Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 1.6e-251 872.5 515 100.0
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 5.0e-115 419.1 513 48.5
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 8.5e-115 418.3 513 48.5
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 3.7e-110 402.9 511 46.6
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 5.9e-108 395.6 508 47.0
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.8e-104 384.0 513 45.4
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 7.7e-100 368.6 510 44.1
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 8.5e-99 365.2 515 44.7
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 3.2e-98 363.2 514 44.2
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 2.7e-97 360.1 513 43.9
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.7e-94 350.9 513 42.9
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 5.5e-90 335.9 532 40.2
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 2.8e-86 323.6 456 43.6
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 3.7e-86 323.2 453 42.8
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 1.7e-83 314.3 513 40.7
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 2.9e-83 313.5 512 39.8
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 4.7e-81 306.2 531 40.3
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 1.4e-80 304.7 513 39.4
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 3.2e-77 293.5 654 34.4
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 5.4e-77 292.7 341 46.9
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 1.6e-76 291.2 301 49.5
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.6e-76 291.2 640 34.7
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.3e-75 288.1 654 34.4
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 2.9e-75 287.0 510 42.2
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 5.6e-74 282.7 535 39.6
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 5.2e-72 276.2 594 33.8
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 6.8e-72 275.8 514 37.4
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 5.8e-71 272.7 520 40.8
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 1.7e-70 271.2 510 39.6
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 4.9e-70 269.6 511 38.4
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 5.4e-69 266.2 324 45.7
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.0e-67 260.4 642 32.4
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 3.0e-67 260.4 604 39.4
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 3.9e-67 260.0 325 45.8
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.9e-67 260.0 642 32.6
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.9e-67 260.0 642 32.2
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 3.3e-66 256.9 353 44.8
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 2.1e-65 254.2 642 32.1
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 2.1e-65 254.2 323 43.7
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.6e-65 253.4 642 32.1
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 8.1e-65 252.3 528 37.3
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 4.0e-64 250.0 327 43.1
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 5.2e-64 249.6 329 41.6
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 8.9e-64 248.8 591 38.1
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 1.2e-63 248.4 325 43.4
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 1.5e-63 248.1 335 43.9
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 2.6e-63 247.3 324 43.5
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 9.8e-63 245.4 591 37.9
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 9.8e-63 245.4 592 37.8
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 3.7e-62 243.4 341 44.9
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 3.7e-62 243.4 325 43.4
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.1e-61 241.9 316 44.6
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 7.1e-61 239.2 475 34.9
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 4.6e-60 236.5 337 44.5
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 2.5e-58 230.7 544 31.6
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 7.3e-58 229.2 322 42.2
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 1.2e-57 228.4 578 34.8
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 2.1e-57 227.6 274 47.4
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 2.3e-56 224.2 236 50.0
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 3.1e-56 223.8 301 45.5
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 3.1e-56 223.8 280 44.3
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 4.0e-56 223.4 301 45.5
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.0e-56 223.4 624 34.1
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 6.8e-56 222.6 378 36.2
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 2.6e-55 220.7 356 39.0
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 2.9e-54 217.2 336 40.5
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 1.6e-52 211.5 531 32.2
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 4.6e-52 209.9 404 34.7
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 6.0e-52 209.5 326 39.0
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 6.0e-52 209.5 273 43.6
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 3.9e-51 206.8 311 41.8
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 3.9e-51 206.8 237 45.6
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 1.1e-50 205.3 531 32.4
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.5e-50 204.9 332 40.1
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.1e-48 198.7 581 32.9
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 1.8e-48 198.0 360 36.9
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 1.8e-48 198.0 322 40.7
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 2.9e-46 190.7 526 31.9
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 2.1e-44 184.5 321 40.5
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 6.0e-44 183.0 683 26.2
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.3e-43 181.8 333 33.6
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 3.3e-42 177.2 607 30.8
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 3.1e-40 170.6 653 26.2
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 3.1e-40 170.6 311 37.9
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 9.0e-40 169.1 436 30.5
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.5e-39 168.3 275 39.6
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 2.6e-39 167.5 311 37.0
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 5.8e-39 166.4 316 36.1
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 7.6e-39 166.0 309 38.2
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 4.9e-38 163.3 466 26.8
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 8.4e-38 162.5 668 26.6
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 1.4e-37 161.8 335 34.9
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.4e-37 161.8 349 31.5
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 3.2e-37 160.6 687 25.5
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 7.1e-37 159.5 242 40.5
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 7.1e-37 159.5 668 26.5
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 7.1e-37 159.5 423 28.4
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 1.2e-36 158.7 687 25.8
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 1.2e-36 158.7 699 25.6
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 3.5e-36 157.1 470 26.8
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 7.9e-36 156.0 253 38.3
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 1.0e-35 155.6 327 32.7
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 8.7e-35 152.5 709 24.8
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 4.3e-34 150.2 293 37.9
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 4.8e-33 146.7 263 36.9
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 8.1e-33 146.0 683 24.7
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 2.4e-32 144.4 699 24.3
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 2.6e-31 141.0 690 24.1
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 4.5e-31 140.2 688 24.1
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 9.9e-31 139.0 148 48.6
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 8.4e-30 136.0 323 34.7
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 5.4e-29 133.3 688 24.0
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.6e-28 131.7 522 26.6
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 2.3e-27 127.9 107 53.3
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 4.0e-24 117.1 218 37.2
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 2.6e-23 114.4 179 38.0
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 7.1e-21 106.3 714 23.0
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 3.5e-20 104.0 185 36.2
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.3e-19 101.3 379 29.6
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.3e-19 101.3 379 29.6
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 1.1e-18 99.0 104 50.0
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 5.7e-18 96.7 518 35.7
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 2.6e-15 87.8 110 43.6
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 2.2e-14 84.7 102 44.1
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 1.2e-12 79.0 113 46.9
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 3.5e-12 77.4 94 40.4
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 6.1e-12 76.6 103 41.7
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.9e-10 71.6 357 24.1
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 9.7e-10 69.3 357 23.8
ATR0580G041 Amborella trichopoda HOM05D005385 ORTHO05D006768 3.4e-07 60.8 155 31.6


User provided reference genes

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