Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 0.0e+00 1190.3 611 100.0
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 3.7e-250 868.2 508 87.6
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 5.3e-249 864.4 508 86.2
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 7.7e-248 860.5 508 86.4
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 7.7e-248 860.5 508 86.4
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 6.5e-247 857.4 508 85.8
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 8.5e-247 857.1 508 86.8
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 8.5e-247 857.1 508 85.2
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.9e-246 855.9 508 85.4
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 3.2e-246 855.1 508 85.6
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.2e-246 855.1 508 86.6
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 4.2e-246 854.7 508 86.4
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 5.5e-246 854.4 508 85.2
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 9.4e-246 853.6 508 85.0
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 9.4e-246 853.6 508 86.2
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.6e-245 852.8 508 86.0
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.1e-245 852.4 508 85.2
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.6e-245 851.7 508 86.2
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 4.7e-245 851.3 508 84.8
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 4.7e-245 851.3 508 84.3
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.7e-245 851.3 508 84.8
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 4.7e-245 851.3 508 85.0
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 6.1e-245 850.9 508 84.4
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 1.0e-244 850.1 508 84.1
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 1.4e-244 849.7 508 84.4
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.4e-244 849.7 508 85.2
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.8e-244 849.4 508 85.0
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 3.0e-244 848.6 508 84.6
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.9e-244 848.2 508 84.8
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 5.1e-244 847.8 508 85.4
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 6.7e-244 847.4 508 84.8
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 1.1e-243 846.7 508 85.6
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 2.0e-243 845.9 513 84.2
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 2.6e-243 845.5 508 84.1
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 2.6e-243 845.5 508 83.7
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 4.4e-243 844.7 508 85.2
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.2e-242 842.4 508 85.0
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 2.8e-242 842.0 508 83.7
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 5.3e-241 837.8 508 83.9
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 5.3e-241 837.8 508 83.9
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 9.1e-241 837.0 508 84.1
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.2e-240 836.6 508 82.5
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.5e-240 836.3 508 82.7
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 2.6e-240 835.5 508 83.3
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 2.6e-240 835.5 508 84.3
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 4.5e-240 834.7 508 83.3
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 5.9e-240 834.3 508 83.5
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 1.0e-239 833.6 508 83.3
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.0e-239 833.6 509 83.5
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.3e-239 833.2 509 82.9
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 5.0e-239 831.2 508 84.1
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 6.5e-239 830.9 509 84.1
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 6.5e-239 830.9 509 83.5
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.4e-238 829.7 508 84.1
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 9.4e-238 827.0 510 83.3
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 9.4e-238 827.0 508 82.5
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 2.7e-237 825.5 509 84.3
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 3.6e-237 825.1 508 81.3
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 3.0e-236 822.0 508 81.9
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.1e-235 820.1 508 82.1
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 3.3e-235 818.5 508 81.7
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 5.7e-235 817.8 508 81.1
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 3.7e-234 815.1 509 80.4
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 4.8e-234 814.7 487 86.0
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 6.3e-234 814.3 508 81.7
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 6.3e-234 814.3 509 80.9
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 6.3e-234 814.3 544 77.6
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 8.2e-234 813.9 509 80.6
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 8.2e-234 813.9 509 80.6
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.1e-233 813.5 509 80.6
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 4.1e-233 811.6 508 80.9
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 5.3e-233 811.2 509 80.2
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 7.0e-233 810.8 509 80.0
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 7.0e-233 810.8 509 80.0
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 7.0e-233 810.8 509 80.0
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 7.0e-233 810.8 509 80.6
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 9.1e-233 810.4 508 81.1
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 2.6e-232 808.9 509 79.2
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 4.5e-232 808.1 509 80.0
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 4.5e-232 808.1 508 81.5
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 7.7e-232 807.4 509 79.8
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 1.0e-231 807.0 509 80.0
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.0e-231 807.0 508 81.3
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.7e-231 806.2 508 80.1
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 2.2e-231 805.8 508 79.5
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.2e-231 805.8 508 81.5
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 5.0e-231 804.7 509 79.4
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 6.5e-231 804.3 510 80.2
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 1.2e-229 800.0 510 80.8
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 1.6e-229 799.7 529 79.0
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 2.1e-229 799.3 508 81.1
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 2.7e-229 798.9 508 81.1
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 6.1e-229 797.7 508 80.1
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 6.1e-229 797.7 508 80.9
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 8.8e-228 793.9 509 79.4
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 1.2e-227 793.5 508 80.7
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 1.2e-227 793.5 613 69.0
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.5e-227 793.1 508 80.3
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 4.4e-227 791.6 609 69.8
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 4.4e-227 791.6 510 78.8
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 9.7e-227 790.4 508 82.3
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 2.0e-224 782.7 511 79.5
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 4.5e-224 781.6 509 78.6
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.0e-223 780.4 508 78.0
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.2e-223 779.2 508 78.7
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 1.1e-222 776.9 508 78.3
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.6e-221 773.1 508 77.8
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.7e-221 772.3 508 77.2
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 5.2e-220 768.1 508 77.6
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 6.8e-220 767.7 508 79.1
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 3.7e-218 761.9 508 76.2
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 5.4e-217 758.1 508 74.6
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.9e-214 749.6 508 77.8
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 1.7e-207 726.5 509 73.1
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 4.7e-205 718.4 509 72.1
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 4.9e-202 708.4 511 72.0
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 3.2e-201 705.7 511 72.8
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 7.0e-201 704.5 508 70.9
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 3.9e-199 698.7 508 71.3
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 9.9e-187 657.5 430 80.7
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 3.2e-185 652.5 449 74.6
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.2e-184 650.6 508 68.5
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 7.3e-182 641.3 425 77.2
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 6.4e-178 628.2 504 68.8
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.4e-177 627.1 477 68.8
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 6.7e-159 565.1 510 60.2
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 5.5e-153 545.4 369 74.8
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 1.3e-149 534.3 298 89.6
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.2e-138 496.9 397 69.8
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 3.8e-138 496.1 488 60.9
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 4.6e-136 489.2 507 50.9
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 7.7e-123 445.3 314 75.2
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 9.4e-121 438.3 240 90.4
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 3.9e-119 433.0 252 86.9
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 3.5e-107 393.3 503 45.9
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.2e-94 351.7 228 82.5
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 1.8e-92 344.4 543 41.6
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 1.3e-90 338.2 207 80.7
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 1.5e-73 281.6 207 68.1
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 7.3e-73 279.3 164 84.1
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 3.4e-62 243.8 245 51.0
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 1.1e-57 228.8 229 47.6
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 4.0e-47 193.7 263 43.3
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 1.0e-42 179.1 96 86.5
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 3.1e-31 141.0 137 58.4
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 1.4e-28 132.1 66 89.4
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 3.9e-26 124.0 205 42.9
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 2.8e-24 117.9 187 42.2
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.0e-18 99.4 50 84.0
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 1.8e-15 88.6 81 58.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 2.9e-13 81.3 41 95.1
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 2.9e-13 81.3 41 95.1
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 3.8e-13 80.9 65 67.7
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.1e-12 79.3 60 68.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 5.7e-09 67.0 57 54.4
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 7.4e-09 66.6 30 100.0
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 7.4e-09 66.6 30 100.0
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 1.4e-07 62.4 60 55.0
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 1.4e-07 62.4 60 55.0
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 5.3e-07 60.5 241 27.8
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 7.0e-07 60.1 57 42.1
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 1.2e-06 59.3 60 53.3
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 2.0e-06 58.5 55 56.4


User provided reference genes

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