Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01030151001 Vitis vinifera HOM05D002832 ORTHO05D007530 3.8e-30 134.0 62 100.0
GSVIVG01004671001 Vitis vinifera HOM05D002832 ORTHO05D007530 2.6e-18 94.7 46 93.5
Haze_03290 Corylus avellana HOM05D002832 ORTHO05D007530 2.2e-17 91.7 46 89.1
Cpa.g.sc119.6 Carica papaya HOM05D002832 ORTHO05D007530 6.4e-17 90.1 52 76.9
Duzib147G1416 Durio zibethinus HOM05D002832 ORTHO05D007530 6.4e-17 90.1 46 87.0
Thecc.01G000300 Theobroma cacao HOM05D002832 ORTHO05D007530 6.4e-17 90.1 46 87.0
Dinv19107 Davidia involucrata HOM05D008006 ORTHO05D007530 1.9e-16 88.6 46 84.8
Atru.chr1.2735 Acer truncatum HOM05D002832 ORTHO05D007530 2.4e-16 88.2 46 84.8
Gohir.D08G007800 Gossypium hirsutum HOM05D002832 ORTHO05D007530 2.4e-16 88.2 46 82.6
Gorai.004G001000 Gossypium raimondii HOM05D002832 ORTHO05D007530 2.4e-16 88.2 46 82.6
Ciclev10021568m.g Citrus clementina HOM05D002832 ORTHO05D007530 3.2e-16 87.8 46 80.4
Gohir.A08G000048 Gossypium hirsutum HOM05D002832 ORTHO05D007530 3.2e-16 87.8 46 82.6
Lj2C508G8 Lonicera japonica HOM05D002832 ORTHO05D007530 4.1e-16 87.4 46 84.8
Atru.chr12.1777 Acer truncatum HOM05D002832 ORTHO05D007530 5.4e-16 87.0 46 82.6
ClCG10G000060 Citrullus lanatus HOM05D002832 ORTHO05D007530 5.4e-16 87.0 46 82.6
Eucgr.I02174 Eucalyptus grandis HOM05D002832 ORTHO05D007530 5.4e-16 87.0 46 84.8
Hund19672 Selenicereus undatus HOM05D002832 ORTHO05D007530 5.4e-16 87.0 46 82.6
Nitab4.5_0000973g0050 Nicotiana tabacum HOM05D002832 ORTHO05D007530 7.0e-16 86.7 46 84.8
Aqoxy5G00934 Aquilegia oxysepala HOM05D002832 ORTHO05D007530 9.2e-16 86.3 46 82.6
CiPaw.07G213600 Carya illinoinensis HOM05D002832 ORTHO05D007530 1.2e-15 85.9 46 82.6
Peaxi162Scf00981g00020 Petunia axillaris HOM05D002832 ORTHO05D007530 1.2e-15 85.9 46 82.6
PGR119G1364 Punica granatum HOM05D002832 ORTHO05D007530 1.2e-15 85.9 46 80.4
TAR381G1552 Trochodendron aralioides HOM05D002832 ORTHO05D007530 1.2e-15 85.9 46 80.4
EL10Ac6g14726 Beta vulgaris HOM05D002832 ORTHO05D007530 1.6e-15 85.5 53 73.6
Sed0011741 Sechium edule HOM05D002832 ORTHO05D007530 1.6e-15 85.5 46 80.4
Sc03g0004220 Simmondsia chinensis HOM05D002832 ORTHO05D007530 1.6e-15 85.5 46 82.6
ATR0605G173 Amborella trichopoda HOM05D002832 ORTHO05D007530 2.0e-15 85.1 46 80.4
Gohir.D02G101400 Gossypium hirsutum HOM05D002832 ORTHO05D007530 2.0e-15 85.1 46 80.4
Gorai.005G114800 Gossypium raimondii HOM05D002832 ORTHO05D007530 2.0e-15 85.1 46 80.4
Oeu025037.1 Olea europaea HOM05D002832 ORTHO05D007530 2.7e-15 84.7 46 82.6
CAN.G883.6 Capsicum annuum HOM05D002832 ORTHO05D007530 3.5e-15 84.3 46 80.4
Cc07_g12400 Coffea canephora HOM05D002832 ORTHO05D007530 3.5e-15 84.3 46 80.4
Nn5g31082 Nelumbo nucifera HOM05D002832 ORTHO05D007530 3.5e-15 84.3 45 84.4
Solyc02g068360.4 Solanum lycopersicum HOM05D002832 ORTHO05D007530 3.5e-15 84.3 46 80.4
Sopen02g017490 Solanum pennellii HOM05D002832 ORTHO05D007530 3.5e-15 84.3 46 80.4
PGSC0003DMG402009429 Solanum tuberosum HOM05D002832 ORTHO05D007530 3.5e-15 84.3 46 80.4
AUR62016259 Chenopodium quinoa HOM05D002832 ORTHO05D007530 4.6e-15 84.0 54 70.4
Potri.011G146800 Populus trichocarpa HOM05D002832 ORTHO05D007530 4.6e-15 84.0 46 78.3
CANSAT64G0003 Cannabis sativa HOM05D002832 ORTHO05D007530 6.0e-15 83.6 46 80.4
Glyma.16G110900 Glycine max HOM05D002832 ORTHO05D007530 6.0e-15 83.6 46 80.4
MD15G1226000 Malus domestica HOM05D002832 ORTHO05D007530 6.0e-15 83.6 46 78.3
Manes.01G158900 Manihot esculenta HOM05D002832 ORTHO05D007530 6.0e-15 83.6 45 82.2
Phvul.003G279100 Phaseolus vulgaris HOM05D002832 ORTHO05D007530 7.8e-15 83.2 46 80.4
Hma1.2p1_0085F.1_g044160 Hydrangea macrophylla HOM05D002832 ORTHO05D007530 1.0e-14 82.8 46 78.3
PSO170G0896 Papaver somniferum HOM05D002832 ORTHO05D007530 1.3e-14 82.4 53 64.2
Lsat_1_v5_gn_8_113701 Lactuca sativa HOM05D008006 ORTHO05D010181 1.7e-14 82.0 46 78.3
Sabra11G0131700 Salix brachista HOM05D002832 ORTHO05D007530 1.7e-14 82.0 46 78.3
Zm00001eb433110 Zea mays HOM05D002832 ORTHO05D007530 1.7e-14 82.0 46 76.1
MELO3C013700.2 Cucumis melo HOM05D002832 ORTHO05D007530 2.3e-14 81.6 46 76.1
CsaV3_3G000060 Cucumis sativus L. HOM05D002832 ORTHO05D007530 2.3e-14 81.6 46 76.1
ECA240G4732 Erigeron canadensis HOM05D002832 ORTHO05D007530 2.3e-14 81.6 46 78.3
Nitab4.5_0000443g0200 Nicotiana tabacum HOM05D002832 ORTHO05D007530 3.0e-14 81.3 43 83.7
Prupe.7G189000 Prunus persica HOM05D002832 ORTHO05D007530 3.0e-14 81.3 46 73.9
Lj4g0005122 Lotus japonicus HOM05D002832 ORTHO05D007530 3.9e-14 80.9 46 78.3
TWI75G1807 Tripterygium wilfordii HOM05D002832 ORTHO05D007530 3.9e-14 80.9 46 78.3
Glyma.09G195000 Glycine max HOM05D002832 ORTHO05D007530 5.0e-14 80.5 46 76.1
HanXRQChr09g0258991 Helianthus annuus HOM05D002832 ORTHO05D007530 5.0e-14 80.5 46 76.1
Os04g0667000 Oryza sativa ssp. japonica HOM05D002832 ORTHO05D007530 1.1e-13 79.3 46 71.7
RcHm_v2.0_Chr2g0096581 Rosa chinensis HOM05D002832 ORTHO05D007530 1.5e-13 79.0 46 76.1
SGA_v2.0_scaffold45G17091 Striga asiatica HOM05D002832 ORTHO05D007530 1.5e-13 79.0 46 78.3
MD02G1106200 Malus domestica HOM05D002832 ORTHO05D007530 1.9e-13 78.6 46 71.7
Migut.K01159 Erythranthe guttata HOM05D002832 ORTHO05D007530 2.5e-13 78.2 46 73.9
Lalb_Chr09g0334461 Lupinus albus HOM05D002832 ORTHO05D007530 2.5e-13 78.2 53 64.2
Medtr8g072400 Medicago truncatula HOM05D002832 ORTHO05D007530 3.3e-13 77.8 46 76.1
QL04p000929 Quercus lobata HOM05D002832 ORTHO05D007530 3.3e-13 77.8 46 73.9
Rhsim08G0023700 Rhododendron simsii HOM05D002832 ORTHO05D007530 3.3e-13 77.8 43 79.1
vmacro18484 Vaccinium macrocarpon HOM05D002832 ORTHO05D007530 3.3e-13 77.8 40 82.5
FAN23G0606 Fragaria x ananassa HOM05D002832 ORTHO05D007530 4.3e-13 77.4 46 73.9
FAN23G2263 Fragaria x ananassa HOM05D002832 ORTHO05D007530 4.3e-13 77.4 46 73.9
FAN26G3411 Fragaria x ananassa HOM05D002832 ORTHO05D007530 4.3e-13 77.4 46 73.9
FAN28G1247 Fragaria x ananassa HOM05D002832 ORTHO05D007530 4.3e-13 77.4 46 73.9
FvH4_1g09860 Fragaria vesca HOM05D002832 ORTHO05D007530 5.6e-13 77.0 46 73.9
Psat4g106840 Pisum sativum HOM05D002832 ORTHO05D007530 7.3e-13 76.6 46 71.7
SEGI_38140 Sequoiadendron giganteum HOM05D002832 ORTHO05D007530 7.3e-13 76.6 46 76.1
SalBow5G4744 Salvia bowleyana HOM05D002832 ORTHO05D007530 9.5e-13 76.3 46 71.7
SMO356G0188 Selaginella moellendorffii HOM05D002832 ORTHO05D007530 1.2e-12 75.9 52 61.5
arahy.Tifrunner.gnm1.ann1.6ZX6SY Arachis hypogaea HOM05D002832 ORTHO05D007530 1.6e-12 75.5 46 71.7
arahy.Tifrunner.gnm1.ann1.TB2NW7 Arachis hypogaea HOM05D002832 ORTHO05D007530 1.6e-12 75.5 46 71.7
MSTRG.15608 Avicennia marina HOM05D002832 ORTHO05D007530 1.6e-12 75.5 46 71.7
Mapoly0006s0012 Marchantia polymorpha HOM05D002832 ORTHO05D007530 3.6e-12 74.3 53 60.4
CANSAT78G0091 Cannabis sativa HOM05D002832 ORTHO05D007530 2.3e-11 71.6 46 65.2
Ca_22443_v3 Cicer arietinum L. HOM05D002832 ORTHO05D007530 4.0e-11 70.9 43 67.4
Ca_22450_v3 Cicer arietinum L. HOM05D002832 ORTHO05D007530 4.0e-11 70.9 43 67.4
Thhalv10018972m.g Eutrema salsugineum HOM05D002832 ORTHO05D007530 4.0e-11 70.9 47 70.2
TPR.G14269 Trifolium pratense HOM05D002832 ORTHO05D007530 4.0e-11 70.9 43 69.8
BcaB03g16027 Brassica carinata HOM05D002832 ORTHO05D007530 5.2e-11 70.5 47 70.2
BcaB05g25152 Brassica carinata HOM05D002832 ORTHO05D007530 5.2e-11 70.5 47 70.2
A02p22330 Brassica napus HOM05D002832 ORTHO05D007530 5.2e-11 70.5 44 72.7
BcaC03g15836 Brassica carinata HOM05D002832 ORTHO05D007530 6.8e-11 70.1 44 72.7
A07p43940 Brassica napus HOM05D002832 ORTHO05D007530 6.8e-11 70.1 44 72.7
C02p35870 Brassica napus HOM05D002832 ORTHO05D007530 6.8e-11 70.1 44 72.7
C06p52570 Brassica napus HOM05D002832 ORTHO05D007530 6.8e-11 70.1 44 72.7
BolC6t40275H Brassica oleracea HOM05D003130 ORTHO05D007530 6.8e-11 70.1 44 72.7
BraA02t07237Z Brassica rapa HOM05D002832 ORTHO05D007530 6.8e-11 70.1 44 72.7
BraA07t31901Z Brassica rapa HOM05D002832 ORTHO05D007530 6.8e-11 70.1 44 72.7
Sp5g33750 Schrenkiella parvula HOM05D002832 ORTHO05D007530 6.8e-11 70.1 47 70.2
SpUn0074_0060 Schrenkiella parvula HOM05D002832 ORTHO05D007530 6.8e-11 70.1 47 70.2
AL262U10020 Arabidopsis lyrata HOM05D002832 ORTHO05D007530 8.9e-11 69.7 47 68.1
AL2G39090 Arabidopsis lyrata HOM05D002832 ORTHO05D007530 8.9e-11 69.7 47 68.1
AT1G78690 Arabidopsis thaliana HOM05D002832 ORTHO05D007530 8.9e-11 69.7 47 68.1
Carub.0002s2555 Capsella rubella HOM05D002832 ORTHO05D007530 8.9e-11 69.7 47 68.1
DCAR_005376 Daucus carota HOM05D002832 ORTHO05D007530 1.2e-10 69.3 38 78.9
THA.LOC104812307 Tarenaya hassleriana HOM05D002832 ORTHO05D007530 1.5e-10 68.9 47 68.1
Aa31LG4G2300 Aethionema arabicum HOM05D002832 ORTHO05D007530 2.0e-10 68.6 47 68.1
Thecc.03G117500 Theobroma cacao HOM05D002832 ORTHO05D007530 2.0e-10 68.6 43 65.1
unitig_0.g2636 Utricularia gibba HOM05D002832 ORTHO05D007530 2.6e-10 68.2 46 65.2
Pp3c5_26280 Physcomitrium patens HOM05D002832 ORTHO05D007530 9.8e-10 66.2 46 60.9
BolC2t09600H Brassica oleracea HOM05D002832 ORTHO05D007530 1.7e-09 65.5 45 71.1
CARHR072220 Cardamine hirsuta HOM05D002832 ORTHO05D007530 1.7e-09 65.5 46 65.2
CBR_g30126 Chara braunii HOM05D002832 ORTHO05D007530 1.4e-08 62.4 53 52.8
COL.COLO4_22571 Corchorus olitorius HOM05D002832 ORTHO05D007530 1.3e-06 55.8 26 84.6
AUR62003323 Chenopodium quinoa HOM05D002832 ORTHO05D007530 2.3e-06 55.1 26 84.6
BcaC08g47462 Brassica carinata HOM05D002832 ORTHO05D007530 8.6e-06 53.1 36 66.7


User provided reference genes

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