Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01030164001 Vitis vinifera HOM05D002406 ORTHO05D438587 3.3e-43 177.9 89 100.0
Nitab4.5_0000381g0140 Nicotiana tabacum HOM05D002406 ORTHO05D006947 1.0e-07 60.1 32 93.8
Nitab4.5_0009611g0020 Nicotiana tabacum HOM05D002406 ORTHO05D006947 1.0e-07 60.1 32 93.8
MBI15_g32302_MAGBIO Magnolia biondii HOM05D002406 ORTHO05D006947 1.7e-07 59.3 31 96.8
MBI15_g39135_MAGBIO Magnolia biondii HOM05D002406 ORTHO05D006947 1.7e-07 59.3 31 96.8
Oeu038183.1 Olea europaea HOM05D002406 ORTHO05D006947 1.7e-07 59.3 31 96.8
Sabra04G0154600 Salix brachista HOM05D002406 ORTHO05D006947 1.7e-07 59.3 31 96.8
Sc20g0007090 Simmondsia chinensis HOM05D002406 ORTHO05D006947 1.7e-07 59.3 31 96.8
Zm00001eb290720 Zea mays HOM05D002406 ORTHO05D006947 2.9e-07 58.5 32 90.6
AUR62006432 Chenopodium quinoa HOM05D002406 ORTHO05D006947 3.9e-07 58.2 31 93.5
Ciclev10013871m.g Citrus clementina HOM05D002406 ORTHO05D006947 3.9e-07 58.2 31 93.5
Actinidia29026 Actinidia chinensis HOM05D002406 ORTHO05D006947 5.0e-07 57.8 31 93.5
CARHR212270 Cardamine hirsuta HOM05D002406 ORTHO05D006947 5.0e-07 57.8 31 93.5
Ca_23112_v3 Cicer arietinum L. HOM05D002406 ORTHO05D006947 5.0e-07 57.8 37 83.8
Glyma.18G215500 Glycine max HOM05D002406 ORTHO05D006947 5.0e-07 57.8 31 93.5
Lj3g0020337 Lotus japonicus HOM05D002406 ORTHO05D006947 5.0e-07 57.8 31 93.5
Phvul.010G058150 Phaseolus vulgaris HOM05D002406 ORTHO05D006947 5.0e-07 57.8 31 93.5
Potri.016G138500 Populus trichocarpa HOM05D002406 ORTHO05D006947 5.0e-07 57.8 31 93.5
PGR004G1558 Punica granatum HOM05D002406 ORTHO05D006947 5.0e-07 57.8 31 93.5
Rhsim05G0231800 Rhododendron simsii HOM05D002406 ORTHO05D006947 5.0e-07 57.8 31 93.5
vmacro20380 Vaccinium macrocarpon HOM05D002406 ORTHO05D006947 5.0e-07 57.8 31 93.5
VMungo0331G0841 Vigna mungo HOM05D002406 ORTHO05D006947 5.0e-07 57.8 31 93.5
GSVIVG01030166001 Vitis vinifera HOM05D002406 ORTHO05D006947 5.0e-07 57.8 31 93.5
Ah.08g209230 Amaranthus hybridus HOM05D002406 ORTHO05D006947 6.6e-07 57.4 33 87.9
arahy.Tifrunner.gnm1.ann1.ASNK84 Arachis hypogaea HOM05D002406 ORTHO05D006947 6.6e-07 57.4 30 96.7
arahy.Tifrunner.gnm1.ann1.CCHA9U Arachis hypogaea HOM05D002406 ORTHO05D006947 6.6e-07 57.4 30 96.7
Glyma.16G220200 Glycine max HOM05D002406 ORTHO05D006947 6.6e-07 57.4 30 96.7
Medtr8g005720 Medicago truncatula HOM05D002406 ORTHO05D006947 6.6e-07 57.4 41 75.6
Psat2g190920 Pisum sativum HOM05D002406 ORTHO05D006947 6.6e-07 57.4 31 93.5
HPP92_015598 Vanilla planifolia HOM05D002406 ORTHO05D006947 6.6e-07 57.4 30 96.7
QL07p031878 Quercus lobata HOM05D002406 ORTHO05D006947 8.6e-07 57.0 31 90.3
THA.LOC104823324 Tarenaya hassleriana HOM05D002406 ORTHO05D006947 8.6e-07 57.0 31 90.3
Os05g0480000 Oryza sativa ssp. japonica HOM05D002406 ORTHO05D006947 1.1e-06 56.6 31 90.3
Aa31LG5G11440 Aethionema arabicum HOM05D002406 ORTHO05D006947 1.5e-06 56.2 31 90.3
AT5G01920 Arabidopsis thaliana HOM05D002406 ORTHO05D006947 1.5e-06 56.2 31 90.3
A03p00050 Brassica napus HOM05D002406 ORTHO05D006947 1.5e-06 56.2 31 90.3
BraA03t09390Z Brassica rapa HOM05D002406 ORTHO05D006947 1.5e-06 56.2 31 90.3
Carub.0024s0012 Capsella rubella HOM05D002406 ORTHO05D006947 1.5e-06 56.2 31 90.3
CAN.G1018.4 Capsicum annuum HOM05D002406 ORTHO05D006947 1.5e-06 56.2 32 87.5
Dinv25354 Davidia involucrata HOM05D002406 ORTHO05D006947 1.5e-06 56.2 31 90.3
Thhalv10013451m.g Eutrema salsugineum HOM05D002406 ORTHO05D006947 1.5e-06 56.2 31 90.3
Glyma.03G002200 Glycine max HOM05D002406 ORTHO05D006947 1.5e-06 56.2 30 93.3
Manes.09G123000 Manihot esculenta HOM05D002406 ORTHO05D006947 1.5e-06 56.2 31 90.3
Sp6g41170 Schrenkiella parvula HOM05D002406 ORTHO05D006947 1.5e-06 56.2 31 90.3
Eucgr.K01293 Eucalyptus grandis HOM05D002406 ORTHO05D006947 1.9e-06 55.8 29 96.6
Lj1g0014887 Lotus japonicus HOM05D002406 ORTHO05D006947 1.9e-06 55.8 31 90.3
Phvul.008G081300 Phaseolus vulgaris HOM05D002406 ORTHO05D006947 1.9e-06 55.8 29 96.6
Potri.006G109700 Populus trichocarpa HOM05D002406 ORTHO05D006947 1.9e-06 55.8 30 93.3
TPR.G28726 Trifolium pratense HOM05D002406 ORTHO05D006947 1.9e-06 55.8 35 85.7
VMungo1383G0699 Vigna mungo HOM05D002406 ORTHO05D006947 1.9e-06 55.8 29 96.6
MD04G1176200 Malus domestica HOM05D002406 ORTHO05D006947 2.5e-06 55.5 31 90.3
MD12G1190500 Malus domestica HOM05D002406 ORTHO05D006947 2.5e-06 55.5 31 90.3
Nn2g10257 Nelumbo nucifera HOM05D002406 ORTHO05D006947 2.5e-06 55.5 31 87.1
PSO339G3893 Papaver somniferum HOM05D002406 ORTHO05D006947 2.5e-06 55.5 31 87.1
PSO384G1955 Papaver somniferum HOM05D002406 ORTHO05D006947 2.5e-06 55.5 31 87.1
Solyc10g085680.2 Solanum lycopersicum HOM05D002406 ORTHO05D006947 2.5e-06 55.5 32 87.5
PGSC0003DMG400008404 Solanum tuberosum HOM05D002406 ORTHO05D006947 2.5e-06 55.5 32 87.5
SGA_v2.0_scaffold373G50187 Striga asiatica HOM05D002406 ORTHO05D006947 2.5e-06 55.5 33 84.8
AL6G10110 Arabidopsis lyrata HOM05D002406 ORTHO05D006947 3.3e-06 55.1 31 87.1
MSTRG.5486 Avicennia marina HOM05D002406 ORTHO05D006947 3.3e-06 55.1 33 84.8
CANSAT21G0074 Cannabis sativa HOM05D002406 ORTHO05D006947 3.3e-06 55.1 31 87.1
TWI53G1769 Tripterygium wilfordii HOM05D002406 ORTHO05D006947 3.3e-06 55.1 33 81.8
TAR623G1642 Trochodendron aralioides HOM05D002406 ORTHO05D006947 3.3e-06 55.1 31 87.1
EL10Ac7g17121 Beta vulgaris HOM05D002406 ORTHO05D006947 4.3e-06 54.7 31 90.3
BcaB01g06124 Brassica carinata HOM05D002406 ORTHO05D006947 4.3e-06 54.7 31 87.1
C03p00190 Brassica napus HOM05D002406 ORTHO05D006947 4.3e-06 54.7 31 87.1
BolC3t12588H Brassica oleracea HOM05D002406 ORTHO05D006947 4.3e-06 54.7 31 87.1
Cfa017013 Carpinus fangiana HOM05D002406 ORTHO05D006947 4.3e-06 54.7 31 87.1
Haze_21193 Corylus avellana HOM05D002406 ORTHO05D006947 4.3e-06 54.7 31 87.1
Hund19751 Selenicereus undatus HOM05D002406 ORTHO05D006947 4.3e-06 54.7 31 87.1
unitig_22.g6614 Utricularia gibba HOM05D002406 ORTHO05D006947 4.3e-06 54.7 29 93.1
Atru.chr8.88 Acer truncatum HOM05D002406 ORTHO05D006947 5.6e-06 54.3 31 87.1
CDE06G1562 Ceratophyllum demersum HOM05D002406 ORTHO05D006947 5.6e-06 54.3 31 90.3
CDE07G2038 Ceratophyllum demersum HOM05D002406 ORTHO05D006947 5.6e-06 54.3 31 90.3
COL.COLO4_04756 Corchorus olitorius HOM05D002406 ORTHO05D006947 5.6e-06 54.3 29 93.1
Duzib151G0190 Durio zibethinus HOM05D002406 ORTHO05D006947 5.6e-06 54.3 29 93.1
ECA247G2519 Erigeron canadensis HOM05D002406 ORTHO05D006947 5.6e-06 54.3 31 87.1
HanXRQChr15g0464741 Helianthus annuus HOM05D002406 ORTHO05D006947 5.6e-06 54.3 31 87.1
Lsat_1_v5_gn_9_39580 Lactuca sativa HOM05D002406 ORTHO05D006947 5.6e-06 54.3 31 87.1
Thecc.04G149800 Theobroma cacao HOM05D002406 ORTHO05D006947 5.6e-06 54.3 29 93.1
FAN02G0625 Fragaria x ananassa HOM05D002406 ORTHO05D006947 7.3e-06 53.9 31 87.1
FAN05G1918 Fragaria x ananassa HOM05D002406 ORTHO05D006947 7.3e-06 53.9 31 87.1
Lalb_Chr07g0195731 Lupinus albus HOM05D002406 ORTHO05D006947 7.3e-06 53.9 32 90.6
Peaxi162Scf00146g01123 Petunia axillaris HOM05D002406 ORTHO05D006947 7.3e-06 53.9 31 87.1
CSS0035133 Camellia sinensis var. sinensis HOM05D002406 ORTHO05D006947 9.5e-06 53.5 31 83.9
Sopen10g035100 Solanum pennellii HOM05D002406 ORTHO05D006947 9.5e-06 53.5 29 93.1


User provided reference genes

Program Settings