Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 1.5e-161 572.8 288 100.0
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 3.6e-131 471.9 318 73.9
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 3.1e-130 468.8 306 76.5
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 5.2e-130 468.0 315 73.3
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 1.5e-129 466.5 311 74.3
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 2.0e-129 466.1 309 74.4
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 2.9e-128 462.2 302 76.8
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 2.4e-127 459.1 311 73.0
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 3.2e-127 458.8 311 73.0
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 4.1e-127 458.4 314 74.5
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 7.1e-127 457.6 316 72.5
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 2.1e-126 456.1 311 72.7
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 2.7e-126 455.7 313 72.2
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.0e-125 453.8 328 69.8
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 1.3e-125 453.4 301 73.4
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 5.1e-125 451.4 318 72.0
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 6.6e-125 451.1 324 71.3
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.1e-124 450.3 316 70.9
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 1.5e-124 449.9 309 72.5
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.5e-124 449.9 299 75.6
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 7.3e-124 447.6 318 70.1
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 1.6e-123 446.4 313 71.2
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 1.6e-123 446.4 293 75.4
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 2.8e-123 445.7 315 73.3
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 3.6e-123 445.3 312 70.2
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 3.6e-123 445.3 313 71.6
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 4.7e-123 444.9 308 72.1
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 4.7e-123 444.9 315 70.2
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 2.3e-122 442.6 303 73.3
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 2.3e-122 442.6 310 70.3
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 3.1e-122 442.2 320 69.7
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 4.0e-122 441.8 320 69.1
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 4.0e-122 441.8 320 69.1
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 4.0e-122 441.8 320 69.1
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 5.2e-122 441.4 313 70.9
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 5.2e-122 441.4 315 70.8
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 6.8e-122 441.0 309 72.2
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 8.9e-122 440.7 298 72.1
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 1.5e-121 439.9 303 70.6
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 2.6e-121 439.1 304 72.4
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 2.6e-121 439.1 310 70.6
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 3.4e-121 438.7 312 71.2
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 7.6e-121 437.6 296 73.0
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 2.2e-120 436.0 310 70.3
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 3.7e-120 435.3 314 69.1
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.1e-119 433.7 306 71.2
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 1.4e-119 433.3 319 67.7
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.4e-119 433.3 299 71.6
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.4e-119 433.3 314 70.1
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.9e-119 433.0 315 69.8
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.4e-119 432.6 314 69.4
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 7.1e-119 431.0 310 70.3
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 1.6e-118 429.9 314 70.4
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 2.7e-118 429.1 315 68.3
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 2.7e-118 429.1 304 70.4
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 3.5e-118 428.7 309 67.3
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 3.5e-118 428.7 314 69.4
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 1.3e-117 426.8 302 69.2
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 1.3e-117 426.8 311 68.8
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 1.7e-117 426.4 315 68.3
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 3.9e-117 425.2 306 69.9
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 3.9e-117 425.2 299 70.2
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 3.9e-117 425.2 299 69.9
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 5.1e-117 424.9 312 67.9
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 5.1e-117 424.9 302 68.9
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 6.6e-117 424.5 309 67.6
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 8.6e-117 424.1 307 69.1
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 1.1e-116 423.7 282 74.8
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 1.9e-116 422.9 306 70.3
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 9.6e-116 420.6 299 69.2
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 9.6e-116 420.6 315 67.6
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.4e-114 416.8 310 66.8
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 1.4e-114 416.8 312 68.6
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 2.0e-113 412.9 318 67.3
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 1.7e-112 409.8 340 62.6
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 4.9e-112 408.3 319 66.5
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 7.1e-111 404.4 306 65.0
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 1.2e-110 403.7 314 65.0
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 2.7e-110 402.5 310 65.5
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 3.5e-110 402.1 312 64.7
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 6.0e-110 401.4 308 64.0
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 2.3e-109 399.4 314 64.0
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 3.0e-109 399.1 315 63.8
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 3.0e-109 399.1 314 64.6
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 6.6e-109 397.9 306 64.1
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 8.7e-109 397.5 314 63.7
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 4.3e-108 395.2 333 62.2
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 1.6e-107 393.3 317 64.4
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 1.2e-105 387.1 307 65.8
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 1.7e-104 383.3 308 61.7
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 1.4e-103 380.2 329 59.9
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.0e-101 374.0 377 54.9
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 1.9e-100 369.8 308 63.0
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 8.1e-99 364.4 301 63.8
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 2.6e-97 359.4 315 59.7
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 9.9e-97 357.5 251 70.1
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 8.4e-96 354.4 285 60.4
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 7.1e-95 351.3 273 65.2
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 9.3e-95 350.9 308 60.1
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 7.9e-94 347.8 302 57.6
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 1.5e-92 343.6 226 73.5
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 5.6e-92 341.7 286 59.1
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 4.8e-91 338.6 284 58.1
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 6.2e-91 338.2 307 55.7
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.0e-89 333.2 231 72.3
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 6.7e-77 291.6 229 65.1
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 2.4e-74 283.1 184 76.6
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 6.9e-74 281.6 185 75.1
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 9.0e-74 281.2 354 43.8
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 2.5e-71 273.1 235 58.3
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 1.0e-69 267.7 337 46.0
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.5e-65 253.8 197 62.9
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 1.0e-61 241.1 191 61.8
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.9e-55 220.3 211 59.7
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 1.8e-53 213.8 211 51.7
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 3.5e-49 199.5 262 43.9
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 2.5e-47 193.4 131 68.7
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.5e-44 184.1 204 53.4
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.3e-43 181.0 108 80.6
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 1.2e-41 174.5 276 42.4
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 1.3e-40 171.0 101 76.2
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 9.5e-39 164.9 291 36.4
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 1.8e-34 150.6 123 63.4
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 3.7e-27 126.3 121 61.2
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 3.3e-23 113.2 164 46.3
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 8.0e-22 108.6 83 63.9
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.4e-21 107.8 73 74.0
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 8.9e-21 105.1 121 54.5
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 2.0e-20 104.0 70 71.4
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 7.5e-20 102.1 67 71.6
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.3e-19 101.3 74 64.9
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 3.7e-19 99.8 115 47.8
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 1.1e-18 98.2 70 75.7
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.1e-18 98.2 119 42.0
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 6.0e-17 92.4 89 56.2
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.9e-15 87.4 60 70.0
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.1e-14 84.0 50 82.0
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.1e-13 81.6 83 54.2
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 2.6e-12 77.0 118 41.5
Actinidia30088 Actinidia chinensis HOM05D005470 ORTHO05D057321 8.1e-06 55.5 44 68.2


User provided reference genes

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