Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 0.0e+00 1151.7 566 100.0
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 2.5e-269 931.8 567 77.1
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 6.2e-268 927.2 565 78.1
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 2.6e-266 921.8 563 78.2
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 3.7e-265 917.9 563 77.6
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 1.9e-264 915.6 563 76.4
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 3.2e-264 914.8 563 76.2
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 1.2e-263 912.9 563 76.2
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 1.3e-262 909.4 563 76.6
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 1.7e-262 909.1 562 76.0
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 5.1e-262 907.5 567 75.3
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 4.0e-259 897.9 560 76.6
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 6.8e-259 897.1 564 75.9
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 8.9e-259 896.7 568 75.2
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 1.5e-258 896.0 562 75.1
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 2.1e-255 885.6 562 74.6
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 1.0e-254 883.2 564 73.8
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.3e-254 882.1 564 74.8
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 3.0e-254 881.7 585 71.8
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 4.3e-253 877.9 523 79.5
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.3e-253 877.9 562 73.8
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 6.2e-252 874.0 565 74.0
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 1.2e-250 869.8 562 72.8
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.2e-249 865.5 564 73.2
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 2.9e-249 865.1 564 71.5
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 4.9e-249 864.4 600 69.8
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 2.4e-248 862.1 566 73.0
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 4.2e-248 861.3 558 72.9
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 1.2e-247 859.8 564 71.3
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 3.5e-247 858.2 561 72.4
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 1.3e-246 856.3 564 71.6
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.7e-246 855.9 613 67.7
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 2.3e-246 855.5 565 72.4
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 3.3e-245 851.7 564 72.5
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 7.3e-245 850.5 541 74.1
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 2.1e-244 849.0 562 72.4
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 4.0e-243 844.7 558 71.7
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 5.8e-242 840.9 558 71.1
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 9.9e-242 840.1 559 70.8
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 1.3e-241 839.7 558 71.3
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 4.9e-241 837.8 558 71.0
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 1.9e-240 835.9 558 71.0
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 1.1e-237 826.6 562 70.1
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 3.7e-236 821.6 569 70.3
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 3.8e-233 811.6 571 70.4
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 6.5e-233 810.8 568 67.6
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 1.1e-232 810.1 568 67.3
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 3.2e-232 808.5 566 67.1
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 7.1e-232 807.4 523 72.3
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 9.3e-232 807.0 567 69.1
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.0e-230 803.5 565 70.1
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 2.5e-229 798.9 562 68.3
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 2.5e-229 798.9 523 71.7
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 7.4e-229 797.3 525 72.8
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 2.8e-228 795.4 561 68.1
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 1.4e-227 793.1 561 68.6
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 4.1e-227 791.6 558 67.4
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 2.0e-226 789.3 569 66.1
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 2.0e-226 789.3 562 67.1
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 2.2e-225 785.8 561 66.5
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 4.2e-224 781.6 565 66.4
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 5.5e-224 781.2 561 66.7
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 3.5e-223 778.5 565 66.2
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 6.3e-220 767.7 562 64.6
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 1.4e-219 766.5 562 66.4
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 1.4e-216 756.5 503 69.8
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 5.5e-216 754.6 560 65.4
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 1.4e-211 740.0 521 67.2
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 1.8e-211 739.6 456 77.9
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 4.1e-211 738.4 526 68.1
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 9.1e-211 737.3 525 68.0
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 2.6e-210 735.7 558 64.5
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 3.8e-209 731.9 457 76.6
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 1.6e-207 726.5 589 62.1
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 6.1e-207 724.5 456 75.2
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 2.3e-206 722.6 526 66.0
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 2.4e-203 712.6 538 66.2
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 2.4e-203 712.6 559 61.5
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 3.1e-195 685.6 478 69.9
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 7.0e-195 684.5 491 68.6
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 3.7e-188 662.1 683 51.8
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 3.4e-181 639.0 562 56.2
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 4.5e-178 628.6 589 54.5
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 1.3e-177 627.1 565 56.1
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 6.1e-175 618.2 595 54.3
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 7.8e-170 601.3 526 57.4
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 7.8e-170 601.3 480 62.5
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 2.8e-167 592.8 526 56.8
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 7.5e-165 584.7 530 55.3
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 2.5e-152 543.1 401 64.6
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 1.3e-129 467.6 304 70.1
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 3.6e-127 459.5 314 69.1
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 2.2e-124 450.3 319 70.8
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 1.1e-120 438.0 284 70.4
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 5.6e-120 435.6 709 37.1
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 1.2e-117 427.9 321 65.1
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 2.5e-115 420.2 339 60.2
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 3.2e-115 419.9 593 40.1
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 1.9e-104 384.0 583 36.5
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 9.7e-104 381.7 259 68.0
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 8.2e-103 378.6 266 68.8
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 6.7e-97 359.0 248 69.4
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 2.5e-91 340.5 268 62.3
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 1.6e-90 337.8 262 64.5
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 5.5e-83 312.8 206 68.9
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 7.2e-83 312.4 244 59.8
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 1.5e-64 251.5 211 55.0
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 2.2e-63 247.7 164 69.5
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 4.1e-62 243.4 157 74.5
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 5.9e-61 239.6 140 75.0
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 1.7e-60 238.0 203 59.6
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 4.3e-59 233.4 691 27.5
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 2.0e-53 214.5 185 56.8
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 3.1e-49 200.7 170 60.6
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.9e-46 191.4 142 66.9
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 6.2e-42 176.4 168 56.5
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 4.7e-34 150.2 84 85.7
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 2.3e-33 147.9 93 67.7
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 2.3e-28 131.3 148 49.3
CDE04G2645 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 9.9e-24 115.9 115 51.3
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 4.0e-17 94.0 49 85.7
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 3.8e-15 87.4 84 53.6
Lsat_1_v5_gn_1_125520 Lactuca sativa HOM05D006190 ORTHO05D008260 2.5e-11 74.7 64 53.1
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 2.4e-09 68.2 58 58.6
BcaB01g04050 Brassica carinata HOM05D006190 ORTHO05D008260 1.1e-06 59.3 61 50.8
Rhsim04G0034300 Rhododendron simsii HOM05D001260 ORTHO05D004134 5.5e-06 57.0 37 70.3
Psat5g200440 Pisum sativum HOM05D000228 ORTHO05D001545 7.1e-06 56.6 61 45.9


User provided reference genes

Program Settings