Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1360.1 634 100.0
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1185.6 630 85.6
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1177.5 630 85.9
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1177.2 653 82.7
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1171.8 633 85.3
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1168.7 610 86.9
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1168.7 637 82.9
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1167.5 627 85.2
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1166.0 630 85.2
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1163.7 631 84.9
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1160.2 633 84.0
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1157.1 632 83.9
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1155.2 630 83.8
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1154.4 630 83.8
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1147.1 628 82.5
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1145.2 650 81.5
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 0.0e+00 1142.1 628 82.0
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1139.8 604 85.6
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 0.0e+00 1139.4 609 86.0
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1138.6 628 82.6
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1138.3 640 82.2
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 0.0e+00 1137.5 609 85.9
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 0.0e+00 1135.6 628 82.6
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1135.6 604 84.6
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 0.0e+00 1133.6 629 81.7
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 0.0e+00 1132.9 630 83.0
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 0.0e+00 1132.5 634 82.8
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 0.0e+00 1132.5 614 82.7
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1130.5 604 84.9
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1129.8 609 83.9
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 0.0e+00 1129.4 635 81.7
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 0.0e+00 1128.6 635 81.1
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1128.2 609 83.9
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 0.0e+00 1127.5 625 82.6
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 0.0e+00 1127.1 633 81.7
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1126.7 630 80.6
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 0.0e+00 1125.9 601 84.9
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 0.0e+00 1124.0 604 84.3
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 0.0e+00 1123.6 610 83.6
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 0.0e+00 1121.7 604 84.3
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 0.0e+00 1120.9 634 80.9
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 0.0e+00 1119.4 605 84.5
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 0.0e+00 1116.7 610 82.8
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 0.0e+00 1116.3 601 84.0
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1113.2 634 79.7
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1112.1 633 80.6
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 0.0e+00 1111.3 628 80.6
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 0.0e+00 1110.9 638 79.2
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 0.0e+00 1110.9 636 80.2
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1109.4 625 80.3
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 0.0e+00 1099.0 603 84.1
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 0.0e+00 1093.6 768 68.9
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 0.0e+00 1092.0 630 79.5
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 0.0e+00 1091.6 653 76.1
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1087.0 606 82.3
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 0.0e+00 1083.2 629 77.9
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1082.8 610 79.7
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1080.5 609 79.1
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1080.1 610 79.3
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 0.0e+00 1080.1 845 62.5
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 0.0e+00 1079.7 589 84.0
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1077.8 609 79.0
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1077.8 609 79.0
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 0.0e+00 1077.8 627 79.4
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1077.4 609 79.0
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1077.4 609 79.0
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.3e-312 1073.5 737 70.1
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 1.3e-311 1072.4 637 76.3
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 2.2e-311 1071.6 609 79.5
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 3.0e-311 1071.2 609 79.6
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 2.5e-310 1068.1 629 77.4
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 3.3e-310 1067.8 629 77.3
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 7.3e-310 1066.6 628 77.2
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 1.2e-309 1065.8 678 74.3
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 1.6e-309 1065.4 637 76.0
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 6.2e-309 1063.5 595 79.8
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 1.2e-307 1059.3 627 78.8
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 6.4e-306 1053.5 604 77.6
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 1.6e-301 1038.9 628 74.7
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.7e-298 1028.9 665 73.2
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 1.9e-297 1025.4 604 78.8
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 6.0e-296 1020.4 556 84.0
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.9e-295 1017.7 665 72.8
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 9.9e-291 1003.0 609 76.2
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 2.1e-288 995.3 596 76.7
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 2.5e-286 988.4 559 81.2
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 1.2e-283 979.5 576 79.3
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 1.5e-283 979.2 542 83.4
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 9.9e-283 976.5 541 83.5
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 2.0e-275 952.2 539 82.6
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 2.2e-274 948.7 604 73.7
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 4.2e-273 944.5 553 78.7
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 1.0e-271 939.9 549 77.2
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 3.9e-271 937.9 629 70.4
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 3.9e-271 937.9 562 77.8
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 5.3e-268 927.5 640 68.8
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 6.9e-268 927.2 571 75.5
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.4e-263 912.9 608 72.0
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 1.1e-249 866.7 627 63.3
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.0e-247 860.1 603 68.8
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 1.1e-244 850.1 606 62.7
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.0e-239 833.6 635 61.3
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.3e-229 800.0 605 60.8
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 9.5e-225 783.9 491 72.9
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 9.5e-217 757.3 557 62.3
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 2.2e-213 746.1 448 78.3
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.2e-203 713.8 410 79.5
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 5.8e-198 694.9 462 71.6
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 1.5e-193 680.2 381 81.9
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 9.9e-182 641.0 434 70.3
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 4.9e-181 638.6 353 84.4
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 2.0e-134 483.8 246 86.2
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 5.3e-127 459.1 463 52.3
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 9.1e-119 431.8 258 79.1
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 7.8e-94 349.0 202 79.7
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.3e-85 321.6 188 73.9
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 3.7e-80 303.5 147 92.5
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 8.4e-72 275.8 178 73.0
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 5.8e-65 253.1 122 91.8
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 2.3e-61 241.1 135 78.5
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 8.7e-53 212.6 160 60.0
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 4.3e-52 210.3 340 37.1
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 8.1e-51 206.1 155 60.0
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 3.0e-45 187.6 121 69.4
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 2.5e-44 184.5 105 80.0
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 8.4e-40 169.5 83 88.0
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 4.1e-34 150.6 103 71.8
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 9.0e-34 149.4 87 75.9
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 5.0e-32 143.7 87 74.7
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 5.0e-32 143.7 87 74.7
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.8e-29 135.2 149 49.7
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 3.3e-28 131.0 73 79.5
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 2.8e-27 127.9 229 34.9
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 9.4e-23 112.8 79 70.9
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.7e-22 111.3 82 68.3
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 1.5e-20 105.5 306 25.5
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 7.4e-20 103.2 205 28.8
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.3e-19 102.4 78 61.5
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 1.3e-19 102.4 51 84.3
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 2.2e-19 101.7 208 27.4
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.7e-19 100.9 56 76.8
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.7e-19 100.9 56 76.8
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.8e-18 98.6 79 59.5
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.4e-18 98.2 78 59.0
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 5.3e-18 97.1 138 40.6
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 7.7e-17 93.2 79 58.2
CAN.G862.26 Capsicum annuum HOM05D001762 ORTHO05D001774 1.3e-16 92.4 204 28.4
Nitab4.5_0002072g0080 Nicotiana tabacum HOM05D001762 ORTHO05D001774 2.9e-16 91.3 205 28.8
Solyc03g121960.3 Solanum lycopersicum HOM05D001762 ORTHO05D001774 2.9e-16 91.3 204 27.9
PGSC0003DMG400002483 Solanum tuberosum HOM05D001762 ORTHO05D001774 2.9e-16 91.3 204 27.9
Nitab4.5_0002879g0120 Nicotiana tabacum HOM05D001762 ORTHO05D001774 3.8e-16 90.9 205 28.8
Sopen03g040780 Solanum pennellii HOM05D001762 ORTHO05D001774 3.8e-16 90.9 204 27.9
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.1e-15 89.4 73 58.9
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.1e-15 89.4 73 58.9
Hund05747 Selenicereus undatus HOM05D001762 ORTHO05D001774 1.5e-15 89.0 184 29.9
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 4.2e-15 87.4 56 69.6
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 6.3e-11 73.6 34 82.4


User provided reference genes

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