Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 0.0e+00 1303.1 672 100.0
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 4.2e-308 1060.8 664 80.3
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 1.6e-291 1005.7 674 75.2
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 2.8e-291 1005.0 647 78.1
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 4.0e-290 1001.1 643 76.8
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 3.7e-288 994.6 672 75.0
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 3.2e-287 991.5 672 73.2
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 1.7e-285 985.7 645 75.7
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 3.0e-285 984.9 672 74.7
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 6.2e-283 977.2 668 74.7
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 4.0e-282 974.5 667 72.7
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 8.9e-282 973.4 667 74.1
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 2.6e-281 971.8 672 72.5
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 3.7e-280 968.0 667 73.9
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 4.9e-280 967.6 667 73.3
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 2.4e-279 965.3 668 72.2
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 9.2e-279 963.4 664 72.4
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 1.6e-278 962.6 665 72.6
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 4.6e-278 961.1 664 73.0
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 1.0e-277 959.9 667 71.5
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 2.3e-277 958.7 665 72.3
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 3.9e-277 958.0 698 69.9
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 2.5e-276 955.3 668 71.1
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 4.7e-275 951.0 644 73.8
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 1.4e-274 949.5 654 74.3
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 3.4e-273 944.9 663 70.9
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 4.4e-273 944.5 668 71.6
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 7.6e-273 943.7 668 71.1
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 1.2e-270 936.4 674 70.0
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 2.1e-270 935.6 672 72.0
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 1.3e-269 932.9 669 70.6
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 1.7e-269 932.6 668 69.9
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 1.7e-269 932.6 644 71.3
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 1.9e-268 929.1 672 69.6
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 1.3e-267 926.4 666 69.7
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 2.1e-267 925.6 683 69.1
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 4.8e-267 924.5 672 68.5
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 6.2e-267 924.1 672 68.3
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 2.4e-266 922.2 664 69.3
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 4.0e-266 921.4 693 67.8
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 1.5e-265 919.5 643 71.2
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 2.6e-265 918.7 672 68.8
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 2.6e-265 918.7 672 68.8
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 5.8e-265 917.5 665 69.6
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 1.1e-263 913.3 673 68.1
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 1.9e-263 912.5 669 67.6
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 2.4e-263 912.1 669 67.1
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 1.2e-262 909.8 632 73.1
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 1.6e-262 909.4 675 67.7
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 1.6e-262 909.4 689 67.2
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 3.0e-261 905.2 651 69.1
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 3.9e-261 904.8 666 66.7
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 7.4e-260 900.6 666 66.5
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 1.1e-258 896.7 718 65.0
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 4.9e-256 887.9 706 64.3
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 1.6e-254 882.9 672 65.8
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 6.0e-254 880.9 672 67.0
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 1.8e-253 879.4 672 67.1
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 2.3e-253 879.0 581 76.1
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 8.7e-253 877.1 731 62.8
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.3e-252 875.2 665 67.2
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 7.4e-252 874.0 671 67.5
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 3.7e-251 871.7 665 65.7
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 1.8e-250 869.4 663 64.4
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 2.6e-249 865.5 669 64.6
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 7.6e-249 864.0 670 64.3
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 2.9e-248 862.1 649 65.6
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.6e-246 856.3 579 72.4
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 4.6e-246 854.7 648 66.0
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 2.1e-243 845.9 634 64.8
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 2.8e-243 845.5 649 64.3
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 8.2e-243 844.0 674 62.9
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 8.2e-243 844.0 650 63.8
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 2.4e-242 842.4 667 62.8
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 9.0e-242 840.5 646 66.6
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 2.6e-241 839.0 695 62.9
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 1.0e-240 837.0 700 60.7
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 5.0e-240 834.7 665 63.2
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 1.1e-239 833.6 631 66.4
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 4.6e-238 828.2 711 62.2
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 6.7e-237 824.3 557 74.0
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 3.3e-236 822.0 647 65.7
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 2.4e-234 815.8 572 69.9
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 1.5e-233 813.1 719 57.9
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 2.6e-233 812.4 638 64.1
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 6.1e-230 801.2 665 62.4
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 9.7e-228 793.9 666 61.4
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 2.2e-227 792.7 664 61.4
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 3.1e-226 788.9 655 60.5
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.1e-226 787.3 665 62.3
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 2.0e-225 786.2 574 69.3
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 6.1e-222 774.6 671 59.2
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 1.8e-218 763.1 697 57.2
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 8.8e-213 744.2 664 58.9
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 1.1e-210 737.3 514 72.0
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 1.1e-199 700.7 678 56.0
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.2e-196 690.6 623 58.6
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 5.2e-189 665.2 494 67.4
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 8.3e-187 657.9 594 57.1
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 7.8e-169 598.2 692 47.3
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 1.7e-168 597.0 650 49.2
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 9.0e-149 531.6 351 75.5
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 4.3e-143 512.7 709 42.9
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 7.4e-127 458.8 320 72.2
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 2.5e-122 443.7 586 44.9
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 6.5e-107 392.5 648 41.2
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 4.1e-93 346.7 311 56.6
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 1.6e-89 334.7 355 54.1
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 2.8e-81 307.4 654 33.2
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.7e-78 298.1 240 63.8
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.6e-68 265.0 331 47.1
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 2.5e-50 204.5 176 58.5
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 4.7e-49 200.3 324 35.8
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 2.5e-42 177.9 753 27.1
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 2.0e-39 168.3 309 35.9
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 1.3e-35 155.6 115 66.1
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 9.9e-31 139.4 172 45.3
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 1.1e-26 125.9 107 60.7
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 3.7e-25 120.9 115 56.5
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 3.1e-24 117.9 110 57.3
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.1e-20 105.1 81 63.0
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 2.5e-18 98.2 72 59.7
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.6e-15 88.2 65 63.1
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.6e-15 88.2 53 67.9
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 1.7e-14 85.5 102 44.1
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 3.8e-14 84.3 62 64.5
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 3.8e-14 84.3 62 64.5
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 3.8e-14 84.3 50 76.0
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.9e-14 84.0 47 80.9
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.4e-13 82.4 47 78.7
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.3e-13 79.7 47 78.7
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 2.2e-09 68.6 42 71.4
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 4.8e-09 67.4 42 71.4
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 4.8e-09 67.4 42 73.8
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 2.4e-08 65.1 34 82.4
SGA_v2.0_scaffold17G07933 Striga asiatica HOM05D002544 ORTHO05D399483 5.0e-06 57.4 33 72.7


User provided reference genes

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