Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01029532001 Vitis vinifera HOM05D007396 ORTHO05D009228 2.9e-177 625.2 324 100.0
Ciclev10013937m.g Citrus clementina HOM05D007396 ORTHO05D009228 1.6e-127 459.9 324 69.8
Sopen03g032560 Solanum pennellii HOM05D007396 ORTHO05D009228 6.7e-126 454.5 329 69.3
Nitab4.5_0000642g0070 Nicotiana tabacum HOM05D007396 ORTHO05D009228 2.0e-125 453.0 333 70.3
Solyc03g113510.2 Solanum lycopersicum HOM05D007396 ORTHO05D009228 2.6e-125 452.6 327 69.7
CAN.G999.17 Capsicum annuum HOM05D007396 ORTHO05D009228 2.2e-124 449.5 328 68.6
Cc02_g09240 Coffea canephora HOM05D007396 ORTHO05D009228 2.2e-124 449.5 325 70.8
Cpa.g.sc176.25 Carica papaya HOM05D007396 ORTHO05D009228 4.1e-123 445.3 328 68.0
PGSC0003DMG400024566 Solanum tuberosum HOM05D007396 ORTHO05D009228 4.1e-123 445.3 327 68.2
Eucgr.E02613 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.3e-123 444.9 327 68.8
Nn8g41117 Nelumbo nucifera HOM05D007396 ORTHO05D009228 1.2e-122 443.7 342 66.4
Prupe.3G025300 Prunus persica HOM05D007396 ORTHO05D009228 3.5e-122 442.2 328 68.6
Eucgr.E02321 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.5e-122 441.8 327 68.5
Nitab4.5_0005451g0030 Nicotiana tabacum HOM05D007396 ORTHO05D009228 1.3e-121 440.3 317 71.3
Eucgr.E02270 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.2e-120 435.3 327 67.9
Aqoxy2G02658 Aquilegia oxysepala HOM05D007396 ORTHO05D009228 2.1e-119 433.0 333 66.1
vmacro00415 Vaccinium macrocarpon HOM05D007396 ORTHO05D009228 2.1e-119 433.0 325 66.2
PSO170G5362 Papaver somniferum HOM05D007396 ORTHO05D009228 1.8e-118 429.9 335 66.9
Eucgr.E02934 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.3e-118 429.5 327 67.3
PSO063G4472 Papaver somniferum HOM05D007396 ORTHO05D009228 2.3e-118 429.5 335 67.5
Gorai.003G062400 Gossypium raimondii HOM05D007396 ORTHO05D009228 5.2e-118 428.3 325 65.5
RcHm_v2.0_Chr2g0149061 Rosa chinensis HOM05D007396 ORTHO05D009228 1.1e-117 427.2 329 68.7
COL.COLO4_38280 Corchorus olitorius HOM05D007396 ORTHO05D009228 2.0e-117 426.4 329 65.0
CiPaw.01G206900 Carya illinoinensis HOM05D007396 ORTHO05D009228 2.6e-117 426.0 322 69.9
Gohir.A02G117900 Gossypium hirsutum HOM05D007396 ORTHO05D009228 2.6e-117 426.0 326 65.6
Gohir.D03G058600 Gossypium hirsutum HOM05D007396 ORTHO05D009228 7.4e-117 424.5 325 65.2
HPP92_017379 Vanilla planifolia HOM05D007396 ORTHO05D009228 1.7e-116 423.3 330 64.2
Manes.06G178800 Manihot esculenta HOM05D007396 ORTHO05D009228 2.8e-116 422.5 326 65.6
FvH4_6g36570 Fragaria vesca HOM05D007396 ORTHO05D009228 3.7e-116 422.2 329 67.5
FAN14G5522 Fragaria x ananassa HOM05D000163 ORTHO05D009228 4.8e-116 421.8 329 67.2
Duzib192G0415 Durio zibethinus HOM05D007396 ORTHO05D009228 8.2e-116 421.0 307 69.7
FAN09G0647 Fragaria x ananassa HOM05D007396 ORTHO05D009228 3.1e-115 419.1 329 68.1
Cfa003427 Carpinus fangiana HOM05D007396 ORTHO05D009228 4.1e-115 418.7 324 66.0
FAN02G1321 Fragaria x ananassa HOM05D000163 ORTHO05D000219 3.5e-114 415.6 320 66.6
Oeu045511.1 Olea europaea HOM05D007396 ORTHO05D009228 2.2e-113 412.9 329 63.8
Hund05665 Selenicereus undatus HOM05D007396 ORTHO05D009228 3.8e-113 412.1 328 62.2
CANSAT01G2937 Cannabis sativa HOM05D007396 ORTHO05D009228 1.1e-112 410.6 340 62.1
Sp1g14920 Schrenkiella parvula HOM05D007396 ORTHO05D009228 1.0e-110 404.1 329 65.0
AUR62025704 Chenopodium quinoa HOM05D007396 ORTHO05D009228 1.4e-110 403.7 333 62.5
CARHR017230 Cardamine hirsuta HOM05D007396 ORTHO05D009228 3.0e-110 402.5 329 62.9
ECA233G2395 Erigeron canadensis HOM05D007396 ORTHO05D009228 5.2e-110 401.7 336 61.6
Thhalv10009697m.g Eutrema salsugineum HOM05D007396 ORTHO05D009228 3.4e-109 399.1 328 61.9
AL1G28940 Arabidopsis lyrata HOM05D007396 ORTHO05D009228 5.7e-109 398.3 328 61.9
THA.LOC104812337 Tarenaya hassleriana HOM05D007396 ORTHO05D009228 9.7e-109 397.5 329 65.3
Sc05g0005440 Simmondsia chinensis HOM05D007396 ORTHO05D009228 1.7e-108 396.7 316 66.1
AUR62001321 Chenopodium quinoa HOM05D007396 ORTHO05D009228 3.7e-108 395.6 309 65.0
BcaB03g13031 Brassica carinata HOM05D007396 ORTHO05D009228 4.8e-108 395.2 315 63.8
Aa31LG7G1230 Aethionema arabicum HOM05D007396 ORTHO05D009228 2.4e-107 392.9 371 58.8
Lsat_1_v5_gn_4_106220 Lactuca sativa HOM05D007396 ORTHO05D009228 4.1e-107 392.1 324 63.6
Eucgr.E02145 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.3e-107 391.7 324 63.0
QL03p030511 Quercus lobata HOM05D007396 ORTHO05D009228 7.0e-107 391.3 292 71.6
Carub.0001s1651 Capsella rubella HOM05D007396 ORTHO05D009228 9.1e-107 391.0 328 63.1
Eucgr.E02947 Eucalyptus grandis HOM05D007396 ORTHO05D009228 9.1e-107 391.0 325 63.1
EL10Ac7g18125 Beta vulgaris HOM05D007396 ORTHO05D009228 1.2e-106 390.6 316 64.9
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 6.5e-105 384.8 296 67.6
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 2.5e-104 382.9 312 64.4
PGR031G2036 Punica granatum HOM05D007396 ORTHO05D009228 4.2e-104 382.1 324 62.0
Sed0010526 Sechium edule HOM05D007396 ORTHO05D009228 7.2e-104 381.3 334 59.9
TWI12G0468 Tripterygium wilfordii HOM05D007396 ORTHO05D009228 7.2e-104 381.3 278 68.3
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 9.4e-104 380.9 312 62.5
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 9.4e-104 380.9 296 67.2
MD17G1161100 Malus domestica HOM05D007396 ORTHO05D009228 1.2e-103 380.6 338 63.0
CDE06G1120 Ceratophyllum demersum HOM05D007396 ORTHO05D009228 1.3e-100 370.5 298 62.4
DCAR_005735 Daucus carota HOM05D007396 ORTHO05D009228 1.3e-100 370.5 337 58.2
Migut.M00713 Erythranthe guttata HOM05D007396 ORTHO05D009228 1.3e-100 370.5 341 60.7
CsaV3_4G028760 Cucumis sativus L. HOM05D007396 ORTHO05D009228 8.3e-100 367.9 332 58.7
ClCG07G014720 Citrullus lanatus HOM05D007396 ORTHO05D009228 1.1e-99 367.5 325 59.1
SGA_v2.0_scaffold71G23969 Striga asiatica HOM05D000927 ORTHO05D009228 4.1e-99 365.5 328 60.1
Os02g0140800 Oryza sativa ssp. japonica HOM05D007396 ORTHO05D009228 1.6e-98 363.6 366 54.1
SEGI_29070 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 4.2e-96 355.5 333 61.3
BcaC07g38814 Brassica carinata HOM05D007396 ORTHO05D009228 6.1e-95 351.7 276 65.9
Eucgr.E02931 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.6e-93 346.3 323 57.9
Psat5g306960 Pisum sativum HOM05D007396 ORTHO05D009228 1.8e-91 340.1 294 59.5
AT1G16770 Arabidopsis thaliana HOM05D007396 ORTHO05D009228 7.8e-90 334.7 280 61.4
HanXRQChr06g0173121 Helianthus annuus HOM05D007396 ORTHO05D009228 9.5e-88 327.8 321 53.3
MBI13_g34300_MAGBIO Magnolia biondii HOM05D007396 ORTHO05D009228 5.2e-86 322.0 225 69.8
Zm00001eb328020 Zea mays HOM05D007396 ORTHO05D009228 2.6e-85 319.7 301 57.5
CSS0031419 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 7.0e-83 311.6 329 52.0
Actinidia31122 Actinidia chinensis HOM05D007396 ORTHO05D009228 5.0e-81 305.4 214 70.1
SalBow6G2527 Salvia bowleyana HOM05D007396 ORTHO05D009228 8.6e-81 304.7 324 50.0
Haze_16206 Corylus avellana HOM05D007396 ORTHO05D009228 3.3e-80 302.8 212 68.9
Eucgr.E02547 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.6e-80 302.0 277 58.8
Potri.014G003300 Populus trichocarpa HOM05D007396 ORTHO05D009228 2.6e-77 293.1 329 55.3
Potri.004G169900 Populus trichocarpa HOM05D007396 ORTHO05D009228 9.2e-75 284.6 326 53.1
Eucgr.E02162 Eucalyptus grandis HOM05D007396 ORTHO05D009228 6.6e-73 278.5 326 50.3
Eucgr.E02214 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.3e-72 276.2 327 52.3
Medtr2g105720 Medicago truncatula HOM05D007396 ORTHO05D009228 7.3e-72 275.0 216 64.4
Eucgr.J03193 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.8e-71 273.1 316 50.0
Eucgr.E02918 Eucalyptus grandis HOM05D007396 ORTHO05D009228 8.1e-71 271.6 228 62.7
BcaC05g25536 Brassica carinata HOM05D007396 ORTHO05D009228 1.2e-69 267.7 279 55.6
Eucgr.E02217 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.5e-69 267.3 192 68.2
Eucgr.E02284 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.9e-68 262.3 276 53.6
CSS0029409 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 6.2e-63 245.4 179 68.2
Eucgr.E02226 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.4e-61 239.2 177 69.5
Pp3c5_8210 Physcomitrium patens HOM05D007396 ORTHO05D009228 5.1e-57 225.7 366 37.7
Thecc.06G054000 Theobroma cacao HOM05D007396 ORTHO05D009228 1.1e-54 218.0 144 72.2
CBR_g41808 Chara braunii HOM05D007396 ORTHO05D009228 2.4e-54 216.9 243 47.7
ATR0626G334 Amborella trichopoda HOM05D007396 ORTHO05D009228 9.0e-54 214.9 174 60.9
MELO3C032656.2 Cucumis melo HOM05D007396 ORTHO05D009228 9.0e-54 214.9 173 64.2
unitig_32.g11080 Utricularia gibba HOM05D007396 ORTHO05D009228 3.2e-51 206.5 298 39.6
Lj7C720T3 Lonicera japonica HOM05D007396 ORTHO05D009228 1.1e-46 191.4 165 58.8
BcaC07g38815 Brassica carinata HOM05D007396 ORTHO05D009228 7.6e-37 158.7 295 36.3
MELO3C010415.2 Cucumis melo HOM05D007396 ORTHO05D009228 1.1e-30 138.3 155 49.0
Mapoly0001s0056 Marchantia polymorpha HOM05D007396 ORTHO05D009228 4.6e-26 122.9 241 34.9
Sabra14G0002100 Salix brachista HOM05D007396 ORTHO05D009228 9.4e-19 98.6 96 52.1
Medtr2g105710 Medicago truncatula HOM05D007396 ORTHO05D009228 7.9e-18 95.5 69 66.7
BcaC05g25534 Brassica carinata HOM05D000163 ORTHO05D000219 2.3e-17 94.0 105 48.6
Cre07.g325721 Chlamydomonas reinhardtii HOM05D007396 ORTHO05D009228 9.1e-14 82.0 184 31.0
Actinidia31121 Actinidia chinensis HOM05D007396 ORTHO05D009228 1.2e-13 81.6 69 62.3
SEGI_36165 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 1.3e-07 61.6 41 68.3
SEGI_21917 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 9.1e-06 55.5 93 37.6


User provided reference genes

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