Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031104001 Vitis vinifera HOM05D005568 ORTHO05D006940 1.6e-42 175.6 87 100.0
GSVIVG01012218001 Vitis vinifera HOM05D005568 ORTHO05D006940 8.1e-26 120.2 105 64.8
CiPaw.05G125400 Carya illinoinensis HOM05D005568 ORTHO05D006940 3.0e-20 101.7 105 53.3
Lj6A779T68 Lonicera japonica HOM05D005568 ORTHO05D006940 5.1e-20 100.9 105 52.4
QL12p030796 Quercus lobata HOM05D005568 ORTHO05D006940 5.1e-20 100.9 105 54.3
Hma1.2p1_0566F.1_g179750 Hydrangea macrophylla HOM05D005568 ORTHO05D006940 1.1e-19 99.8 105 53.3
Haze_11911 Corylus avellana HOM05D005568 ORTHO05D006940 5.6e-19 97.4 105 50.5
Rhsim09G0127600 Rhododendron simsii HOM05D005568 ORTHO05D006940 9.5e-19 96.7 105 51.4
TAR622G0890 Trochodendron aralioides HOM05D005568 ORTHO05D006940 2.1e-18 95.5 105 53.3
CSS0039095 Camellia sinensis var. sinensis HOM05D005568 ORTHO05D006940 2.8e-18 95.1 105 52.4
Prupe.1G286700 Prunus persica HOM05D005568 ORTHO05D006940 3.6e-18 94.7 105 49.5
RcHm_v2.0_Chr4g0438391 Rosa chinensis HOM05D005568 ORTHO05D006940 8.1e-18 93.6 105 50.5
MD16G1061400 Malus domestica HOM05D005568 ORTHO05D006940 1.1e-17 93.2 105 50.5
Potri.008G095700 Populus trichocarpa HOM05D005568 ORTHO05D006940 1.4e-17 92.8 105 51.4
Solyc05g012290.3 Solanum lycopersicum HOM05D005568 ORTHO05D006940 1.4e-17 92.8 105 51.4
Sopen05g007120 Solanum pennellii HOM05D005568 ORTHO05D006940 1.4e-17 92.8 105 51.4
Duzib248G1642 Durio zibethinus HOM05D005568 ORTHO05D006940 2.4e-17 92.0 105 51.4
Actinidia16167 Actinidia chinensis HOM05D005568 ORTHO05D006940 8.9e-17 90.1 105 51.4
FAN22G1579 Fragaria x ananassa HOM05D005568 ORTHO05D006940 8.9e-17 90.1 105 48.6
Manes.01G027700 Manihot esculenta HOM05D005568 ORTHO05D006940 1.2e-16 89.7 104 50.0
FAN07G0232 Fragaria x ananassa HOM05D005568 ORTHO05D006940 1.5e-16 89.4 105 48.6
FAN17G2544 Fragaria x ananassa HOM05D005568 ORTHO05D006940 1.5e-16 89.4 105 48.6
GSVIVG01031111001 Vitis vinifera HOM05D005568 ORTHO05D006940 2.6e-16 88.6 68 70.6
ECA233G1797 Erigeron canadensis HOM05D005568 ORTHO05D006940 3.4e-16 88.2 106 50.0
DCAR_030041 Daucus carota HOM05D005568 ORTHO05D006940 4.4e-16 87.8 105 46.7
Sabra08G0072100 Salix brachista HOM05D005568 ORTHO05D006940 4.4e-16 87.8 104 49.0
TWI31G1152 Tripterygium wilfordii HOM05D005568 ORTHO05D006940 5.8e-16 87.4 105 47.6
FvH4_4g30090 Fragaria vesca HOM05D005568 ORTHO05D006940 7.6e-16 87.0 105 47.6
FAN12G3709 Fragaria x ananassa HOM05D005568 ORTHO05D006940 7.6e-16 87.0 105 47.6
CANSAT64G0560 Cannabis sativa HOM05D005568 ORTHO05D006940 9.9e-16 86.7 105 45.7
PGSC0003DMG400028318 Solanum tuberosum HOM05D005568 ORTHO05D006940 9.9e-16 86.7 106 50.0
Thecc.02G330600 Theobroma cacao HOM05D005568 ORTHO05D006940 9.9e-16 86.7 105 50.5
vmacro10423 Vaccinium macrocarpon HOM05D005568 ORTHO05D006940 9.9e-16 86.7 105 48.6
HanXRQChr08g0211781 Helianthus annuus HOM05D005568 ORTHO05D006940 1.7e-15 85.9 106 48.1
Atru.chr11.1627 Acer truncatum HOM05D005568 ORTHO05D006940 4.9e-15 84.3 105 43.8
CAN.G616.43 Capsicum annuum HOM05D005568 ORTHO05D006940 4.9e-15 84.3 104 49.0
Peaxi162Scf00175g00125 Petunia axillaris HOM05D005568 ORTHO05D006940 4.9e-15 84.3 105 47.6
EL10Ac5g12478 Beta vulgaris HOM05D005568 ORTHO05D006940 8.4e-15 83.6 104 45.2
Cpa.g.sc1.123 Carica papaya HOM05D005568 ORTHO05D006940 1.4e-14 82.8 105 46.7
Oeu004582.1 Olea europaea HOM05D005568 ORTHO05D006940 1.4e-14 82.8 104 46.2
Aqoxy3G03640 Aquilegia oxysepala HOM05D005568 ORTHO05D006940 1.9e-14 82.4 105 41.9
SalBow2G0760 Salvia bowleyana HOM05D005568 ORTHO05D006940 1.9e-14 82.4 105 42.9
Nitab4.5_0000231g0340 Nicotiana tabacum HOM05D005568 ORTHO05D006940 3.2e-14 81.6 105 47.6
Migut.L01192 Erythranthe guttata HOM05D005568 ORTHO05D006940 4.2e-14 81.3 104 42.3
Gohir.D12G164600 Gossypium hirsutum HOM05D005568 ORTHO05D006940 4.2e-14 81.3 105 45.7
Gorai.008G177200 Gossypium raimondii HOM05D005568 ORTHO05D006940 4.2e-14 81.3 105 45.7
MBI16_g24180_MAGBIO Magnolia biondii HOM05D005568 ORTHO05D006940 4.2e-14 81.3 105 45.7
Ah.12g059120 Amaranthus hybridus HOM05D005568 ORTHO05D006940 1.2e-13 79.7 104 43.3
Cc11_g11980 Coffea canephora HOM05D005568 ORTHO05D006940 1.6e-13 79.3 105 43.8
Hund10887 Selenicereus undatus HOM05D005568 ORTHO05D006940 1.6e-13 79.3 103 41.7
Gohir.A12G161300 Gossypium hirsutum HOM05D005568 ORTHO05D006940 2.7e-13 78.6 105 44.8
Nn3g17444 Nelumbo nucifera HOM05D005568 ORTHO05D006940 3.5e-13 78.2 87 50.6
SGA_v2.0_scaffold36G14456 Striga asiatica HOM05D005568 ORTHO05D006940 3.5e-13 78.2 104 43.3
Ciclev10031554m.g Citrus clementina HOM05D005568 ORTHO05D006940 4.6e-13 77.8 105 45.7
Lsat_1_v5_gn_8_46541 Lactuca sativa HOM05D005568 ORTHO05D006940 7.8e-13 77.0 105 45.7
PSO478G2131 Papaver somniferum HOM05D005568 ORTHO05D006940 7.8e-13 77.0 105 43.8
AUR62030755 Chenopodium quinoa HOM05D005568 ORTHO05D006940 1.3e-12 76.3 104 45.2
PSO017G2580 Papaver somniferum HOM05D005568 ORTHO05D006940 1.3e-12 76.3 105 43.8
MELO3C011420.2 Cucumis melo HOM05D005568 ORTHO05D006940 1.7e-12 75.9 107 42.1
Sed0026263 Sechium edule HOM05D005568 ORTHO05D006940 1.7e-12 75.9 105 42.9
Nitab4.5_0001487g0140 Nicotiana tabacum HOM05D005568 ORTHO05D006940 3.0e-12 75.1 105 46.7
HPP92_024922 Vanilla planifolia HOM05D005568 ORTHO05D006940 6.6e-12 73.9 105 39.0
ClCG08G010410 Citrullus lanatus HOM05D005568 ORTHO05D006940 8.7e-12 73.6 105 41.9
CsaV3_6G033680 Cucumis sativus L. HOM05D005568 ORTHO05D006940 4.3e-11 71.2 107 39.3
Glyma.02G116567 Glycine max HOM05D005568 ORTHO05D006940 5.6e-11 70.9 104 38.5
Lj2g0017860 Lotus japonicus HOM05D005568 ORTHO05D006940 5.6e-11 70.9 104 39.4
THA.LOC104824056 Tarenaya hassleriana HOM05D005568 ORTHO05D006940 5.6e-11 70.9 105 41.0
AL1G25570 Arabidopsis lyrata HOM05D005568 ORTHO05D006940 2.8e-10 68.6 106 40.6
Glyma.01G059200 Glycine max HOM05D005568 ORTHO05D006940 2.8e-10 68.6 104 39.4
arahy.Tifrunner.gnm1.ann1.MYF1K6 Arachis hypogaea HOM05D005568 ORTHO05D006940 3.6e-10 68.2 104 38.5
VMungo1215G2929 Vigna mungo HOM05D005568 ORTHO05D006940 3.6e-10 68.2 105 36.2
arahy.Tifrunner.gnm1.ann1.TQ64T1 Arachis hypogaea HOM05D005568 ORTHO05D006940 4.8e-10 67.8 104 38.5
AT1G13770 Arabidopsis thaliana HOM05D005568 ORTHO05D006940 6.2e-10 67.4 106 40.6
Atru.BG.280.p Acer truncatum HOM05D005568 ORTHO05D006940 8.1e-10 67.0 90 40.0
TPR.G24479 Trifolium pratense HOM05D005568 ORTHO05D006940 8.1e-10 67.0 105 37.1
Lalb_Chr10g0098831 Lupinus albus HOM05D005568 ORTHO05D006940 1.1e-09 66.6 106 39.6
Aa31LG1G1170 Aethionema arabicum HOM05D005568 ORTHO05D006940 1.4e-09 66.2 105 36.2
Carub.0001s1349 Capsella rubella HOM05D005568 ORTHO05D006940 1.4e-09 66.2 106 41.5
ATR0907G009 Amborella trichopoda HOM05D005568 ORTHO05D006940 1.8e-09 65.9 105 37.1
CARHR014160 Cardamine hirsuta HOM05D005568 ORTHO05D006940 1.8e-09 65.9 106 40.6
Medtr5g044720 Medicago truncatula HOM05D005568 ORTHO05D006940 2.4e-09 65.5 105 39.0
PGR102G3278 Punica granatum HOM05D005568 ORTHO05D006940 2.4e-09 65.5 105 39.0
BcaB02g06475 Brassica carinata HOM05D005568 ORTHO05D006940 3.1e-09 65.1 106 37.7
Phvul.003G042500 Phaseolus vulgaris HOM05D005568 ORTHO05D006940 3.1e-09 65.1 104 36.5
Sp1g12160 Schrenkiella parvula HOM05D005568 ORTHO05D006940 5.3e-09 64.3 106 37.7
A06p09820 Brassica napus HOM05D005568 ORTHO05D006940 1.2e-08 63.2 106 38.7
unitig_22.g6492 Utricularia gibba HOM05D005568 ORTHO05D006940 1.2e-08 63.2 107 39.3
BcaC05g25284 Brassica carinata HOM05D005568 ORTHO05D006940 9.9e-08 60.1 106 35.8
C05p11620 Brassica napus HOM05D005568 ORTHO05D006940 9.9e-08 60.1 106 35.8
BolC5t29908H Brassica oleracea HOM05D005568 ORTHO05D006940 9.9e-08 60.1 106 35.8
BraA06t24172Z Brassica rapa HOM05D005568 ORTHO05D006940 8.4e-07 57.0 105 36.2
Thhalv10007655m.g Eutrema salsugineum HOM05D005568 ORTHO05D006940 1.9e-06 55.8 106 34.0
QL03p072672 Quercus lobata HOM05D005568 ORTHO05D006940 7.1e-06 53.9 37 67.6
COL.COLO4_27886 Corchorus olitorius HOM05D005568 ORTHO05D006940 9.3e-06 53.5 37 62.2


User provided reference genes

Program Settings