Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.7e-44 182.2 86 100.0
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.2e-31 138.7 68 97.1
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 1.4e-22 109.4 68 75.0
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 3.1e-22 108.2 68 75.0
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 9.1e-22 106.7 67 74.6
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 9.1e-22 106.7 67 74.6
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.2e-21 106.3 67 73.1
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 2.7e-21 105.1 66 74.2
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 2.7e-21 105.1 66 74.2
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 4.5e-21 104.4 68 73.5
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 5.9e-21 104.0 66 72.7
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 7.7e-21 103.6 73 68.5
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 7.7e-21 103.6 65 75.4
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 7.7e-21 103.6 66 74.2
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.0e-20 103.2 68 72.1
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 1.0e-20 103.2 67 71.6
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 1.3e-20 102.8 68 70.6
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 1.7e-20 102.4 66 74.2
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.8e-20 101.3 66 74.2
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 3.8e-20 101.3 65 72.3
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 3.8e-20 101.3 68 73.5
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 6.5e-20 100.5 68 69.1
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 8.5e-20 100.1 67 70.1
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 1.5e-19 99.4 66 68.2
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.5e-19 99.4 65 69.2
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 1.9e-19 99.0 65 69.2
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 1.9e-19 99.0 56 82.1
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 2.5e-19 98.6 66 69.7
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 3.2e-19 98.2 63 73.0
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.2e-19 98.2 72 65.3
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 4.2e-19 97.8 68 70.6
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 5.5e-19 97.4 66 71.2
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 5.5e-19 97.4 68 69.1
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 5.5e-19 97.4 65 70.8
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 7.2e-19 97.1 68 66.2
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 7.2e-19 97.1 68 66.2
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.2e-18 96.3 73 65.8
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 2.7e-18 95.1 65 69.2
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.7e-18 95.1 66 69.7
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 3.6e-18 94.7 66 66.7
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 3.6e-18 94.7 69 65.2
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 3.6e-18 94.7 67 68.7
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 3.6e-18 94.7 66 65.2
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 6.1e-18 94.0 66 68.2
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 6.1e-18 94.0 65 67.7
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 1.8e-17 92.4 57 73.7
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 3.0e-17 91.7 66 63.6
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 4.0e-17 91.3 66 66.7
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 5.2e-17 90.9 66 68.2
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 6.8e-17 90.5 66 62.1
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 1.2e-16 89.7 67 64.2
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 1.2e-16 89.7 57 68.4
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 1.5e-16 89.4 66 62.1
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 3.4e-16 88.2 66 59.1
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 4.4e-16 87.8 66 59.1
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 5.7e-16 87.4 68 63.2
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 5.7e-16 87.4 69 59.4
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 7.5e-16 87.0 66 62.1
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 7.5e-16 87.0 67 61.2
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 9.8e-16 86.7 68 60.3
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 9.8e-16 86.7 60 66.7
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 9.8e-16 86.7 66 59.1
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 9.8e-16 86.7 66 59.1
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 9.8e-16 86.7 66 59.1
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.3e-15 86.3 65 61.5
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.7e-15 85.9 65 60.0
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.7e-15 85.9 65 60.0
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.7e-15 85.9 82 51.2
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 2.2e-15 85.5 68 60.3
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 2.2e-15 85.5 68 60.3
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 2.8e-15 85.1 66 57.6
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.8e-15 85.1 63 61.9
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 3.7e-15 84.7 64 59.4
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 3.7e-15 84.7 65 58.5
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 4.8e-15 84.3 69 55.1
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 8.3e-15 83.6 68 57.4
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 1.8e-14 82.4 67 58.2
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 2.4e-14 82.0 82 48.8
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 5.4e-14 80.9 67 56.7
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 9.1e-14 80.1 51 68.6
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.2e-13 79.7 61 62.3
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 1.6e-13 79.3 51 72.5
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 2.0e-13 79.0 65 52.3
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 2.0e-13 79.0 63 57.1
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.5e-13 78.2 59 62.7
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 5.9e-13 77.4 56 66.1
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-12 76.6 68 51.5
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-12 76.6 67 52.2
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-12 76.6 68 51.5
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 1.7e-12 75.9 68 52.9
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 1.7e-12 75.9 68 52.9
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 3.8e-12 74.7 64 50.0
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 3.8e-12 74.7 66 47.0
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 6.6e-12 73.9 67 52.2
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 6.6e-12 73.9 73 45.2
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.6e-12 73.6 69 47.8
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 1.9e-11 72.4 69 44.9
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.9e-11 72.4 69 44.9
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 1.9e-11 72.4 68 44.1
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 1.9e-11 72.4 69 44.9
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 1.9e-11 72.4 69 44.9
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 1.9e-11 72.4 68 44.1
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 3.3e-11 71.6 69 44.9
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.3e-11 71.6 69 46.4
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 5.5e-11 70.9 70 44.3
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.2e-10 69.7 70 42.9
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.2e-10 69.7 68 42.6
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 2.1e-10 68.9 68 42.6
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 2.1e-10 68.9 73 45.2
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 2.8e-10 68.6 69 43.5
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 2.8e-10 68.6 68 42.6
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.8e-10 68.6 51 58.8
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 3.6e-10 68.2 70 42.9
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 3.6e-10 68.2 68 42.6
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 4.7e-10 67.8 68 41.2
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 6.1e-10 67.4 82 46.3
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 8.0e-10 67.0 67 47.8
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 1.4e-09 66.2 70 40.0
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-09 66.2 71 50.7
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.8e-09 65.9 67 43.3
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 2.3e-09 65.5 67 47.8
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.3e-09 65.5 49 59.2
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 3.0e-09 65.1 73 41.1
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 8.9e-09 63.5 64 46.9
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-08 62.4 49 57.1
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.6e-08 62.0 79 45.6
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.6e-08 62.0 79 45.6
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 2.6e-08 62.0 73 41.1
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 3.4e-08 61.6 64 48.4
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.7e-07 59.3 65 47.7
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 1.8e-06 55.8 65 44.6
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 3.1e-06 55.1 61 47.5


User provided reference genes

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