Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.1e-122 443.4 221 100.0
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.3e-61 239.6 141 80.9
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.3e-59 233.8 132 84.1
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.8e-58 229.9 149 76.5
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 2.4e-58 229.6 132 80.3
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 5.3e-58 228.4 128 82.0
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.2e-57 227.3 140 80.7
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 2.0e-57 226.5 128 82.0
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 3.5e-57 225.7 126 85.7
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 3.5e-57 225.7 126 85.7
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 4.5e-57 225.3 126 85.7
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 5.9e-57 224.9 135 78.5
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 5.9e-57 224.9 132 81.1
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 7.7e-57 224.6 128 82.8
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.0e-56 224.2 133 78.9
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.7e-56 223.4 132 80.3
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 2.2e-56 223.0 155 71.0
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 2.2e-56 223.0 140 76.4
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 5.0e-56 221.9 128 79.7
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 5.0e-56 221.9 134 79.9
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 6.5e-56 221.5 128 80.5
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.5e-55 220.3 131 78.6
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 1.9e-55 219.9 130 83.1
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 1.9e-55 219.9 127 83.5
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 3.2e-55 219.2 141 75.2
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 3.2e-55 219.2 186 63.4
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 4.2e-55 218.8 137 77.4
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 5.5e-55 218.4 134 76.1
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 5.5e-55 218.4 125 80.8
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 5.5e-55 218.4 128 82.8
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 1.6e-54 216.9 129 77.5
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 2.1e-54 216.5 140 73.6
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 8.0e-54 214.5 132 76.5
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.0e-54 214.5 134 76.1
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.0e-53 214.2 134 76.1
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.0e-53 214.2 134 76.1
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.0e-53 214.2 139 72.7
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.4e-53 213.8 126 81.0
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.4e-53 213.8 126 78.6
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.8e-53 213.4 131 80.9
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 2.3e-53 213.0 131 77.9
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 3.0e-53 212.6 132 78.0
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 3.0e-53 212.6 130 80.0
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.0e-53 212.2 126 80.2
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.0e-53 212.2 148 69.6
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 5.2e-53 211.8 126 78.6
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 6.8e-53 211.5 133 75.2
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.8e-53 211.1 134 75.4
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.2e-52 210.7 126 80.2
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.6e-52 209.5 130 76.9
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 2.6e-52 209.5 127 78.7
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.4e-52 209.1 133 75.9
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 5.7e-52 208.4 130 76.2
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 5.7e-52 208.4 124 79.0
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 5.7e-52 208.4 126 79.4
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 9.8e-52 207.6 130 76.2
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.7e-51 206.8 126 79.4
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.7e-51 206.8 125 79.2
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 3.7e-51 205.7 129 74.4
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 3.7e-51 205.7 132 74.2
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 4.8e-51 205.3 133 72.9
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 4.8e-51 205.3 123 76.4
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 8.3e-51 204.5 130 73.8
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.1e-50 204.1 126 77.8
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 1.4e-50 203.8 128 78.1
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 2.4e-50 203.0 132 72.7
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 5.4e-50 201.8 132 74.2
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 9.1e-50 201.1 129 73.6
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 2.7e-49 199.5 129 72.9
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 5.9e-49 198.4 127 73.2
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 1.0e-48 197.6 126 76.2
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.3e-48 197.2 136 69.9
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.3e-48 197.2 132 71.2
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.3e-48 197.2 128 74.2
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 2.2e-48 196.4 120 76.7
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 5.0e-48 195.3 128 73.4
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 8.5e-48 194.5 126 73.0
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 1.5e-47 193.7 135 71.1
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.9e-47 193.4 134 70.9
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 5.5e-47 191.8 134 70.9
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 5.5e-47 191.8 116 78.4
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 7.2e-47 191.4 128 71.9
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.7e-46 189.5 122 74.6
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 2.7e-46 189.5 127 73.2
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 4.7e-46 188.7 122 77.0
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 8.0e-46 188.0 128 70.3
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 2.3e-45 186.4 131 64.1
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 6.8e-45 184.9 128 71.9
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 8.8e-45 184.5 125 66.4
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 1.5e-44 183.7 127 70.1
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.5e-44 183.7 119 72.3
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 3.4e-44 182.6 123 71.5
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 5.7e-44 181.8 118 72.0
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 7.5e-44 181.4 119 73.9
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 1.3e-43 180.6 125 65.6
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 1.3e-43 180.6 131 61.8
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 2.2e-43 179.9 116 75.0
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 2.8e-43 179.5 128 70.3
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 2.8e-43 179.5 120 73.3
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 3.7e-43 179.1 127 66.1
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 3.7e-43 179.1 119 71.4
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.9e-43 178.7 127 66.1
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 4.9e-43 178.7 119 70.6
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 4.9e-43 178.7 121 66.9
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 8.3e-43 177.9 109 77.1
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 8.3e-43 177.9 124 65.3
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 8.3e-43 177.9 120 70.0
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.1e-42 177.6 123 69.1
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-42 177.6 120 65.0
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.4e-42 177.2 123 69.9
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.4e-42 176.4 123 69.1
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.4e-42 175.3 107 80.4
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 7.0e-42 174.9 135 60.7
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.0e-41 173.3 118 71.2
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 7.7e-41 171.4 164 55.5
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.0e-40 171.0 119 67.2
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.7e-40 170.2 136 60.3
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.7e-40 170.2 132 61.4
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.3e-40 169.9 118 69.5
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.9e-40 169.5 132 61.4
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.9e-40 169.5 108 72.2
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 4.7e-38 162.2 133 61.7
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 4.7e-38 162.2 129 57.4
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 6.1e-38 161.8 139 56.8
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.0e-37 161.0 119 65.5
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.8e-37 160.2 135 57.8
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 2.3e-37 159.8 129 64.3
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 2.3e-37 159.8 126 65.1
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.2e-36 157.5 118 65.3
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.2e-36 157.5 118 65.3
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.2e-36 157.5 118 65.3
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.5e-36 157.1 120 63.3
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.5e-36 157.1 127 60.6
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.0e-36 156.8 124 62.9
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 4.4e-36 155.6 125 60.8
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 4.4e-36 155.6 124 61.3
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 5.7e-36 155.2 116 62.9
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.7e-35 153.7 123 61.0
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 1.7e-35 153.7 119 62.2
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 2.9e-35 152.9 138 54.3
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 3.7e-35 152.5 118 61.9
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 3.7e-35 152.5 138 54.3
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 6.4e-35 151.8 118 61.0
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 6.4e-35 151.8 99 74.7
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 6.4e-35 151.8 117 64.1
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 1.4e-34 150.6 125 58.4
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.4e-34 150.6 122 61.5
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.8e-34 150.2 125 58.4
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 1.8e-34 150.2 121 62.8
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 1.8e-34 150.2 121 62.8
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 1.8e-34 150.2 122 58.2
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 5.4e-34 148.7 127 58.3
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 5.4e-34 148.7 123 56.9
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 4.6e-33 145.6 128 60.9
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 7.8e-33 144.8 123 59.3
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.2e-30 137.5 127 54.3
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 8.9e-29 131.3 119 54.6
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.2e-26 122.9 66 81.8
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 3.2e-26 122.9 79 75.9
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.3e-24 117.5 75 72.0
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.8e-22 109.8 82 69.5
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 2.3e-21 106.7 65 78.5
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.0e-20 103.6 64 79.7
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.0e-20 103.6 64 79.7
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 3.4e-20 102.8 62 82.3
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 7.5e-20 101.7 64 78.1
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 2.2e-19 100.1 63 76.2
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 1.4e-18 97.4 112 42.9
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 2.4e-18 96.7 53 77.4
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.5e-15 87.4 53 77.4
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.9e-15 87.0 64 68.8
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 5.6e-15 85.5 51 80.4
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 9.5e-15 84.7 121 39.7
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.6e-14 84.0 68 54.4
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.1e-13 81.3 59 67.8
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.9e-10 70.5 68 58.8
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.3e-08 63.5 64 53.1
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 3.3e-07 59.7 36 69.4
arahy.Tifrunner.gnm1.ann1.P0I4D3 Arachis hypogaea HOM05D003887 ORTHO05D004523 9.6e-07 58.2 37 75.7
HanXRQChr02g0053341 Helianthus annuus HOM05D003887 ORTHO05D048295 2.8e-06 56.6 37 67.6


User provided reference genes

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