM05D001700 ORTHO05D002131 2.4e-07 58.2 40 75.0
FAN19G0237 Fragaria x ananassa HOM05D001700 ORTHO05D002131 2.4e-07 58.2 40 75.0
FAN23G1158 Fragaria x ananassa HOM05D001700 ORTHO05D002131 2.4e-07 58.2 40 75.0
FAN26G2523 Fragaria x ananassa HOM05D001700 ORTHO05D002131 2.4e-07 58.2 40 75.0
FAN28G2305 Fragaria x ananassa HOM05D001700 ORTHO05D002131 2.4e-07 58.2 40 75.0
Lsat_1_v5_gn_4_139981 Lactuca sativa HOM05D001700 ORTHO05D002131 2.4e-07 58.2 42 69.0
RcHm_v2.0_Chr2g0115531 Rosa chinensis HOM05D001700 ORTHO05D002131 2.4e-07 58.2 40 75.0
Actinidia36609 Actinidia chinensis HOM05D001700 ORTHO05D002131 3.2e-07 57.8 42 69.0
BcaB06g27805 Brassica carinata HOM05D001700 ORTHO05D002131 3.2e-07 57.8 46 63.0
BcaC07g41094 Brassica carinata HOM05D001700 ORTHO05D002131 3.2e-07 57.8 46 63.0
A09p57750 Brassica napus HOM05D001700 ORTHO05D002131 3.2e-07 57.8 46 63.0
C08p40970 Brassica napus HOM05D001700 ORTHO05D002131 3.2e-07 57.8 46 63.0
BolC8t51660H Brassica oleracea HOM05D001700 ORTHO05D002131 3.2e-07 57.8 46 63.0
BraA09t41167Z Brassica rapa HOM05D001700 ORTHO05D002131 3.2e-07 57.8 46 63.0
Carub.0004s0127 Capsella rubella HOM05D001700 ORTHO05D002131 3.2e-07 57.8 46 60.9
Lalb_Chr12g0203651 Lupinus albus HOM05D001700 ORTHO05D002131 3.2e-07 57.8 48 62.5
Psat5g088440 Pisum sativum HOM05D001700 ORTHO05D002131 3.2e-07 57.8 45 64.4
BcaC02g08736 Brassica carinata HOM05D001700 ORTHO05D002131 4.1e-07 57.4 46 60.9
A04p16640 Brassica napus HOM05D001700 ORTHO05D002131 4.1e-07 57.4 46 60.9
C04p51190 Brassica napus HOM05D001700 ORTHO05D002131 4.1e-07 57.4 46 60.9
BolC4t26708H Brassica oleracea HOM05D001700 ORTHO05D002131 4.1e-07 57.4 46 60.9
BraA04t17298Z Brassica rapa HOM05D001700 ORTHO05D002131 4.1e-07 57.4 46 60.9
ECA238G1388 Erigeron canadensis HOM05D001700 ORTHO05D002131 4.1e-07 57.4 48 64.6
Thhalv10000007m.g Eutrema salsugineum HOM05D001700 ORTHO05D002131 4.1e-07 57.4 46 63.0
Lj4g0022101 Lotus japonicus HOM05D001700 ORTHO05D002131 4.1e-07 57.4 48 62.5
Nn1g05256 Nelumbo nucifera HOM05D001700 ORTHO05D002131 4.1e-07 57.4 42 69.0
SalBow3G0222 Salvia bowleyana HOM05D001700 ORTHO05D002131 4.1e-07 57.4 48 62.5
Sp4g01210 Schrenkiella parvula HOM05D001700 ORTHO05D002131 4.1e-07 57.4 46 63.0
Aa31LG6G15570 Aethionema arabicum HOM05D001700 ORTHO05D002131 5.4e-07 57.0 46 63.0
SalBow5G4059 Salvia bowleyana HOM05D001700 ORTHO05D002131 5.4e-07 57.0 45 64.4
arahy.Tifrunner.gnm1.ann1.1QLE3S Arachis hypogaea HOM05D001700 ORTHO05D002131 7.0e-07 56.6 48 62.5
arahy.Tifrunner.gnm1.ann1.E7E9RS Arachis hypogaea HOM05D001700 ORTHO05D002131 7.0e-07 56.6 48 62.5
MSTRG.2548 Avicennia marina HOM05D001700 ORTHO05D002131 7.0e-07 56.6 48 58.3
Lsat_1_v5_gn_2_67780 Lactuca sativa HOM05D001700 ORTHO05D002131 7.0e-07 56.6 42 69.0
AL4G11470 Arabidopsis lyrata HOM05D001700 ORTHO05D002131 9.2e-07 56.2 46 60.9
CANSAT01G2642 Cannabis sativa HOM05D001700 ORTHO05D002131 9.2e-07 56.2 42 66.7
CARHR113260 Cardamine hirsuta HOM05D001700 ORTHO05D002131 9.2e-07 56.2 46 60.9
Glyma.05G181600 Glycine max HOM05D001700 ORTHO05D002131 9.2e-07 56.2 48 62.5
SalBow5G5615 Salvia bowleyana HOM05D001700 ORTHO05D002131 9.2e-07 56.2 45 64.4
CDE10G0584 Ceratophyllum demersum HOM05D001700 ORTHO05D002131 1.2e-06 55.8 48 58.3
Phvul.002G262600 Phaseolus vulgaris HOM05D001700 ORTHO05D002131 1.2e-06 55.8 48 62.5
Aa31LG7G14580 Aethionema arabicum HOM05D001700 ORTHO05D002131 1.6e-06 55.5 46 60.9
AT2G22125 Arabidopsis thaliana HOM05D001700 ORTHO05D002131 1.6e-06 55.5 46 60.9
ECA232G1964 Erigeron canadensis HOM05D001700 ORTHO05D002131 1.6e-06 55.5 52 53.8
HanXRQChr09g0254661 Helianthus annuus HOM05D001700 ORTHO05D002131 1.6e-06 55.5 42 64.3
Cpa.g.sc231.9 Carica papaya HOM05D001700 ORTHO05D002131 2.1e-06 55.1 46 60.9
Hund13646 Selenicereus undatus HOM05D001700 ORTHO05D002131 2.1e-06 55.1 42 61.9
Hund16265 Selenicereus undatus HOM05D001700 ORTHO05D002131 2.1e-06 55.1 42 66.7
Glyma.08G139300 Glycine max HOM05D001700 ORTHO05D002131 2.7e-06 54.7 48 60.4
arahy.Tifrunner.gnm1.ann1.01D2LU Arachis hypogaea HOM05D001700 ORTHO05D002131 3.5e-06 54.3 45 62.2
arahy.Tifrunner.gnm1.ann1.URDF0Y Arachis hypogaea HOM05D001700 ORTHO05D002131 3.5e-06 54.3 45 62.2
Ca_17710_v3 Cicer arietinum L. HOM05D001700 ORTHO05D002131 3.5e-06 54.3 48 60.4
Psat3g174280 Pisum sativum HOM05D001700 ORTHO05D005769 3.5e-06 54.3 45 62.2
HPP92_013081 Vanilla planifolia HOM05D001700 ORTHO05D002131 3.5e-06 54.3 42 61.9
CDE10G0848 Ceratophyllum demersum HOM05D001700 ORTHO05D002131 4.6e-06 53.9 48 56.2
Medtr8g091470 Medicago truncatula HOM05D001700 ORTHO05D002131 7.8e-06 53.1 52 55.8


User provided reference genes

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