Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 0.0e+00 1903.6 1026 100.0
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 0.0e+00 1511.5 1026 78.5
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 0.0e+00 1488.0 1062 76.9
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 0.0e+00 1476.8 1022 78.6
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 0.0e+00 1473.0 1022 78.5
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1462.2 1022 77.3
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1461.4 1033 76.5
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 0.0e+00 1448.3 1022 74.6
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 0.0e+00 1444.1 1022 73.7
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1443.7 1021 73.8
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1438.3 1021 73.8
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1437.6 1021 73.6
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 0.0e+00 1434.1 1095 71.5
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 0.0e+00 1433.7 1002 76.6
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 0.0e+00 1418.3 1020 74.0
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 0.0e+00 1412.9 1024 75.9
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1411.4 1029 75.6
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1410.6 1028 75.5
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 0.0e+00 1409.4 1020 73.9
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 0.0e+00 1407.9 1061 72.9
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 0.0e+00 1406.7 1022 71.7
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 0.0e+00 1405.6 1020 76.5
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 0.0e+00 1401.7 1021 71.5
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 0.0e+00 1400.2 1021 73.9
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1399.0 1021 74.6
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 0.0e+00 1398.6 1025 74.4
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 0.0e+00 1392.5 1020 74.7
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1389.0 1022 75.6
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1388.6 1016 75.4
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 0.0e+00 1386.7 1021 72.9
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1381.3 1022 70.2
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 0.0e+00 1377.1 1022 73.6
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 0.0e+00 1375.9 1084 70.9
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 0.0e+00 1370.1 1022 71.4
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1370.1 1051 68.3
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 0.0e+00 1365.5 1074 69.5
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1364.7 1024 69.5
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1363.2 1024 69.5
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1350.9 1094 68.2
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1350.5 1086 68.6
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1347.0 1021 72.4
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 0.0e+00 1344.3 1014 69.8
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 0.0e+00 1343.9 1006 70.3
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 0.0e+00 1341.3 1032 71.4
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 0.0e+00 1337.0 1022 69.7
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 0.0e+00 1335.5 1036 71.1
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 0.0e+00 1324.7 1009 70.0
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1318.1 1019 71.1
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1317.0 1019 69.5
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1317.0 1019 69.5
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 0.0e+00 1315.4 1019 70.6
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 0.0e+00 1314.3 1014 71.1
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 0.0e+00 1310.8 1022 71.2
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 0.0e+00 1307.7 1025 68.4
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 0.0e+00 1307.7 1032 70.2
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 0.0e+00 1303.5 1019 71.4
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 0.0e+00 1297.3 1027 67.3
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 0.0e+00 1295.0 1021 68.6
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1292.3 1056 68.3
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 0.0e+00 1291.6 1024 68.1
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1289.2 1026 67.3
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1286.6 1020 67.2
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 0.0e+00 1284.6 1042 68.5
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1283.5 1028 70.0
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 0.0e+00 1273.1 1017 67.4
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 0.0e+00 1255.7 1023 64.9
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1255.4 1041 64.5
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 0.0e+00 1248.8 1020 68.9
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1248.4 1039 66.2
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 0.0e+00 1247.6 1025 66.4
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 0.0e+00 1245.7 1034 63.5
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 0.0e+00 1244.6 1020 68.7
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1241.1 1033 64.2
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 0.0e+00 1240.7 1025 68.3
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 0.0e+00 1239.9 1021 67.0
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 0.0e+00 1238.4 977 70.4
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 0.0e+00 1237.6 1031 67.4
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 0.0e+00 1236.5 1019 68.6
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 0.0e+00 1236.5 1021 66.8
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 0.0e+00 1234.9 1024 66.2
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 0.0e+00 1233.0 1004 69.3
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 0.0e+00 1232.2 1030 67.0
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 0.0e+00 1231.9 1019 68.0
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 0.0e+00 1225.3 1028 66.3
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 0.0e+00 1221.8 1021 66.3
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 0.0e+00 1219.5 1347 55.2
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 0.0e+00 1210.3 1012 67.0
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 0.0e+00 1203.3 1026 63.5
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 0.0e+00 1203.3 1021 67.4
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 0.0e+00 1203.0 1018 65.7
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 0.0e+00 1190.6 1021 65.6
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 0.0e+00 1173.3 1001 65.5
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 0.0e+00 1172.9 1075 60.2
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 0.0e+00 1170.2 1013 63.4
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 0.0e+00 1169.1 1022 61.9
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 0.0e+00 1166.0 1020 65.8
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 0.0e+00 1146.0 1022 64.6
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 0.0e+00 1145.6 1048 60.3
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 0.0e+00 1119.8 1031 61.8
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1119.4 847 68.8
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1117.4 1058 60.1
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 0.0e+00 1097.0 1029 60.4
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 0.0e+00 1094.3 833 72.7
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 0.0e+00 1075.8 1009 60.6
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 3.7e-303 1045.0 806 70.7
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 4.4e-296 1021.5 851 63.0
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 1.3e-295 1020.0 626 82.9
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 2.0e-288 996.1 901 61.8
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 2.0e-285 986.1 563 86.7
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 7.5e-280 967.6 1057 53.5
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 9.8e-280 967.2 919 57.1
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 1.3e-268 930.2 721 67.5
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 2.8e-258 896.0 812 65.3
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 5.2e-257 891.7 1028 51.1
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 1.2e-250 870.5 493 87.6
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 1.9e-246 856.7 544 80.9
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 3.4e-240 835.9 1031 49.9
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 2.4e-233 813.1 1024 44.7
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 6.9e-233 811.6 1024 44.6
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 2.9e-223 779.6 620 73.2
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 6.0e-205 718.8 621 64.1
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.5e-203 714.1 1026 42.2
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 8.2e-202 708.4 777 55.5
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 1.7e-194 684.1 1014 42.6
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 2.5e-190 670.2 396 82.3
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 4.1e-185 652.9 396 81.1
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.4e-182 644.4 403 79.2
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 1.9e-174 617.5 1261 37.5
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 6.1e-165 585.9 510 66.9
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 9.2e-153 545.4 408 69.9
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 1.0e-119 435.6 399 59.9
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 1.0e-111 409.1 267 74.9
Zm00001eb341830 Zea mays HOM05D003588 ORTHO05D004252 6.7e-95 353.2 221 76.5
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 9.7e-78 296.2 403 52.4
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 6.3e-69 266.9 210 65.2
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.8e-68 265.4 171 83.6
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 9.1e-68 263.1 375 41.6
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 5.9e-67 260.4 180 68.9
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 5.0e-66 257.3 207 63.8
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 9.7e-62 243.0 159 76.7
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 5.5e-57 227.3 207 61.8
Gohir.A08G093462 Gossypium hirsutum HOM05D003588 ORTHO05D004252 6.5e-50 203.8 166 63.9
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 4.0e-47 194.5 202 54.0
Thhalv10014979m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 1.3e-42 179.5 133 72.9
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 4.7e-40 171.0 253 44.3
Lalb_Chr00c03g0404241 Lupinus albus HOM05D003588 ORTHO05D004252 7.8e-35 153.7 111 69.4
arahy.Tifrunner.gnm1.ann1.LXU3L0 Arachis hypogaea HOM05D003588 ORTHO05D004252 1.4e-28 132.9 151 51.7
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 2.4e-28 132.1 83 74.7
Lalb_Chr00c03g0404231 Lupinus albus HOM05D003588 ORTHO05D004252 7.0e-28 130.6 104 56.7
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 1.2e-27 129.8 278 36.7
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 1.2e-27 129.8 278 36.7
Cre03.g205137 Chlamydomonas reinhardtii HOM05D003588 ORTHO05D004252 1.0e-26 126.7 193 35.2
QL04p012055 Quercus lobata HOM05D003588 ORTHO05D004252 3.3e-25 121.7 73 82.2
Lsat_1_v5_gn_9_96101 Lactuca sativa HOM05D003588 ORTHO05D004252 1.2e-24 119.8 93 69.9
CSS0049688 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 2.6e-22 112.1 280 32.5
Dinv12730 Davidia involucrata HOM05D003588 ORTHO05D004252 1.4e-20 106.3 65 76.9
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 1.4e-20 106.3 86 62.8
BcaB08g36855 Brassica carinata HOM05D003588 ORTHO05D004252 1.2e-19 103.2 105 61.0
Aa31sc24G110 Aethionema arabicum HOM05D003588 ORTHO05D004252 1.6e-19 102.8 145 46.2
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 4.3e-17 94.7 179 52.0
Aqoxy1G03195 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.2e-14 86.7 65 61.5
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 4.1e-12 78.2 45 77.8
Ca_10866_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.7e-10 72.8 130 62.3
TPR.G213 Trifolium pratense HOM05D003588 ORTHO05D004252 6.6e-10 70.9 36 86.1
AagrBONN_evm.TU.Sc2ySwM_228.5767 Anthoceros agrestis HOM05D003588 ORTHO05D004252 2.8e-08 65.5 72 47.2
Lsat_1_v5_gn_1_73461 Lactuca sativa HOM05D003588 ORTHO05D004252 2.8e-08 65.5 37 81.1
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 5.2e-07 61.2 37 75.7
Ca_04476_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 5.8e-06 57.8 173 28.9


User provided reference genes

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