Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01030674001 Vitis vinifera HOM05D007545 ORTHO05D009579 1.1e-121 441.4 237 100.0
TAR371G0190 Trochodendron aralioides HOM05D007545 ORTHO05D009579 5.6e-70 269.6 234 59.4
Haze_14281 Corylus avellana HOM05D007545 ORTHO05D009579 1.8e-68 264.6 241 56.4
Cfa007791 Carpinus fangiana HOM05D007545 ORTHO05D009579 2.2e-66 257.7 238 55.5
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 2.4e-65 254.2 202 60.4
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 7.8e-64 249.2 200 60.0
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 8.7e-63 245.7 230 52.6
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 1.1e-62 245.4 241 54.4
Prupe.3G166000 Prunus persica HOM05D007545 ORTHO05D009579 4.3e-62 243.4 238 55.0
PSO478G2209 Papaver somniferum HOM05D007545 ORTHO05D009579 6.2e-61 239.6 230 51.7
CiPaw.03G073600 Carya illinoinensis HOM05D007545 ORTHO05D009579 1.4e-60 238.4 241 53.1
Gorai.004G048700 Gossypium raimondii HOM05D007545 ORTHO05D009579 2.4e-60 237.7 214 54.7
Gohir.D08G049200 Gossypium hirsutum HOM05D007545 ORTHO05D009579 1.5e-59 235.0 214 54.2
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 3.8e-58 230.3 241 51.0
QL08p020033 Quercus lobata HOM05D007545 ORTHO05D009579 6.4e-58 229.6 237 60.8
Aqoxy3G04069 Aquilegia oxysepala HOM05D007545 ORTHO05D009579 8.4e-58 229.2 230 62.2
MELO3C032020.2 Cucumis melo HOM05D007545 ORTHO05D009579 8.7e-55 219.2 216 51.4
SGA_v2.0_scaffold45G17151 Striga asiatica HOM05D007545 ORTHO05D009579 4.3e-54 216.9 231 48.1
Hma1.2p1_0158F.1_g070060 Hydrangea macrophylla HOM05D007545 ORTHO05D009579 1.3e-53 215.3 248 56.9
Manes.01G119900 Manihot esculenta HOM05D007545 ORTHO05D009579 1.3e-53 215.3 237 59.1
SalBow5G0095 Salvia bowleyana HOM05D007545 ORTHO05D009579 4.8e-53 213.4 205 52.7
MD17G1268500 Malus domestica HOM05D007545 ORTHO05D009579 4.0e-52 210.3 249 48.2
Oeu030299.1 Olea europaea HOM05D007545 ORTHO05D009579 5.3e-52 209.9 204 52.5
Cpa.g.sc340.2 Carica papaya HOM05D007545 ORTHO05D009579 6.9e-52 209.5 220 55.9
Migut.K00924 Erythranthe guttata HOM05D007545 ORTHO05D009579 9.9e-51 205.7 206 51.5
Sed0004069 Sechium edule HOM05D007545 ORTHO05D009579 3.8e-50 203.8 216 50.5
CANSAT64G1149 Cannabis sativa HOM05D007545 ORTHO05D009579 1.9e-49 201.4 214 50.5
RcHm_v2.0_Chr3g0491601 Rosa chinensis HOM05D007545 ORTHO05D009579 1.9e-49 201.4 249 45.0
Lalb_Chr10g0104281 Lupinus albus HOM05D007545 ORTHO05D009579 7.1e-49 199.5 234 48.3
Nitab4.5_0001650g0170 Nicotiana tabacum HOM05D007545 ORTHO05D009579 9.3e-49 199.1 225 49.3
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 1.2e-48 198.7 225 47.1
Eucgr.F02875 Eucalyptus grandis HOM05D007545 ORTHO05D009579 1.6e-48 198.4 207 48.3
Sc14g0006910 Simmondsia chinensis HOM05D007545 ORTHO05D009579 2.1e-48 198.0 202 58.4
Hund13089 Selenicereus undatus HOM05D007545 ORTHO05D009579 6.0e-48 196.4 221 48.4
Rhsim10G0178600 Rhododendron simsii HOM05D007545 ORTHO05D009579 1.3e-47 195.3 202 57.9
Ciclev10011347m.g Citrus clementina HOM05D007545 ORTHO05D009579 1.9e-46 191.4 215 47.4
Potri.017G131400 Populus trichocarpa HOM05D007545 ORTHO05D009579 3.3e-46 190.7 248 55.2
THA.LOC104805633 Tarenaya hassleriana HOM05D007545 ORTHO05D009579 3.3e-46 190.7 253 43.5
PGR004G2599 Punica granatum HOM05D007545 ORTHO05D009579 6.2e-45 186.4 257 45.1
Lsat_1_v5_gn_2_68461 Lactuca sativa HOM05D007545 ORTHO05D009579 8.2e-45 186.0 215 46.0
Thhalv10007116m.g Eutrema salsugineum HOM05D007545 ORTHO05D009579 9.0e-44 182.6 227 44.9
Aa31LG1G5330 Aethionema arabicum HOM05D007545 ORTHO05D009579 4.5e-43 180.3 255 42.0
CARHR009650 Cardamine hirsuta HOM05D007545 ORTHO05D009579 4.5e-43 180.3 225 43.6
AL1G20230 Arabidopsis lyrata HOM05D007545 ORTHO05D009579 1.7e-42 178.3 225 42.7
Sp1g08270 Schrenkiella parvula HOM05D001024 ORTHO05D009579 2.9e-42 177.6 228 43.9
ATR0661G317 Amborella trichopoda HOM05D007545 ORTHO05D009579 3.8e-42 177.2 202 47.0
C05p07760 Brassica napus HOM05D007545 ORTHO05D009579 3.8e-42 177.2 229 44.1
BolC5t29527H Brassica oleracea HOM05D007545 ORTHO05D009579 3.8e-42 177.2 229 44.1
BraA06t23847Z Brassica rapa HOM05D007545 ORTHO05D009579 4.9e-42 176.8 222 44.1
AT1G09680 Arabidopsis thaliana HOM05D007545 ORTHO05D009579 6.5e-42 176.4 233 42.1
FAN26G0753 Fragaria x ananassa HOM05D007545 ORTHO05D009579 1.9e-41 174.9 209 45.9
TPR.G23654 Trifolium pratense HOM05D007545 ORTHO05D009579 1.9e-41 174.9 217 46.1
A06p06360 Brassica napus HOM05D007545 ORTHO05D009579 9.3e-41 172.6 222 43.7
Glyma.02G243500 Glycine max HOM05D007545 ORTHO05D009579 1.6e-40 171.8 234 46.2
Carub.0001s0902 Capsella rubella HOM05D007545 ORTHO05D009579 2.1e-40 171.4 226 42.0
Medtr5g077930 Medicago truncatula HOM05D007545 ORTHO05D009579 1.3e-39 168.7 214 45.3
Nitab4.5_0001088g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 1.8e-39 168.3 204 47.5
FAN19G0914 Fragaria x ananassa HOM05D007545 ORTHO05D009579 3.9e-39 167.2 209 45.0
ECA238G0700 Erigeron canadensis HOM05D007545 ORTHO05D009579 5.1e-39 166.8 219 43.4
QL05p016537 Quercus lobata HOM05D007545 ORTHO05D009579 6.7e-39 166.4 156 65.4
HanXRQChr14g0457331 Helianthus annuus HOM05D007545 ORTHO05D009579 1.5e-38 165.2 205 44.4
Sed0020460 Sechium edule HOM05D007545 ORTHO05D009579 2.5e-38 164.5 219 43.8
Phvul.008G237700 Phaseolus vulgaris HOM05D007545 ORTHO05D009579 4.3e-38 163.7 212 44.8
VMungo0647G0528 Vigna mungo HOM05D007545 ORTHO05D009579 5.7e-38 163.3 212 45.3
Atru.chr1.1983 Acer truncatum HOM05D007545 ORTHO05D009579 9.7e-38 162.5 230 42.6
Actinidia06485 Actinidia chinensis HOM05D007545 ORTHO05D009579 6.7e-31 139.8 129 51.2
Nn3g18372 Nelumbo nucifera HOM05D007545 ORTHO05D009579 1.5e-30 138.7 116 56.0
ClCG05G010640 Citrullus lanatus HOM05D007545 ORTHO05D009579 1.7e-29 135.2 129 49.6
Gohir.D11G205366 Gossypium hirsutum HOM05D007545 ORTHO05D009579 4.5e-27 127.1 140 45.7
CsaV3_3G017850 Cucumis sativus L. HOM05D007545 ORTHO05D009579 5.0e-26 123.6 133 50.4
Lj4C259T9 Lonicera japonica HOM05D007545 ORTHO05D009579 2.5e-25 121.3 120 62.5
Gohir.A08G039000 Gossypium hirsutum HOM05D007545 ORTHO05D009579 4.7e-24 117.1 119 49.6
Sabra17G0109500 Salix brachista HOM05D007545 ORTHO05D009579 8.8e-23 112.8 129 57.4
Psat2g047200 Pisum sativum HOM05D007545 ORTHO05D009579 3.3e-22 110.9 133 47.4
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 2.2e-21 108.2 207 33.3
Peaxi162Scf00562g00002 Petunia axillaris HOM05D007545 ORTHO05D009579 3.1e-20 104.4 133 43.6
CAN.G222.58 Capsicum annuum HOM05D007545 ORTHO05D009579 9.1e-20 102.8 131 42.0
Nitab4.5_0001650g0140 Nicotiana tabacum HOM05D007545 ORTHO05D009579 9.1e-20 102.8 129 42.6
COL.COLO4_13423 Corchorus olitorius HOM05D007545 ORTHO05D009579 3.5e-19 100.9 76 57.9
Nitab4.5_0004239g0030 Nicotiana tabacum HOM05D007545 ORTHO05D009579 5.9e-19 100.1 122 42.6
ATR0753G016 Amborella trichopoda HOM05D007545 ORTHO05D009579 1.7e-18 98.6 71 57.7
Nitab4.5_0010123g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 3.8e-18 97.4 122 41.8
Ca_05835_v3 Cicer arietinum L. HOM05D007545 ORTHO05D009579 5.5e-17 93.6 77 51.9
Sopen11g006210 Solanum pennellii HOM05D007545 ORTHO05D009579 7.2e-17 93.2 122 39.3
Solyc11g011410.3 Solanum lycopersicum HOM05D007545 ORTHO05D009579 1.2e-16 92.4 122 39.3
PGSC0003DMG400013237 Solanum tuberosum HOM05D007545 ORTHO05D009579 6.1e-16 90.1 122 37.7
FvH4_1g30171 Fragaria vesca HOM05D007545 ORTHO05D009579 1.8e-15 88.6 104 51.9
Zm00001eb080530 Zea mays HOM05D007545 ORTHO05D009579 3.9e-15 87.4 210 29.0
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 1.4e-12 79.0 195 27.2
HPP92_026949 Vanilla planifolia HOM05D007545 ORTHO05D009579 3.1e-12 77.8 77 42.9
MBI05_g05281_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D009847 7.0e-12 76.6 176 26.7
Gorai.007G220500 Gossypium raimondii HOM05D007545 ORTHO05D009579 5.0e-10 70.5 143 32.9
ATR0751G228 Amborella trichopoda HOM05D007390 ORTHO05D009114 1.5e-09 68.9 151 29.1
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 1.5e-09 68.9 231 26.0
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 2.5e-09 68.2 173 26.6
ATR1089G063 Amborella trichopoda HOM05D008483 ORTHO05D010726 5.5e-09 67.0 200 25.0
Ciclev10014539m.g Citrus clementina HOM05D002890 ORTHO05D009847 7.2e-09 66.6 180 23.9
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 7.2e-09 66.6 180 23.9
TAR371G0226 Trochodendron aralioides HOM05D007347 ORTHO05D009296 2.7e-08 64.7 133 27.8
TAR629G3514 Trochodendron aralioides HOM05D007347 ORTHO05D009296 2.7e-08 64.7 133 27.8
Actinidia35406 Actinidia chinensis HOM05D007390 ORTHO05D009114 1.8e-07 62.0 152 25.0
Atru.chr10.2229 Acer truncatum HOM05D002890 ORTHO05D009847 2.3e-07 61.6 180 22.2
Dinv28181 Davidia involucrata HOM05D007545 ORTHO05D009579 3.0e-07 61.2 37 67.6
Sabra11G0001800 Salix brachista HOM05D002890 ORTHO05D009847 3.0e-07 61.2 210 25.2
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 4.0e-07 60.8 180 23.3
CAN.G113.7 Capsicum annuum HOM05D007455 ORTHO05D009431 5.2e-07 60.5 140 22.9
FAN23G0923 Fragaria x ananassa HOM05D007347 ORTHO05D009296 5.2e-07 60.5 145 26.2
FAN26G2104 Fragaria x ananassa HOM05D007347 ORTHO05D009296 5.2e-07 60.5 145 26.2
Aa31LG2G7790 Aethionema arabicum HOM05D007496 ORTHO05D009479 8.8e-07 59.7 144 26.4
FAN23G0930 Fragaria x ananassa HOM05D007347 ORTHO05D009296 8.8e-07 59.7 145 26.2
Lsat_1_v5_gn_2_86161 Lactuca sativa HOM05D007347 ORTHO05D009296 8.8e-07 59.7 157 26.1
RcHm_v2.0_Chr2g0114451 Rosa chinensis HOM05D007347 ORTHO05D009296 1.2e-06 59.3 141 28.4
RcHm_v2.0_Chr6g0269561 Rosa chinensis HOM05D007347 ORTHO05D009296 1.5e-06 58.9 143 28.0
Sabra11G0002200 Salix brachista HOM05D002890 ORTHO05D009847 1.5e-06 58.9 210 24.8
Sabra11G0002700 Salix brachista HOM05D002890 ORTHO05D009847 1.5e-06 58.9 210 24.8
ATR0598G005 Amborella trichopoda HOM05D008470 ORTHO05D010644 2.0e-06 58.5 202 27.7
Psat4g145840 Pisum sativum HOM05D007347 ORTHO05D009296 2.0e-06 58.5 145 24.8
Sopen04g025650 Solanum pennellii HOM05D007455 ORTHO05D009431 2.0e-06 58.5 139 22.3
PGSC0003DMG400001336 Solanum tuberosum HOM05D007455 ORTHO05D009431 2.0e-06 58.5 139 22.3
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 2.0e-06 58.5 187 23.0
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 2.6e-06 58.2 176 25.0
Prupe.6G186200 Prunus persica HOM05D007347 ORTHO05D009296 2.6e-06 58.2 138 27.5
Zm00001eb080520 Zea mays HOM05D007545 ORTHO05D009579 2.6e-06 58.2 129 26.4
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 3.4e-06 57.8 216 24.5
Medtr8g039270 Medicago truncatula HOM05D007347 ORTHO05D009296 3.4e-06 57.8 138 26.1
Ah.03g135270 Amaranthus hybridus HOM05D007390 ORTHO05D009114 4.4e-06 57.4 152 27.0
Nn1g08626 Nelumbo nucifera HOM05D007570 ORTHO05D009365 4.4e-06 57.4 77 33.8
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.7e-06 57.0 208 24.0
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 7.5e-06 56.6 239 22.6
Potri.011G003700 Populus trichocarpa HOM05D002890 ORTHO05D009847 7.5e-06 56.6 210 23.3
Dinv34879 Davidia involucrata HOM05D007347 ORTHO05D009296 9.7e-06 56.2 130 26.9
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 9.7e-06 56.2 239 22.6


User provided reference genes

Program Settings