Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 0.0e+00 1332.0 664 100.0
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 4.8e-288 994.2 670 76.9
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 4.2e-284 981.1 673 75.0
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 1.6e-283 979.2 687 73.9
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 7.5e-281 970.3 662 74.8
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 1.6e-278 962.6 665 74.0
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 5.5e-276 954.1 664 73.5
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 1.6e-275 952.6 662 72.8
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 1.2e-270 936.4 665 72.9
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 1.2e-270 936.4 641 75.0
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 5.9e-270 934.1 667 71.7
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 7.7e-270 933.7 667 72.7
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 9.5e-268 926.8 664 71.5
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 2.8e-267 925.2 664 71.4
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 4.7e-267 924.5 664 71.1
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 4.7e-267 924.5 664 71.2
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 8.9e-266 920.2 665 72.0
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 7.5e-265 917.1 662 70.4
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 1.6e-262 909.4 743 66.1
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 5.0e-261 904.4 669 69.5
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 5.0e-261 904.4 710 67.2
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 3.7e-256 888.3 666 68.3
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 3.2e-255 885.2 667 70.0
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 8.6e-253 877.1 663 67.9
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 3.6e-251 871.7 664 67.2
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 6.8e-250 867.5 625 71.8
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 1.5e-249 866.3 664 66.3
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 7.5e-249 864.0 660 67.6
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 7.5e-249 864.0 661 67.6
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 4.9e-248 861.3 684 65.6
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 1.2e-246 856.7 675 65.9
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 8.1e-243 844.0 662 65.3
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 2.9e-240 835.5 622 69.1
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 3.7e-240 835.1 774 60.7
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.2e-238 830.1 659 64.8
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 6.6e-237 824.3 677 65.6
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 3.6e-235 818.5 662 64.8
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 2.9e-232 808.9 669 62.9
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 1.9e-231 806.2 702 61.4
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 1.0e-229 800.4 668 65.4
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 8.1e-227 790.8 556 72.3
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 1.5e-225 786.6 663 63.0
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 3.8e-224 781.9 689 63.1
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 6.4e-224 781.2 525 75.8
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 8.4e-224 780.8 551 72.4
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 7.1e-223 777.7 526 75.9
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 6.0e-222 774.6 637 64.1
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 1.1e-215 753.8 671 60.8
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 5.4e-215 751.5 671 61.8
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.7e-214 749.2 695 60.1
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.5e-214 748.8 695 60.0
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 4.6e-214 748.4 661 60.8
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 4.5e-209 731.9 572 65.4
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 1.2e-206 723.8 665 60.9
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 5.1e-205 718.4 667 60.0
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 2.0e-201 706.4 705 57.4
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.2e-199 699.1 725 56.0
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 2.2e-195 686.4 498 71.7
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 1.4e-189 667.2 571 62.9
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 4.1e-186 655.6 504 68.1
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 5.3e-186 655.2 514 68.7
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 4.2e-183 645.6 672 49.7
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 3.7e-179 632.5 479 68.5
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 1.5e-175 620.5 472 66.9
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 2.3e-173 613.2 475 68.0
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 2.3e-173 613.2 556 60.4
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 2.2e-171 606.7 487 67.6
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 1.6e-169 600.5 417 73.4
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 4.5e-169 599.0 502 65.7
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 1.3e-168 597.4 335 84.5
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 1.1e-167 594.3 446 70.0
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 2.1e-166 590.1 417 70.7
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.0e-165 585.9 470 67.0
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.1e-162 577.8 470 66.6
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 9.8e-156 554.7 479 62.2
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 1.8e-154 550.4 548 58.4
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 1.5e-140 504.2 287 81.9
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 2.2e-139 500.4 668 43.6
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 4.4e-132 476.1 666 42.6
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 7.5e-132 475.3 473 55.6
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 1.5e-124 451.1 660 40.2
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 7.8e-121 438.7 244 85.2
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.5e-103 380.6 258 72.9
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 4.6e-89 333.2 285 63.2
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 7.6e-84 315.8 301 60.5
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 3.8e-75 287.0 163 85.3
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 2.5e-74 284.3 277 52.7
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 4.2e-74 283.5 152 88.8
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 3.6e-73 280.4 168 78.6
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 4.6e-73 280.0 163 82.2
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 3.3e-71 273.9 163 79.1
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 6.5e-67 259.6 345 44.6
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 3.0e-64 250.8 180 69.4
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.1e-63 248.8 616 31.8
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 9.7e-63 245.7 247 57.5
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 1.7e-62 245.0 164 71.3
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 2.2e-59 234.6 164 69.5
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 2.9e-59 234.2 164 67.7
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 1.9e-58 231.5 164 67.7
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 5.5e-58 229.9 169 68.0
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 5.5e-58 229.9 164 66.5
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 7.2e-58 229.6 131 84.0
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 5.2e-56 223.4 163 63.2
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 4.4e-55 220.3 165 63.6
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 2.7e-52 211.1 115 84.3
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 1.0e-48 199.1 102 89.2
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 3.0e-48 197.6 133 76.7
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 4.0e-48 197.2 133 76.7
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 8.8e-48 196.1 100 90.0
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 2.2e-46 191.4 163 60.7
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 1.0e-43 182.6 163 56.4
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 2.2e-43 181.4 130 64.6
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 1.1e-42 179.1 130 70.0
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 2.8e-41 174.5 869 24.1
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 1.0e-40 172.6 101 82.2
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 4.4e-39 167.2 90 87.8
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 1.2e-36 159.1 212 49.5
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 1.2e-36 159.1 114 75.4
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 9.5e-34 149.4 137 53.3
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.2e-28 132.5 78 79.5
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.6e-25 120.9 68 83.8
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 3.6e-25 120.9 198 32.8
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 8.0e-25 119.8 68 80.9
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 3.1e-24 117.9 77 75.3
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 7.8e-20 103.2 69 65.2
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 3.4e-15 87.8 57 64.9
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 3.7e-14 84.3 56 67.9
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 2.7e-12 78.2 60 63.3
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 1.9e-10 72.0 51 56.9
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 4.3e-10 70.9 324 22.8
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 9.5e-10 69.7 41 78.0
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 4.7e-09 67.4 318 22.6
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 4.7e-09 67.4 88 46.6
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 5.2e-08 63.9 182 30.8
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 5.2e-08 63.9 350 20.6
Hma1.2p1_0672F.1_g200870 Hydrangea macrophylla HOM05D005151 ORTHO05D006322 6.8e-08 63.5 212 25.5
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 8.9e-08 63.2 88 44.3
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 1.2e-07 62.8 88 44.3
Cfa018843 Carpinus fangiana HOM05D002332 ORTHO05D002509 1.5e-07 62.4 254 26.4
ECA233G2827 Erigeron canadensis HOM05D000836 ORTHO05D000709 2.0e-07 62.0 225 25.3
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 2.0e-07 62.0 350 20.6
Lj1g0017617 Lotus japonicus HOM05D005813 ORTHO05D007310 2.0e-07 62.0 371 21.6
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 2.0e-07 62.0 57 56.1
CSS0038194 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.6e-07 61.6 38 76.3
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 5.8e-07 60.5 65 50.8
GSVIVG01035793001 Vitis vinifera HOM05D000836 ORTHO05D000709 5.8e-07 60.5 223 23.8
FAN24G1350 Fragaria x ananassa HOM05D000836 ORTHO05D000709 7.6e-07 60.1 223 23.3
CSS0035081 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 9.9e-07 59.7 38 73.7
CSS0045499 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 9.9e-07 59.7 38 73.7
Haze_07236 Corylus avellana HOM05D002332 ORTHO05D002509 9.9e-07 59.7 182 28.6
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 9.9e-07 59.7 229 23.6
VMungo1383G1345 Vigna mungo HOM05D005813 ORTHO05D007310 9.9e-07 59.7 348 21.0
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 1.3e-06 59.3 221 24.0
BraA09t41176Z Brassica rapa HOM05D004736 ORTHO05D006424 2.2e-06 58.5 232 25.0
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 2.2e-06 58.5 231 22.5
QL10p004201 Quercus lobata HOM05D002332 ORTHO05D002509 2.2e-06 58.5 173 28.3
Dinv04870 Davidia involucrata HOM05D002332 ORTHO05D002509 2.9e-06 58.2 181 24.9
Glyma.18G275100 Glycine max HOM05D002332 ORTHO05D002509 2.9e-06 58.2 183 26.2
TWI39G1032 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 2.9e-06 58.2 175 26.3
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 8.4e-06 56.6 326 22.1
RcHm_v2.0_Chr7g0190461 Rosa chinensis HOM05D002332 ORTHO05D002509 8.4e-06 56.6 200 25.5


User provided reference genes

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