Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 4.9e-169 597.8 311 100.0
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 6.1e-79 298.5 339 52.8
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 6.3e-76 288.5 335 54.3
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 8.6e-57 224.9 387 42.1
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 3.6e-55 219.5 341 46.3
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 8.0e-55 218.4 388 43.3
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 5.8e-53 212.2 239 53.1
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 2.9e-52 209.9 318 46.5
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 6.4e-52 208.8 329 43.2
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 6.4e-52 208.8 320 46.2
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 1.9e-51 207.2 344 43.6
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 2.4e-51 206.8 218 56.4
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 6.0e-50 202.2 383 41.0
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 1.7e-49 200.7 349 41.5
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 2.3e-49 200.3 237 50.2
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 3.0e-49 199.9 383 41.0
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 5.0e-49 199.1 318 44.0
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 5.6e-48 195.7 330 39.7
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 9.5e-48 194.9 329 41.0
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 4.7e-47 192.6 341 40.5
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 6.2e-47 192.2 383 39.9
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.1e-46 191.4 259 45.2
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.1e-46 189.9 268 43.3
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 3.4e-45 186.4 217 48.8
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 3.7e-44 183.0 343 38.5
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 3.7e-44 183.0 234 47.9
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.4e-43 181.0 179 56.4
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 2.4e-43 180.3 340 41.2
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.7e-42 176.8 389 37.5
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 3.5e-42 176.4 421 36.3
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 4.6e-42 176.0 264 43.2
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 7.8e-42 175.3 264 42.8
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 1.0e-41 174.9 340 38.5
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.3e-41 174.5 389 38.6
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 2.3e-41 173.7 264 42.4
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 3.9e-41 172.9 239 47.7
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 6.6e-41 172.2 407 36.4
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 2.5e-40 170.2 324 38.0
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 2.5e-40 170.2 392 37.0
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 4.3e-40 169.5 219 46.1
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 4.3e-40 169.5 314 38.9
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 9.5e-40 168.3 254 42.9
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.1e-39 167.2 282 41.5
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.1e-39 167.2 299 43.1
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 2.8e-39 166.8 254 42.5
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 3.6e-39 166.4 351 34.8
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 4.7e-39 166.0 326 38.3
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.1e-39 165.2 266 43.2
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.1e-39 165.2 266 43.2
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.1e-39 165.2 266 43.2
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 1.4e-38 164.5 214 47.7
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 4.0e-38 162.9 354 39.5
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 5.2e-38 162.5 176 54.5
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 8.9e-38 161.8 360 36.4
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 3.4e-37 159.8 377 36.1
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.4e-37 159.8 346 35.5
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 4.4e-37 159.5 532 30.6
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 9.9e-37 158.3 207 50.2
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 9.9e-37 158.3 291 41.2
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 1.3e-36 157.9 357 34.7
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.7e-36 157.5 178 51.7
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 1.7e-36 157.5 336 37.8
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 3.7e-36 156.4 281 39.5
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 3.7e-36 156.4 332 38.0
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.9e-35 154.1 292 34.9
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 5.4e-35 152.5 263 41.4
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 9.2e-35 151.8 303 38.3
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 1.6e-34 151.0 426 31.9
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.7e-34 150.2 317 36.6
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 1.0e-33 148.3 324 37.7
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 2.3e-33 147.1 235 41.7
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 6.6e-33 145.6 231 43.3
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 8.6e-33 145.2 227 44.5
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 8.6e-33 145.2 242 41.3
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 1.9e-32 144.1 209 43.1
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 1.9e-32 144.1 293 36.9
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 5.6e-32 142.5 376 33.2
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 9.6e-32 141.7 178 51.7
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 1.6e-31 141.0 324 37.0
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 8.1e-31 138.7 126 58.7
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 1.1e-30 138.3 262 39.7
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 1.1e-30 138.3 133 54.9
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 1.1e-30 138.3 415 31.6
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 4.0e-30 136.3 327 32.1
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 6.8e-30 135.6 284 40.5
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 6.8e-30 135.6 202 43.6
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 1.2e-29 134.8 382 33.2
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.2e-29 134.8 255 38.8
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 5.8e-29 132.5 327 32.4
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.7e-28 131.0 239 41.0
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 1.7e-28 131.0 180 45.6
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.7e-28 131.0 214 38.3
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 2.9e-28 130.2 179 46.9
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 8.4e-28 128.6 245 39.2
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 1.4e-27 127.9 210 45.2
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 2.4e-27 127.1 377 32.6
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 5.4e-27 125.9 184 45.7
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 7.1e-27 125.6 210 39.5
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 9.3e-27 125.2 114 62.3
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.6e-26 124.4 183 47.5
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 2.1e-26 124.0 320 33.1
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 2.7e-26 123.6 134 56.0
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 3.5e-26 123.2 338 31.1
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 6.0e-26 122.5 300 32.3
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 6.0e-26 122.5 287 36.9
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 6.0e-26 122.5 285 33.0
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 7.8e-26 122.1 207 40.6
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 1.0e-25 121.7 331 34.1
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 1.3e-25 121.3 298 36.6
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 1.3e-25 121.3 289 36.0
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 1.7e-25 120.9 290 36.2
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.3e-25 120.6 184 47.3
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 3.0e-25 120.2 308 35.1
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 3.9e-25 119.8 282 34.4
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 5.1e-25 119.4 235 36.2
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 8.7e-25 118.6 285 36.1
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 1.1e-24 118.2 211 36.0
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 2.5e-24 117.1 160 41.2
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 4.3e-24 116.3 213 39.0
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 4.3e-24 116.3 209 34.9
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.3e-23 114.8 205 38.5
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 1.6e-23 114.4 201 37.3
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 3.6e-23 113.2 206 35.0
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 6.2e-23 112.5 322 33.2
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 8.1e-23 112.1 202 38.6
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 4.0e-22 109.8 337 29.4
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 6.9e-22 109.0 218 35.8
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 3.4e-21 106.7 173 39.9
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.3e-20 104.8 195 38.5
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 1.3e-20 104.8 278 32.4
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 1.7e-20 104.4 188 38.3
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 2.9e-20 103.6 169 37.9
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 3.8e-20 103.2 229 35.8
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 6.4e-20 102.4 321 30.5
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 6.4e-20 102.4 353 29.2
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 1.9e-19 100.9 210 36.7
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 2.7e-18 97.1 95 58.9
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 1.5e-16 91.3 171 36.8
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 3.3e-16 90.1 108 51.9
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 1.6e-15 87.8 312 31.7
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 2.8e-15 87.0 261 30.7
Nn2g10296 Nelumbo nucifera HOM05D003589 ORTHO05D005170 4.8e-15 86.3 186 34.9
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.4e-14 84.0 193 32.6
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.0e-14 83.2 193 33.7
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 4.0e-14 83.2 193 34.2
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 1.2e-13 81.6 250 32.4
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 1.5e-13 81.3 312 30.1
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 2.6e-13 80.5 259 25.9
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 2.6e-13 80.5 197 39.1
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 9.9e-13 78.6 224 29.0
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 2.9e-12 77.0 207 30.0
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 2.9e-12 77.0 245 31.8
Oeu057996.1 Olea europaea HOM05D003589 ORTHO05D005170 4.9e-12 76.3 208 31.7
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 4.2e-11 73.2 309 25.9
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 1.2e-10 71.6 256 31.2
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 3.5e-10 70.1 279 28.3
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 3.0e-09 67.0 203 28.1
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 3.9e-09 66.6 211 32.7
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 8.7e-09 65.5 206 25.7
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 1.5e-08 64.7 186 27.4
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 2.8e-07 60.5 196 27.0
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 1.1e-06 58.5 355 24.8
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 9.0e-06 55.5 296 25.7


User provided reference genes

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