Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01030586001 Vitis vinifera HOM05D000007 ORTHO05D000521 1.8e-167 592.4 283 100.0
Thecc.01G185500 Theobroma cacao HOM05D000007 ORTHO05D000521 6.4e-48 195.3 409 32.5
Duzib138G1457 Durio zibethinus HOM05D000007 ORTHO05D000521 1.5e-44 184.1 410 31.7
TWI75G1848 Tripterygium wilfordii HOM05D000007 ORTHO05D000521 1.1e-42 177.9 407 30.2
TWI18G1020 Tripterygium wilfordii HOM05D000007 ORTHO05D000521 4.0e-42 176.0 405 30.4
Gorai.001G194200 Gossypium raimondii HOM05D000007 ORTHO05D000521 1.2e-41 174.5 413 31.0
Gohir.A07G175934 Gossypium hirsutum HOM05D000007 ORTHO05D000521 1.5e-41 174.1 413 31.0
Gohir.D07G173800 Gossypium hirsutum HOM05D000007 ORTHO05D000521 4.5e-41 172.6 413 30.5
Potri.002G223000 Populus trichocarpa HOM05D000007 ORTHO05D000521 7.6e-41 171.8 410 30.0
Duzib133G1250 Durio zibethinus HOM05D000007 ORTHO05D000521 1.3e-40 171.0 406 31.0
Sabra02G0170100 Salix brachista HOM05D000007 ORTHO05D000521 6.4e-40 168.7 408 30.1
Gohir.D07G196000 Gossypium hirsutum HOM05D000007 ORTHO05D000521 1.1e-39 167.9 387 30.2
Gorai.001G219500 Gossypium raimondii HOM05D000007 ORTHO05D000521 2.4e-39 166.8 387 30.2
Cfa014275 Carpinus fangiana HOM05D000007 ORTHO05D000521 4.2e-39 166.0 409 29.6
Potri.014G162600 Populus trichocarpa HOM05D000007 ORTHO05D000521 3.5e-38 162.9 411 30.2
Sabra14G0124200 Salix brachista HOM05D000007 ORTHO05D000521 2.3e-37 160.2 411 29.2
CiPaw.03G276600 Carya illinoinensis HOM05D000007 ORTHO05D000521 6.7e-37 158.7 431 28.8
Manes.12G062501 Manihot esculenta HOM05D000007 ORTHO05D000521 2.5e-36 156.8 388 28.1
Manes.12G062601 Manihot esculenta HOM05D000007 ORTHO05D000521 3.3e-36 156.4 388 28.1
Haze_12720 Corylus avellana HOM05D000007 ORTHO05D000521 4.3e-36 156.0 384 29.4
Cpa.g.sc136.4 Carica papaya HOM05D000007 ORTHO05D000521 2.1e-35 153.7 416 27.9
Ciclev10015426m.g Citrus clementina HOM05D000007 ORTHO05D000521 4.8e-35 152.5 412 28.4
Dinv05357 Davidia involucrata HOM05D000007 ORTHO05D000521 4.8e-35 152.5 418 27.3
Gohir.A07G189800 Gossypium hirsutum HOM05D000007 ORTHO05D000521 4.5e-33 146.0 137 54.7
THA.LOC104819049 Tarenaya hassleriana HOM05D000007 ORTHO05D000521 1.7e-32 144.1 401 27.4
Atru.chr6.3330 Acer truncatum HOM05D000007 ORTHO05D000521 4.2e-31 139.4 393 27.2
PGR142G2144 Punica granatum HOM05D000007 ORTHO05D000521 5.5e-31 139.0 406 29.6
QL08p029353 Quercus lobata HOM05D000007 ORTHO05D000521 6.7e-29 132.1 399 27.1
A03p35500 Brassica napus HOM05D000007 ORTHO05D000521 5.6e-28 129.0 392 27.0
BraA03t12727Z Brassica rapa HOM05D000007 ORTHO05D000521 5.6e-28 129.0 392 27.0
AL3G19240 Arabidopsis lyrata HOM05D000007 ORTHO05D000521 9.6e-28 128.3 419 26.3
C03p43160 Brassica napus HOM05D000007 ORTHO05D000521 1.3e-27 127.9 408 27.0
BolC3t16585H Brassica oleracea HOM05D000007 ORTHO05D000521 1.3e-27 127.9 408 27.0
CSS0023358 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 1.3e-27 127.9 124 47.6
CSS0036134 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 1.3e-27 127.9 124 47.6
Carub.0003s0745 Capsella rubella HOM05D000007 ORTHO05D000521 1.6e-27 127.5 402 26.6
CiPaw.04G111100 Carya illinoinensis HOM05D000007 ORTHO05D000521 1.6e-27 127.5 304 31.9
Eucgr.K00668 Eucalyptus grandis HOM05D000007 ORTHO05D000521 1.6e-27 127.5 132 48.5
Thhalv10020831m.g Eutrema salsugineum HOM05D000007 ORTHO05D000521 2.8e-27 126.7 387 25.8
COL.COLO4_06939 Corchorus olitorius HOM05D000007 ORTHO05D000521 4.8e-27 125.9 85 65.9
CARHR082600 Cardamine hirsuta HOM05D000007 ORTHO05D000521 1.1e-26 124.8 405 25.9
AT3G07870 Arabidopsis thaliana HOM05D000007 ORTHO05D000521 1.8e-26 124.0 403 26.6
Ciclev10017685m.g Citrus clementina HOM05D000007 ORTHO05D000521 6.9e-26 122.1 372 27.7
Sp3g06790 Schrenkiella parvula HOM05D000007 ORTHO05D000521 4.5e-25 119.4 396 26.3
Hma1.2p1_1532F.1_g289300 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 7.6e-25 118.6 407 25.8
CSS0017623 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 2.9e-24 116.7 124 48.4
CSS0044231 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 2.9e-24 116.7 124 48.4
ECA236G3121 Erigeron canadensis HOM05D000007 ORTHO05D000521 2.9e-24 116.7 98 51.0
ClCG02G009480 Citrullus lanatus HOM05D000007 ORTHO05D000521 1.9e-23 114.0 385 25.5
CANSAT80G1792 Cannabis sativa HOM05D000007 ORTHO05D000521 3.2e-23 113.2 128 44.5
DCAR_019702 Daucus carota HOM05D000007 ORTHO05D000521 3.2e-23 113.2 122 46.7
Sed0022248 Sechium edule HOM05D000007 ORTHO05D000521 5.5e-23 112.5 376 26.1
Ciclev10018322m.g Citrus clementina HOM05D000007 ORTHO05D000521 9.3e-23 111.7 254 31.5
Lsat_1_v5_gn_7_95360 Lactuca sativa HOM05D000007 ORTHO05D000521 9.3e-23 111.7 109 48.6
Hma1.2p1_1532F.1_g289320 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 2.1e-22 110.5 124 46.0
Hma1.2p1_2053F.1_g312720 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 2.1e-22 110.5 124 46.0
CiPaw.04G194400 Carya illinoinensis HOM05D000007 ORTHO05D000521 2.7e-22 110.2 98 51.0
Lsat_1_v5_gn_5_121721 Lactuca sativa HOM05D000007 ORTHO05D000521 7.9e-22 108.6 378 25.4
MELO3C019366.2 Cucumis melo HOM05D000007 ORTHO05D000521 1.3e-21 107.8 379 25.3
TWI36G0953 Tripterygium wilfordii HOM05D000007 ORTHO05D000521 1.3e-21 107.8 98 51.0
ECA234G0135 Erigeron canadensis HOM05D000007 ORTHO05D000521 1.8e-21 107.5 371 25.9
Nitab4.5_0003611g0030 Nicotiana tabacum HOM05D000007 ORTHO05D000521 6.7e-21 105.5 103 46.6
Cc11_g00570 Coffea canephora HOM05D000007 ORTHO05D000521 1.9e-20 104.0 105 46.7
Peaxi162Scf00776g00029 Petunia axillaris HOM05D000007 ORTHO05D000521 1.9e-20 104.0 105 45.7
DCAR_019703 Daucus carota HOM05D000007 ORTHO05D000521 2.5e-20 103.6 125 44.0
MD09G1119500 Malus domestica HOM05D000007 ORTHO05D000521 4.3e-20 102.8 131 45.0
Nitab4.5_0011068g0020 Nicotiana tabacum HOM05D000007 ORTHO05D000521 5.7e-20 102.4 95 47.4
CSS0006145 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 7.4e-20 102.1 398 22.6
Prupe.3G204700 Prunus persica HOM05D000007 ORTHO05D000521 9.7e-20 101.7 241 33.2
DCAR_019704 Daucus carota HOM05D000007 ORTHO05D000521 1.3e-19 101.3 120 46.7
CAN.G294.22 Capsicum annuum HOM05D000007 ORTHO05D000521 2.2e-19 100.5 112 41.1
CsaV3_6G009350 Cucumis sativus L. HOM05D000007 ORTHO05D000521 2.8e-19 100.1 379 25.1
Nitab4.5_0004124g0020 Nicotiana tabacum HOM05D000007 ORTHO05D000521 4.8e-19 99.4 119 40.3
Migut.M00038 Erythranthe guttata HOM05D000007 ORTHO05D000521 6.3e-19 99.0 125 42.4
Nitab4.5_0001774g0020 Nicotiana tabacum HOM05D000007 ORTHO05D000521 6.3e-19 99.0 104 43.3
Cpa.g.sc136.5 Carica papaya HOM05D000007 ORTHO05D000521 8.2e-19 98.6 125 40.0
Manes.13G063819 Manihot esculenta HOM05D000007 ORTHO05D000521 1.1e-18 98.2 93 49.5
Prupe.6G145000 Prunus persica HOM05D000007 ORTHO05D000521 4.1e-18 96.3 321 26.2
Cc11_g00560 Coffea canephora HOM05D000007 ORTHO05D000521 5.3e-18 95.9 124 37.9
Peaxi162Scf00776g00005 Petunia axillaris HOM05D000007 ORTHO05D000521 6.9e-18 95.5 105 40.0
Solyc12g006130.3 Solanum lycopersicum HOM05D000007 ORTHO05D000521 6.9e-18 95.5 383 25.6
CAN.G1036.9 Capsicum annuum HOM05D000007 ORTHO05D000521 9.0e-18 95.1 95 44.2
CiPaw.03G156100 Carya illinoinensis HOM05D000007 ORTHO05D000521 1.2e-17 94.7 348 24.7
Nitab4.5_0001701g0030 Nicotiana tabacum HOM05D000007 ORTHO05D000521 1.5e-17 94.4 100 41.0
FAN14G1926 Fragaria x ananassa HOM05D003285 ORTHO05D000521 2.0e-17 94.0 127 44.1
TWI18G1173 Tripterygium wilfordii HOM05D000007 ORTHO05D000521 2.6e-17 93.6 98 41.8
Dinv18840 Davidia involucrata HOM05D000007 ORTHO05D000521 4.5e-17 92.8 349 25.5
Oeu046878.1 Olea europaea HOM05D000007 ORTHO05D000521 5.9e-17 92.4 72 51.4
Oeu063630.1 Olea europaea HOM05D000007 ORTHO05D000521 5.9e-17 92.4 106 44.3
Potri.013G053301 Populus trichocarpa HOM05D000007 ORTHO05D000521 7.7e-17 92.0 354 26.6
PGSC0003DMG400004294 Solanum tuberosum HOM05D000007 ORTHO05D000521 7.7e-17 92.0 95 45.3
TWI36G0868 Tripterygium wilfordii HOM05D000007 ORTHO05D000521 7.7e-17 92.0 100 46.0
Duzib138G0537 Durio zibethinus HOM05D000007 ORTHO05D000521 1.3e-16 91.3 87 46.0
Duzib211G0565 Durio zibethinus HOM05D000007 ORTHO05D000521 1.3e-16 91.3 89 48.3
Thecc.01G185300 Theobroma cacao HOM05D000007 ORTHO05D000521 1.3e-16 91.3 86 48.8
Thecc.01G185200 Theobroma cacao HOM05D000007 ORTHO05D000521 1.7e-16 90.9 98 44.9
Peaxi162Scf00147g01821 Petunia axillaris HOM05D000007 ORTHO05D000521 2.2e-16 90.5 311 25.7
TWI18G1015 Tripterygium wilfordii HOM05D000007 ORTHO05D000521 2.2e-16 90.5 112 42.0
Ciclev10028624m.g Citrus clementina HOM05D000007 ORTHO05D000521 3.8e-16 89.7 100 45.0
Gorai.007G168400 Gossypium raimondii HOM05D000007 ORTHO05D000521 5.0e-16 89.4 301 26.6
Duzib211G0499 Durio zibethinus HOM05D000007 ORTHO05D000521 6.5e-16 89.0 89 44.9
Duzib138G1758 Durio zibethinus HOM05D000007 ORTHO05D000521 2.5e-15 87.0 57 61.4
FAN09G4687 Fragaria x ananassa HOM05D000007 ORTHO05D000521 3.2e-15 86.7 99 49.5
Nitab4.5_0005511g0050 Nicotiana tabacum HOM05D000007 ORTHO05D000521 5.5e-15 85.9 57 63.2
COL.COLO4_25856 Corchorus olitorius HOM05D000007 ORTHO05D000521 9.4e-15 85.1 90 44.4
Aa31LG5G18430 Aethionema arabicum HOM05D001152 ORTHO05D000967 1.6e-14 84.3 99 42.4
CiPaw.03G156000 Carya illinoinensis HOM05D000007 ORTHO05D000521 1.6e-14 84.3 105 40.0
Duzib138G1831 Durio zibethinus HOM05D000007 ORTHO05D000521 2.1e-14 84.0 57 61.4
Atru.chr3.3109 Acer truncatum HOM05D000007 ORTHO05D000521 4.6e-14 82.8 70 52.9
DCAR_023673 Daucus carota HOM05D000007 ORTHO05D000521 4.6e-14 82.8 105 42.9
Gohir.A11G151150 Gossypium hirsutum HOM05D000007 ORTHO05D000521 1.8e-13 80.9 95 45.3
Gohir.D11G157600 Gossypium hirsutum HOM05D000007 ORTHO05D000521 1.8e-13 80.9 92 43.5
Oeu063628.1 Olea europaea HOM05D000007 ORTHO05D000521 2.3e-13 80.5 74 47.3
Nitab4.5_0003611g0110 Nicotiana tabacum HOM05D000007 ORTHO05D000521 3.0e-13 80.1 103 39.8
COL.COLO4_25857 Corchorus olitorius HOM05D000007 ORTHO05D000521 3.9e-13 79.7 87 42.5
COL.COLO4_25859 Corchorus olitorius HOM05D000007 ORTHO05D000521 5.1e-13 79.3 88 43.2
DCAR_023672 Daucus carota HOM05D000007 ORTHO05D000521 5.1e-13 79.3 69 53.6
Gohir.A11G150700 Gossypium hirsutum HOM05D000007 ORTHO05D000521 5.1e-13 79.3 55 58.2
Gohir.D11G157200 Gossypium hirsutum HOM05D000007 ORTHO05D000521 5.1e-13 79.3 55 58.2
Gohir.D11G157900 Gossypium hirsutum HOM05D000007 ORTHO05D000521 5.1e-13 79.3 95 44.2
Gorai.007G167700 Gossypium raimondii HOM05D000007 ORTHO05D000521 5.1e-13 79.3 55 58.2
Manes.12G062600 Manihot esculenta HOM05D000007 ORTHO05D000521 6.7e-13 79.0 100 40.0
Peaxi162Scf00047g02115 Petunia axillaris HOM05D000007 ORTHO05D000521 6.7e-13 79.0 214 29.9
Gorai.007G168100 Gossypium raimondii HOM05D000007 ORTHO05D000521 8.8e-13 78.6 92 42.4
Dinv18842 Davidia involucrata HOM05D000271 ORTHO05D000742 1.1e-12 78.2 71 52.1
Sopen12g002090 Solanum pennellii HOM05D000007 ORTHO05D000521 1.1e-12 78.2 56 62.5
DCAR_019237 Daucus carota HOM05D000007 ORTHO05D000521 2.0e-12 77.4 79 45.6
Atru.chr2.792 Acer truncatum HOM05D000007 ORTHO05D000521 2.5e-12 77.0 56 60.7
Manes.12G062634 Manihot esculenta HOM05D000007 ORTHO05D000521 2.5e-12 77.0 100 39.0
Duzib138G1139 Durio zibethinus HOM05D000007 ORTHO05D000521 3.3e-12 76.6 57 50.9
Gohir.A11G150800 Gossypium hirsutum HOM05D000007 ORTHO05D000521 3.3e-12 76.6 55 56.4
Gorai.007G167800 Gossypium raimondii HOM05D000007 ORTHO05D000521 3.3e-12 76.6 55 56.4
PGSC0003DMG402004300 Solanum tuberosum HOM05D000007 ORTHO05D000521 3.3e-12 76.6 56 57.1
Duzib138G0431 Durio zibethinus HOM05D000007 ORTHO05D000521 5.7e-12 75.9 85 47.1
COL.COLO4_25855 Corchorus olitorius HOM05D000007 ORTHO05D000521 4.8e-11 72.8 57 56.1
RcHm_v2.0_Chr7g0213431 Rosa chinensis HOM05D000007 ORTHO05D000521 4.8e-11 72.8 73 50.7
Thecc.01G188100 Theobroma cacao HOM05D000007 ORTHO05D000521 6.3e-11 72.4 57 52.6
Gohir.A11G151000 Gossypium hirsutum HOM05D000007 ORTHO05D000521 8.2e-11 72.0 91 36.3
Gohir.D11G157300 Gossypium hirsutum HOM05D000007 ORTHO05D000521 1.4e-10 71.2 55 54.5
Gohir.D11G157800 Gossypium hirsutum HOM05D000007 ORTHO05D000521 1.4e-10 71.2 91 41.8
Gorai.007G168300 Gossypium raimondii HOM05D000007 ORTHO05D000521 1.8e-10 70.9 91 41.8
COL.COLO4_25431 Corchorus olitorius HOM05D000007 ORTHO05D000521 2.4e-10 70.5 66 48.5
COL.COLO4_25854 Corchorus olitorius HOM05D000007 ORTHO05D000521 2.4e-10 70.5 86 38.4
Nitab4.5_0013668g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000521 4.1e-10 69.7 96 39.6
Manes.17G022301 Manihot esculenta HOM05D000007 ORTHO05D000521 5.3e-10 69.3 101 34.7
Actinidia07877 Actinidia chinensis HOM05D000007 ORTHO05D000521 6.9e-10 68.9 66 48.5
COL.COLO4_25853 Corchorus olitorius HOM05D000007 ORTHO05D000521 6.9e-10 68.9 57 47.4
Gohir.A11G151100 Gossypium hirsutum HOM05D000007 ORTHO05D000521 6.9e-10 68.9 91 41.8
Eucgr.A01070 Eucalyptus grandis HOM05D000007 ORTHO05D000521 9.1e-10 68.6 82 42.7
Sabra14G0042100 Salix brachista HOM05D000007 ORTHO05D000521 9.1e-10 68.6 48 62.5
Gohir.D11G157700 Gossypium hirsutum HOM05D000007 ORTHO05D000521 1.2e-09 68.2 91 35.2
TAR624G0469 Trochodendron aralioides HOM05D000007 ORTHO05D000521 1.5e-09 67.8 119 37.0
CANSAT78G0496 Cannabis sativa HOM05D000007 ORTHO05D000521 2.6e-09 67.0 85 42.4
Peaxi162Scf00047g02114 Petunia axillaris HOM05D000007 ORTHO05D000521 2.6e-09 67.0 48 60.4
CANSAT78G1757 Cannabis sativa HOM05D000007 ORTHO05D000521 3.4e-09 66.6 85 42.4
Lj1C663T3 Lonicera japonica HOM05D000007 ORTHO05D000039 3.4e-09 66.6 102 36.3
COL.COLO4_20026 Corchorus olitorius HOM05D000007 ORTHO05D000521 7.7e-09 65.5 58 48.3
COL.COLO4_25849 Corchorus olitorius HOM05D000007 ORTHO05D000521 7.7e-09 65.5 58 48.3
Gorai.007G168200 Gossypium raimondii HOM05D000007 ORTHO05D000521 7.7e-09 65.5 91 34.1
CANSAT78G1762 Cannabis sativa HOM05D000007 ORTHO05D000521 1.0e-08 65.1 85 41.2
Dinv05849 Davidia involucrata HOM05D000007 ORTHO05D000521 8.5e-08 62.0 54 46.3
Eucgr.A01071 Eucalyptus grandis HOM05D000007 ORTHO05D000521 8.5e-08 62.0 64 50.0
Hma1.2p1_0405F.1_g145650 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 1.1e-07 61.6 54 48.1
Cpa.g.sc83.30 Carica papaya HOM05D000007 ORTHO05D000017 1.4e-07 61.2 83 44.6
Nn1g02068 Nelumbo nucifera HOM05D000007 ORTHO05D000017 1.4e-07 61.2 66 47.0
Lj1C663T4 Lonicera japonica HOM05D000007 ORTHO05D000039 4.2e-07 59.7 96 33.3
DCAR_001764 Daucus carota HOM05D000007 ORTHO05D000521 5.5e-07 59.3 100 34.0
FAN02G3500 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.5e-07 59.3 123 33.3
Peaxi162Scf00211g00151 Petunia axillaris HOM05D000007 ORTHO05D020324 7.2e-07 58.9 59 44.1
Nitab4.5_0013025g0020 Nicotiana tabacum HOM05D000007 ORTHO05D000521 9.4e-07 58.5 46 56.5
Sed0020962 Sechium edule HOM05D000007 ORTHO05D000039 9.4e-07 58.5 252 22.2
Eucgr.I00164 Eucalyptus grandis HOM05D000007 ORTHO05D000039 1.6e-06 57.8 100 36.0
Lj3P969T40 Lonicera japonica HOM05D000007 ORTHO05D000017 2.1e-06 57.4 86 33.7
Potri.001G318300 Populus trichocarpa HOM05D000007 ORTHO05D000017 2.7e-06 57.0 98 34.7
HanXRQChr10g0295591 Helianthus annuus HOM05D000007 ORTHO05D000521 3.6e-06 56.6 82 35.4
QL04p037119 Quercus lobata HOM05D000007 ORTHO05D000039 3.6e-06 56.6 184 28.8
Prupe.3G191300 Prunus persica HOM05D000007 ORTHO05D000017 4.7e-06 56.2 44 59.1
CiPaw.07G037900 Carya illinoinensis HOM05D000007 ORTHO05D000017 6.1e-06 55.8 88 37.5
RcHm_v2.0_Chr7g0203691 Rosa chinensis HOM05D000007 ORTHO05D000017 6.1e-06 55.8 99 36.4
PGSC0003DMG401004300 Solanum tuberosum HOM05D000007 ORTHO05D000521 6.1e-06 55.8 105 31.4
TAR626G0319 Trochodendron aralioides HOM05D000007 ORTHO05D000017 6.1e-06 55.8 58 48.3
CSS0034442 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 7.9e-06 55.5 79 35.4
Ciclev10011634m.g Citrus clementina HOM05D000007 ORTHO05D000521 7.9e-06 55.5 80 37.5
Glyma.16G163966 Glycine max HOM05D000007 ORTHO05D000017 7.9e-06 55.5 124 28.2
HanXRQChr03g0074881 Helianthus annuus HOM05D000007 ORTHO05D000521 7.9e-06 55.5 60 41.7


User provided reference genes

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