Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 0.0e+00 1649.0 816 100.0
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 0.0e+00 1221.1 813 73.9
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 0.0e+00 1199.5 814 71.5
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1166.4 814 70.6
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 0.0e+00 1164.1 814 70.0
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 0.0e+00 1163.3 814 71.0
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1162.9 812 70.1
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1151.0 814 69.8
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1150.2 816 69.9
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1148.3 816 69.7
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 0.0e+00 1135.2 817 68.7
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 0.0e+00 1134.4 874 65.4
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 0.0e+00 1132.9 816 67.9
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1124.8 815 69.2
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 0.0e+00 1124.4 813 67.7
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1122.5 819 66.8
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 0.0e+00 1121.7 820 67.6
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1119.0 813 66.4
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 0.0e+00 1118.6 813 66.4
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1118.2 813 66.5
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 0.0e+00 1110.5 816 66.8
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 0.0e+00 1110.1 851 65.6
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 0.0e+00 1102.0 816 67.2
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 0.0e+00 1099.7 815 65.4
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 0.0e+00 1095.9 818 66.5
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 0.0e+00 1081.6 820 66.6
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 0.0e+00 1080.9 811 65.1
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 0.0e+00 1078.5 814 65.4
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 0.0e+00 1077.4 812 65.9
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 0.0e+00 1076.6 812 65.6
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 0.0e+00 1076.6 813 65.3
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 5.6e-312 1074.7 817 65.7
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 5.6e-312 1074.3 811 65.1
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 5.6e-312 1073.5 816 64.5
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 2.8e-311 1071.6 786 66.4
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.1e-310 1069.7 818 65.8
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 3.2e-310 1068.1 817 65.4
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 4.0e-308 1061.2 834 65.1
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.3e-307 1058.1 817 64.9
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 1.1e-305 1053.1 811 63.6
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 3.1e-305 1051.6 812 64.3
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 4.1e-305 1051.2 814 63.3
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 7.7e-304 1047.0 813 64.3
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 2.9e-303 1045.0 811 64.6
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 8.5e-303 1043.5 811 64.1
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 1.9e-302 1042.3 819 63.1
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 3.6e-301 1038.1 816 63.5
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 6.1e-301 1037.3 819 63.7
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.8e-300 1035.8 880 61.0
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 3.7e-298 1028.1 820 63.2
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 6.3e-298 1027.3 812 63.2
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 6.3e-298 1027.3 814 62.3
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 3.1e-297 1025.0 814 62.8
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 9.4e-294 1013.4 816 62.5
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.4e-292 1009.6 814 61.8
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 3.4e-291 1005.0 815 61.5
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 2.2e-290 1002.3 841 61.2
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 1.1e-289 1000.0 815 62.0
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 5.4e-289 997.7 826 60.9
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 2.3e-287 992.3 813 61.0
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 8.6e-287 990.3 814 61.5
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 1.5e-286 989.6 815 60.0
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 2.8e-285 985.3 814 61.3
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 2.3e-284 982.2 815 61.5
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 3.0e-284 981.9 813 60.0
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 2.6e-283 978.8 814 60.2
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 4.9e-282 974.5 830 60.8
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 2.4e-281 972.2 821 59.2
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 5.4e-281 971.1 820 58.8
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 7.0e-281 970.7 820 58.9
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 9.2e-281 970.3 819 59.0
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 7.8e-280 967.2 819 58.5
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 7.3e-278 960.7 820 60.4
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 2.1e-277 959.1 818 58.4
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 8.0e-277 957.2 818 58.3
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 8.0e-277 957.2 818 58.3
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 1.4e-276 956.4 815 59.6
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 5.2e-276 954.5 818 58.1
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 5.8e-275 951.0 824 57.8
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 7.5e-275 950.7 826 57.5
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 1.4e-273 946.4 813 58.1
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 6.0e-272 941.0 818 59.9
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 7.8e-272 940.6 819 60.1
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 2.5e-270 935.6 824 56.9
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 9.2e-265 917.1 812 58.3
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 2.7e-264 915.6 811 57.5
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 6.8e-260 901.0 827 57.1
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 1.3e-258 896.7 818 56.4
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 2.1e-256 889.4 626 68.8
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 3.3e-254 882.1 814 55.0
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.1e-253 879.4 813 56.2
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 5.8e-251 871.3 817 53.7
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 1.7e-250 869.8 815 56.8
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 1.0e-247 860.5 582 72.0
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 9.6e-238 827.4 823 51.9
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 5.3e-236 821.6 734 58.3
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 7.6e-235 817.8 821 52.5
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 6.7e-231 804.7 537 72.8
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 2.8e-229 799.3 888 50.0
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 2.1e-216 756.5 816 49.0
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.6e-192 677.2 819 46.8
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 3.0e-191 672.9 461 72.2
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 8.8e-191 671.4 821 46.9
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 8.0e-184 648.3 853 44.8
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 5.9e-179 632.1 825 43.2
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 1.8e-172 610.5 829 43.9
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 6.6e-162 575.5 477 61.4
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 5.4e-156 555.8 589 51.8
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 3.5e-155 553.1 819 41.3
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 1.2e-152 544.7 845 37.2
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 4.0e-151 539.7 672 45.5
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 5.1e-146 522.7 815 40.1
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 2.7e-139 500.4 837 36.9
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 5.1e-138 496.1 857 36.3
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 9.9e-134 481.9 824 38.5
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 2.4e-127 460.7 839 35.5
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 9.0e-127 458.8 338 65.4
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 1.2e-107 395.2 422 51.4
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 2.9e-93 347.4 693 30.7
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.4e-84 318.5 405 46.4
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 2.0e-65 255.0 153 77.8
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 3.4e-65 254.2 204 63.7
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 9.1e-63 246.1 749 29.0
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 7.7e-62 243.0 280 47.9
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 1.1e-60 239.2 279 47.3
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 1.2e-59 235.7 279 47.3
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 4.0e-50 204.1 206 52.4
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 6.4e-48 196.8 163 62.6
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 1.9e-44 185.3 841 23.2
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 2.7e-38 164.9 135 60.0
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 1.9e-36 158.7 466 30.0
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 3.6e-35 154.5 133 54.9
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 6.4e-32 143.7 104 65.4
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 5.1e-21 107.5 98 56.1
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 1.7e-16 92.4 68 66.2
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 6.4e-16 90.5 68 58.8
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 8.4e-16 90.1 110 45.5
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 1.9e-15 89.0 110 45.5
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 7.1e-15 87.0 59 72.9
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.1e-10 73.2 79 46.8
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 2.4e-10 72.0 97 43.3
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 5.8e-09 67.4 46 67.4
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 1.3e-08 66.2 46 65.2
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 2.7e-06 58.5 48 58.3
Lsat_1_v5_gn_4_117360 Lactuca sativa HOM05D004893 ORTHO05D006320 4.6e-06 57.8 83 42.2


User provided reference genes

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