Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 1.4e-254 882.5 440 100.0
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 3.0e-209 731.9 438 81.7
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 1.5e-208 729.6 438 81.1
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 8.3e-204 713.8 431 81.7
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 1.9e-203 712.6 429 79.7
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 6.0e-202 707.6 438 77.6
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.0e-201 706.8 438 78.8
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 3.0e-201 705.3 434 79.0
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 5.1e-201 704.5 437 77.8
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.1e-200 703.4 429 80.2
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 7.3e-200 700.7 429 80.4
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 2.8e-199 698.7 436 77.1
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 6.2e-199 697.6 438 77.2
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 8.1e-199 697.2 434 77.2
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 2.4e-198 695.7 436 78.0
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 8.9e-198 693.7 438 76.9
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 1.5e-197 693.0 434 76.7
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 2.0e-197 692.6 430 77.7
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.7e-196 689.5 429 78.8
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 1.4e-195 686.4 438 75.6
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 1.9e-195 686.0 436 77.5
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 2.4e-195 685.6 429 78.3
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 7.1e-195 684.1 440 76.1
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 4.6e-194 681.4 429 77.6
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 7.8e-194 680.6 430 77.4
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 1.0e-193 680.2 433 76.2
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 1.7e-193 679.5 440 75.7
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.1e-192 676.8 436 74.5
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 1.9e-192 676.0 431 74.7
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 1.9e-192 676.0 463 73.0
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 1.2e-191 673.3 438 75.6
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 1.2e-191 673.3 476 71.4
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 6.2e-191 671.0 431 74.5
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 9.0e-190 667.2 434 73.7
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 4.4e-189 664.8 439 73.6
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 5.8e-189 664.5 433 75.1
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 9.9e-189 663.7 433 73.9
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 1.7e-188 662.9 439 73.6
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.7e-188 662.9 439 75.4
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 2.2e-188 662.5 431 74.2
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 2.2e-188 662.5 432 74.8
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 2.9e-188 662.1 430 75.1
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 3.8e-188 661.8 430 74.4
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 8.4e-188 660.6 431 73.1
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 2.4e-187 659.1 430 74.7
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 2.4e-187 659.1 431 73.3
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 4.2e-187 658.3 431 73.8
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 6.0e-186 654.4 435 73.3
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 5.1e-185 651.4 432 73.1
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 6.6e-185 651.0 432 72.7
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 1.6e-183 646.4 433 73.4
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.1e-183 646.0 428 73.6
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 3.6e-183 645.2 436 73.2
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 4.8e-183 644.8 430 74.0
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 2.4e-182 642.5 436 72.9
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 3.1e-182 642.1 430 73.5
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 4.0e-182 641.7 430 73.7
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 6.9e-182 641.0 439 71.3
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 1.5e-181 639.8 428 72.2
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 3.4e-181 638.6 436 72.5
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 3.4e-181 638.6 438 71.2
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 9.9e-181 637.1 430 72.8
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 1.3e-180 636.7 430 73.0
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 1.1e-179 633.6 430 72.8
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 5.4e-179 631.3 437 71.4
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 1.6e-178 629.8 434 73.0
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 7.9e-178 627.5 430 72.1
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.0e-177 627.1 437 71.4
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 1.9e-176 622.9 416 72.8
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 1.9e-176 622.9 525 61.0
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 4.3e-176 621.7 432 70.8
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 5.6e-176 621.3 429 71.8
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.3e-175 620.2 516 62.2
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 2.1e-175 619.4 433 69.1
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 3.7e-175 618.6 429 71.3
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 3.7e-175 618.6 449 69.3
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 4.0e-174 615.1 443 70.2
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 2.6e-173 612.5 472 66.5
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 3.4e-173 612.1 474 65.4
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 4.5e-173 611.7 375 80.5
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 9.9e-173 610.5 416 71.9
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 5.5e-171 604.7 431 67.7
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 2.1e-170 602.8 437 67.7
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 1.3e-169 600.1 473 65.1
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.8e-169 599.7 382 79.3
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.0e-164 583.9 438 67.1
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 4.6e-162 575.1 445 64.5
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 4.3e-160 568.5 436 66.7
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 7.4e-160 567.8 421 67.7
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 2.2e-159 566.2 379 73.4
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.8e-159 565.1 441 64.9
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 7.2e-155 551.2 428 66.8
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 1.4e-153 547.0 456 62.9
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 6.7e-153 544.7 380 70.5
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 8.8e-153 544.3 380 70.5
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 7.4e-152 541.2 376 70.7
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 7.7e-149 531.2 726 43.4
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 6.5e-148 528.1 430 63.0
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 8.5e-148 527.7 700 45.1
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 1.1e-142 510.8 362 70.2
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 2.2e-135 486.5 441 56.7
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 1.3e-127 460.7 300 75.3
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 4.8e-127 458.8 431 52.9
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.2e-124 449.9 316 70.6
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 2.7e-122 443.0 339 67.0
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 1.4e-121 440.7 431 50.8
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 3.0e-121 439.5 341 65.1
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 4.4e-120 435.6 295 72.5
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 4.9e-111 405.6 435 50.3
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 3.0e-100 369.8 350 54.0
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 4.4e-96 355.9 223 80.7
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 3.9e-92 342.8 246 69.5
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.4e-86 324.3 219 72.1
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 6.2e-74 282.3 237 64.1
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.6e-69 267.7 441 39.7
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 3.0e-68 263.5 161 80.7
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 2.5e-67 260.4 283 52.3
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 4.8e-66 256.1 215 64.2
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 8.4e-63 245.4 140 83.6
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 3.5e-61 240.0 429 33.3
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 6.5e-55 219.2 159 67.3
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.9e-51 207.6 134 76.1
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.9e-51 207.6 142 69.7
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 4.1e-49 199.9 140 70.0
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 3.1e-41 173.7 149 55.0
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 3.8e-39 166.8 319 32.9
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 7.4e-35 152.5 200 47.0
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 2.2e-34 151.0 193 47.7
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.4e-28 131.7 120 57.5
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 2.8e-26 124.0 146 51.4
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 8.2e-26 122.5 94 59.6
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 2.5e-22 110.9 79 60.8
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 5.2e-20 103.2 52 84.6
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.8e-17 94.7 85 50.6
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 3.1e-17 94.0 69 63.8
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 4.5e-16 90.1 69 62.3
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 2.9e-15 87.4 69 60.9
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 4.4e-11 73.6 41 75.6
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 9.8e-11 72.4 43 76.7
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 6.3e-10 69.7 46 67.4
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 5.4e-09 66.6 54 64.8
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 4.5e-08 63.5 39 82.1


User provided reference genes

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