Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01030864001 Vitis vinifera HOM05D008294 ORTHO05D010468 1.9e-93 345.9 184 100.0
Atru.chr13.2285 Acer truncatum HOM05D008294 ORTHO05D010468 1.8e-30 136.7 150 53.3
Ciclev10013091m.g Citrus clementina HOM05D008294 ORTHO05D010468 3.0e-30 136.0 144 54.9
Thecc.04G121200 Theobroma cacao HOM05D008294 ORTHO05D010468 4.3e-29 132.1 141 58.2
Gorai.008G058300 Gossypium raimondii HOM05D008294 ORTHO05D010468 6.3e-28 128.3 115 56.5
MSTRG.3520 Avicennia marina HOM05D008294 ORTHO05D010468 3.1e-27 125.9 151 49.7
Potri.004G088300 Populus trichocarpa HOM05D008294 ORTHO05D010468 6.9e-27 124.8 146 47.3
Sabra17G0107200 Salix brachista HOM05D008294 ORTHO05D010468 2.0e-26 123.2 159 50.3
Cpa.g.sc604.2 Carica papaya HOM05D008294 ORTHO05D010468 2.6e-26 122.9 105 59.0
TAR017G0001 Trochodendron aralioides HOM05D008294 ORTHO05D010468 3.4e-26 122.5 152 48.7
Manes.01G115600 Manihot esculenta HOM05D008294 ORTHO05D010468 1.3e-25 120.6 143 44.8
Lj1g0007014 Lotus japonicus HOM05D008294 ORTHO05D010468 1.7e-25 120.2 132 47.7
Cc07_g08180 Coffea canephora HOM05D008294 ORTHO05D010468 2.2e-25 119.8 124 53.2
Glyma.02G246900 Glycine max HOM05D008294 ORTHO05D010468 2.9e-25 119.4 137 46.0
QL11p004113 Quercus lobata HOM05D008294 ORTHO05D010468 5.0e-25 118.6 105 61.0
Oeu054753.1 Olea europaea HOM05D008294 ORTHO05D010468 1.1e-24 117.5 114 54.4
Phvul.008G234000 Phaseolus vulgaris HOM05D008294 ORTHO05D010468 1.9e-24 116.7 138 47.8
Potri.017G128700 Populus trichocarpa HOM05D008294 ORTHO05D010468 5.5e-24 115.2 142 45.8
HanXRQChr14g0439951 Helianthus annuus HOM05D008294 ORTHO05D010468 9.4e-24 114.4 141 46.8
Lalb_Chr04g0251301 Lupinus albus HOM05D008294 ORTHO05D010468 3.6e-23 112.5 145 43.4
Glyma.14G069300 Glycine max HOM05D008294 ORTHO05D010468 4.6e-23 112.1 136 43.4
MBI10_g08546_MAGBIO Magnolia biondii HOM05D008294 ORTHO05D010468 4.6e-23 112.1 160 43.8
Gohir.D12G055400 Gossypium hirsutum HOM05D008294 ORTHO05D010468 1.8e-22 110.2 121 48.8
Nn3g18213 Nelumbo nucifera HOM05D008294 ORTHO05D010468 8.8e-22 107.8 148 43.9
Lalb_Chr17g0346181 Lupinus albus HOM05D008294 ORTHO05D010468 1.1e-21 107.5 140 40.7
EL10Ac2g04485 Beta vulgaris HOM05D008294 ORTHO05D010468 2.0e-21 106.7 173 42.8
SalBow7G4521 Salvia bowleyana HOM05D008294 ORTHO05D010468 2.0e-21 106.7 144 50.0
AUR62023240 Chenopodium quinoa HOM05D008294 ORTHO05D010468 3.3e-21 105.9 174 43.7
DCAR_025875 Daucus carota HOM05D008294 ORTHO05D010468 5.7e-21 105.1 138 45.7
SGA_v2.0_scaffold329G48860 Striga asiatica HOM05D008294 ORTHO05D010468 5.7e-21 105.1 143 46.2
arahy.Tifrunner.gnm1.ann1.RHD4AQ Arachis hypogaea HOM05D008294 ORTHO05D010468 7.4e-21 104.8 148 41.2
arahy.Tifrunner.gnm1.ann1.HG0CBG Arachis hypogaea HOM05D008294 ORTHO05D010468 9.7e-21 104.4 148 40.5
Sed0009315 Sechium edule HOM05D008294 ORTHO05D010468 2.8e-20 102.8 141 44.7
Prupe.3G159000 Prunus persica HOM05D008294 ORTHO05D010468 1.1e-19 100.9 101 52.5
ClCG05G010930 Citrullus lanatus HOM05D008294 ORTHO05D010468 1.4e-19 100.5 147 44.9
Eucgr.F02821 Eucalyptus grandis HOM05D008294 ORTHO05D010468 1.8e-19 100.1 97 57.7
Lsat_1_v5_gn_2_81341 Lactuca sativa HOM05D008294 ORTHO05D010468 2.4e-19 99.8 133 44.4
MELO3C020292.2 Cucumis melo HOM05D008294 ORTHO05D010468 5.3e-19 98.6 148 45.9
Migut.L00469 Erythranthe guttata HOM05D008294 ORTHO05D010468 5.3e-19 98.6 150 44.7
ECA238G3741 Erigeron canadensis HOM05D008294 ORTHO05D010468 1.2e-18 97.4 87 55.2
Peaxi162Scf00118g00016 Petunia axillaris HOM05D008294 ORTHO05D010468 1.2e-18 97.4 139 43.9
CsaV3_3G021650 Cucumis sativus L. HOM05D008294 ORTHO05D010468 1.5e-18 97.1 153 43.8
VMungo0647G1342 Vigna mungo HOM05D008294 ORTHO05D010468 2.0e-18 96.7 137 45.3
Medtr5g079600 Medicago truncatula HOM05D008294 ORTHO05D010468 5.9e-18 95.1 128 41.4
Nitab4.5_0004399g0030 Nicotiana tabacum HOM05D008294 ORTHO05D010468 1.0e-17 94.4 72 58.3
Solyc02g091380.1 Solanum lycopersicum HOM05D008294 ORTHO05D010468 1.3e-17 94.0 105 50.5
Sopen02g036000 Solanum pennellii HOM05D008294 ORTHO05D010468 5.0e-17 92.0 105 49.5
Nitab4.5_0002366g0040 Nicotiana tabacum HOM05D008294 ORTHO05D010468 8.5e-17 91.3 104 47.1
PGSC0003DMG400030645 Solanum tuberosum HOM05D008294 ORTHO05D010468 3.2e-16 89.4 103 49.5
Nitab4.5_0002248g0070 Nicotiana tabacum HOM05D008294 ORTHO05D010468 3.6e-15 85.9 105 43.8
Sc10g0000850 Simmondsia chinensis HOM05D008294 ORTHO05D010468 3.9e-14 82.4 118 45.8
Migut.H00270 Erythranthe guttata HOM05D008294 ORTHO05D010468 2.6e-13 79.7 74 51.4
TPR.G3487 Trifolium pratense HOM05D008294 ORTHO05D010468 1.7e-12 77.0 124 34.7
Sopen03g007510 Solanum pennellii HOM05D008294 ORTHO05D010468 6.3e-12 75.1 99 42.4
SGA_v2.0_scaffold16G07882 Striga asiatica HOM05D002803 ORTHO05D003089 8.2e-12 74.7 161 37.3
PGSC0003DMG400016702 Solanum tuberosum HOM05D008294 ORTHO05D010468 1.1e-11 74.3 99 41.4
Psat2g041240 Pisum sativum HOM05D008294 ORTHO05D010468 4.1e-11 72.4 128 35.2
Ah.16g101330 Amaranthus hybridus HOM05D008294 ORTHO05D010468 2.0e-10 70.1 78 48.7
MSTRG.813 Avicennia marina HOM05D002803 ORTHO05D003089 2.6e-10 69.7 161 32.3
Lsat_1_v5_gn_1_15881 Lactuca sativa HOM05D002803 ORTHO05D003089 1.3e-09 67.4 110 40.9
Lsat_1_v5_gn_5_24961 Lactuca sativa HOM05D002803 ORTHO05D003089 1.3e-09 67.4 104 36.5
MD13G1047600 Malus domestica HOM05D002803 ORTHO05D003089 1.7e-09 67.0 144 34.7
Zm00001eb334540 Zea mays HOM05D008294 ORTHO05D010468 1.7e-09 67.0 92 37.0
Os01g0111700 Oryza sativa ssp. japonica HOM05D008294 ORTHO05D010468 5.0e-09 65.5 92 39.1
SEGI_10730 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 6.5e-09 65.1 152 29.6
Atru.chr9.745 Acer truncatum HOM05D002803 ORTHO05D003089 1.5e-08 63.9 77 42.9
Rhsim08G0138100 Rhododendron simsii HOM05D002803 ORTHO05D003089 1.5e-08 63.9 118 37.3
Actinidia38399 Actinidia chinensis HOM05D002803 ORTHO05D003089 1.9e-08 63.5 113 35.4
SEGI_15898 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.9e-08 63.5 90 37.8
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 2.5e-08 63.2 70 42.9
ECA246G0188 Erigeron canadensis HOM05D002803 ORTHO05D003089 3.2e-08 62.8 112 33.9
HanXRQChr12g0374281 Helianthus annuus HOM05D002803 ORTHO05D003089 3.2e-08 62.8 107 36.4
SEGI_33176 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 3.2e-08 62.8 133 33.1
Actinidia39806 Actinidia chinensis HOM05D002803 ORTHO05D003089 4.2e-08 62.4 125 36.0
MSTRG.2266 Avicennia marina HOM05D002803 ORTHO05D003089 4.2e-08 62.4 148 32.4
AUR62036944 Chenopodium quinoa HOM05D002803 ORTHO05D003089 4.2e-08 62.4 51 51.0
Duzib084G1194 Durio zibethinus HOM05D002803 ORTHO05D003089 4.2e-08 62.4 117 37.6
AUR62032184 Chenopodium quinoa HOM05D002803 ORTHO05D003089 7.2e-08 61.6 87 41.4
SEGI_13625 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 7.2e-08 61.6 133 30.8
SEGI_32988 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 7.2e-08 61.6 133 30.8
Thecc.03G027600 Theobroma cacao HOM05D002803 ORTHO05D003089 7.2e-08 61.6 127 36.2
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 9.4e-08 61.2 54 53.7
CiPaw.03G068500 Carya illinoinensis HOM05D008294 ORTHO05D010468 1.2e-07 60.8 116 41.4
MBI10_g08547_MAGBIO Magnolia biondii HOM05D002803 ORTHO05D003089 1.2e-07 60.8 115 35.7
Medtr1g067620 Medicago truncatula HOM05D002803 ORTHO05D003089 1.2e-07 60.8 49 53.1
Medtr1g093840 Medicago truncatula HOM05D002803 ORTHO05D003089 1.6e-07 60.5 51 49.0
Oeu033581.1 Olea europaea HOM05D002803 ORTHO05D003089 1.6e-07 60.5 108 37.0
Gohir.A11G007400 Gossypium hirsutum HOM05D002803 ORTHO05D003089 2.1e-07 60.1 118 38.1
Gohir.D11G006500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 2.1e-07 60.1 118 38.1
ATR0053G030 Amborella trichopoda HOM05D002803 ORTHO05D003089 2.7e-07 59.7 42 54.8
Oeu063395.1 Olea europaea HOM05D002803 ORTHO05D003089 2.7e-07 59.7 74 39.2
Prupe.1G304400 Prunus persica HOM05D002803 ORTHO05D003089 2.7e-07 59.7 143 35.0
Sabra10G0099500 Salix brachista HOM05D002803 ORTHO05D003089 2.7e-07 59.7 142 33.8
Sed0002511 Sechium edule HOM05D002803 ORTHO05D003089 2.7e-07 59.7 122 33.6
DCAR_011342 Daucus carota HOM05D002803 ORTHO05D003089 3.6e-07 59.3 116 37.9
Cpa.g.sc13.62 Carica papaya HOM05D002803 ORTHO05D003089 4.7e-07 58.9 75 40.0
Duzib251G0623 Durio zibethinus HOM05D002803 ORTHO05D003089 4.7e-07 58.9 123 33.3
Glyma.05G013700 Glycine max HOM05D002803 ORTHO05D003089 4.7e-07 58.9 108 38.0
Gorai.007G007800 Gossypium raimondii HOM05D002803 ORTHO05D003089 4.7e-07 58.9 118 37.3
Potri.010G130600 Populus trichocarpa HOM05D002803 ORTHO05D003089 4.7e-07 58.9 141 26.2
TPR.G9796 Trifolium pratense HOM05D002803 ORTHO05D003089 4.7e-07 58.9 39 56.4
Gorai.008G285200 Gossypium raimondii HOM05D002803 ORTHO05D003089 6.1e-07 58.5 125 36.0
Lj5g0014631 Lotus japonicus HOM05D002803 ORTHO05D003089 6.1e-07 58.5 48 47.9
Prupe.5G216600 Prunus persica HOM05D002803 ORTHO05D003089 6.1e-07 58.5 121 33.1
unitig_699.g19513 Utricularia gibba HOM05D002803 ORTHO05D003089 6.1e-07 58.5 52 38.5
COL.COLO4_22704 Corchorus olitorius HOM05D002803 ORTHO05D003089 8.0e-07 58.2 76 42.1
Glyma.17G018400 Glycine max HOM05D002803 ORTHO05D003089 8.0e-07 58.2 93 29.0
Gohir.A12G265300 Gossypium hirsutum HOM05D002803 ORTHO05D003089 8.0e-07 58.2 125 36.0
Gohir.D12G265500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 8.0e-07 58.2 125 36.0
Nitab4.5_0003716g0110 Nicotiana tabacum HOM05D002803 ORTHO05D003089 8.0e-07 58.2 49 51.0
TPR.G9792 Trifolium pratense HOM05D002803 ORTHO05D003089 8.0e-07 58.2 49 46.9
Cc11_g10690 Coffea canephora HOM05D002803 ORTHO05D003089 1.0e-06 57.8 161 27.3
Nn4g23707 Nelumbo nucifera HOM05D002803 ORTHO05D003089 1.0e-06 57.8 122 35.2
Nn4g23709 Nelumbo nucifera HOM05D002803 ORTHO05D003089 1.0e-06 57.8 122 35.2
Sabra12G0042700 Salix brachista HOM05D002803 ORTHO05D003089 1.0e-06 57.8 128 32.8
Dinv38592 Davidia involucrata HOM05D002803 ORTHO05D003089 1.4e-06 57.4 128 31.2
Lalb_Chr02g0151801 Lupinus albus HOM05D002803 ORTHO05D003089 1.4e-06 57.4 42 54.8
PGR102G2995 Punica granatum HOM05D002803 ORTHO05D003089 1.4e-06 57.4 80 35.0
Sed0021519 Sechium edule HOM05D002803 ORTHO05D003089 1.4e-06 57.4 144 31.9
Ah.03g137920 Amaranthus hybridus HOM05D002803 ORTHO05D003089 1.8e-06 57.0 174 29.3
CiPaw.15G125800 Carya illinoinensis HOM05D002803 ORTHO05D003089 1.8e-06 57.0 77 40.3
DCAR_015130 Daucus carota HOM05D002803 ORTHO05D003089 1.8e-06 57.0 96 34.4
DCAR_023180 Daucus carota HOM05D002803 ORTHO05D003089 1.8e-06 57.0 65 43.1
FvH4_5g12760 Fragaria vesca HOM05D002803 ORTHO05D003089 1.8e-06 57.0 113 35.4
FAN18G3348 Fragaria x ananassa HOM05D002803 ORTHO05D003089 1.8e-06 57.0 113 35.4
FAN18G3648 Fragaria x ananassa HOM05D002803 ORTHO05D003089 1.8e-06 57.0 113 35.4
Peaxi162Scf00015g00069 Petunia axillaris HOM05D002803 ORTHO05D003089 1.8e-06 57.0 92 38.0
Solyc03g119810.1 Solanum lycopersicum HOM05D002803 ORTHO05D003089 1.8e-06 57.0 113 37.2
TPR.G31371 Trifolium pratense HOM05D002803 ORTHO05D003089 1.8e-06 57.0 84 38.1
EL10Ac5g11244 Beta vulgaris HOM05D002803 ORTHO05D003089 2.3e-06 56.6 49 46.9
FAN08G1483 Fragaria x ananassa HOM05D002803 ORTHO05D003089 2.3e-06 56.6 113 35.4
Glyma.17G121900 Glycine max HOM05D002803 ORTHO05D003089 2.3e-06 56.6 114 36.0
Hma1.2p1_0340F.1_g129940 Hydrangea macrophylla HOM05D002803 ORTHO05D003089 2.3e-06 56.6 105 38.1
MD14G1221200 Malus domestica HOM05D002803 ORTHO05D003089 2.3e-06 56.6 126 31.7
Peaxi162Scf00013g00098 Petunia axillaris HOM05D002803 ORTHO05D003089 2.3e-06 56.6 110 33.6
Duzib205G0759 Durio zibethinus HOM05D002803 ORTHO05D003089 3.0e-06 56.2 122 37.7
Migut.L01101 Erythranthe guttata HOM05D002803 ORTHO05D003089 3.0e-06 56.2 131 32.1
HanXRQChr02g0042761 Helianthus annuus HOM05D002803 ORTHO05D003089 3.0e-06 56.2 92 37.0
CSS0037901 Camellia sinensis var. sinensis HOM05D002803 ORTHO05D003089 4.0e-06 55.8 116 33.6
Ciclev10022495m.g Citrus clementina HOM05D002803 ORTHO05D003089 4.0e-06 55.8 79 40.5
PGR083G1726 Punica granatum HOM05D002803 ORTHO05D003089 4.0e-06 55.8 75 40.0
SGA_v2.0_scaffold59G20630 Striga asiatica HOM05D002803 ORTHO05D003089 4.0e-06 55.8 162 29.6
Zm00001eb252480 Zea mays HOM05D002803 ORTHO05D003089 4.0e-06 55.8 79 34.2
Zm00001eb252490 Zea mays HOM05D002803 ORTHO05D003089 4.0e-06 55.8 36 61.1
Zm00001eb359270 Zea mays HOM05D002803 ORTHO05D003089 4.0e-06 55.8 87 36.8
FAN13G3198 Fragaria x ananassa HOM05D002803 ORTHO05D003089 5.2e-06 55.5 113 34.5
SalBow8G3504 Salvia bowleyana HOM05D002803 ORTHO05D003089 5.2e-06 55.5 64 32.8
AL1G55870 Arabidopsis lyrata HOM05D002803 ORTHO05D003089 8.8e-06 54.7 143 33.6
CDE07G1489 Ceratophyllum demersum HOM05D002803 ORTHO05D001341 8.8e-06 54.7 122 32.8
Dinv16513 Davidia involucrata HOM05D002803 ORTHO05D003089 8.8e-06 54.7 130 29.2
HanXRQChr02g0042791 Helianthus annuus HOM05D002803 ORTHO05D003089 8.8e-06 54.7 93 34.4
Phvul.003G177700 Phaseolus vulgaris HOM05D002803 ORTHO05D003089 8.8e-06 54.7 79 40.5
Psat1g024640 Pisum sativum HOM05D002803 ORTHO05D003089 8.8e-06 54.7 81 35.8
Potri.012G059500 Populus trichocarpa HOM05D002803 ORTHO05D003089 8.8e-06 54.7 126 32.5
Sopen03g038670 Solanum pennellii HOM05D002803 ORTHO05D003089 8.8e-06 54.7 113 37.2


User provided reference genes

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