Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 1.7e-161 572.8 316 100.0
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 6.5e-134 481.1 310 80.6
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.2e-132 476.9 314 79.3
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 6.1e-132 474.6 315 80.3
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 3.0e-131 472.2 314 78.7
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 2.2e-129 466.1 316 78.5
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 2.2e-129 466.1 316 78.5
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 6.3e-129 464.5 311 80.1
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.8e-128 463.0 310 81.0
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 5.4e-128 461.5 316 78.2
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 5.4e-128 461.5 315 79.0
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 5.4e-128 461.5 311 77.2
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 1.2e-127 460.3 315 76.2
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 3.5e-127 458.8 302 83.8
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 4.5e-127 458.4 314 77.4
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 5.9e-127 458.0 309 79.6
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 2.9e-126 455.7 310 78.4
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 3.8e-126 455.3 311 81.7
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 2.5e-125 452.6 307 77.2
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 2.5e-125 452.6 301 79.7
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 5.5e-125 451.4 315 77.1
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 4.7e-124 448.4 312 81.1
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 6.1e-124 448.0 307 76.9
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 6.1e-124 448.0 307 76.9
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 1.0e-123 447.2 311 74.9
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 1.4e-123 446.8 309 74.8
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 2.3e-123 446.0 310 76.8
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 2.3e-123 446.0 302 83.8
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 5.2e-123 444.9 302 83.1
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 1.2e-122 443.7 316 78.2
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 1.5e-122 443.4 309 76.7
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.5e-122 443.4 301 76.4
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 1.3e-121 440.3 311 76.5
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 1.7e-121 439.9 310 73.9
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 2.2e-121 439.5 302 77.5
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 2.8e-121 439.1 306 75.8
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 6.3e-121 438.0 314 73.6
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 8.3e-121 437.6 310 73.5
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 8.3e-121 437.6 291 82.8
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 1.1e-120 437.2 309 80.3
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 1.1e-120 437.2 306 80.4
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.4e-120 436.8 312 77.9
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.4e-120 436.8 310 72.6
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.4e-120 436.0 308 75.0
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.2e-120 435.6 310 74.8
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 4.1e-120 435.3 312 76.0
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 5.4e-120 434.9 310 75.2
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 5.4e-120 434.9 301 80.4
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 7.0e-120 434.5 308 75.0
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 9.2e-120 434.1 306 75.5
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 1.6e-119 433.3 302 79.1
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 2.0e-119 433.0 315 75.6
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 3.5e-119 432.2 309 78.6
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 7.8e-119 431.0 306 79.4
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 7.8e-119 431.0 298 80.2
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 7.8e-119 431.0 315 78.4
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.8e-119 431.0 315 78.1
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 7.8e-119 431.0 307 74.9
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 2.9e-118 429.1 305 77.7
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.9e-118 428.7 310 73.9
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.5e-117 426.8 322 77.3
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 1.5e-117 426.8 315 72.7
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.5e-117 426.8 316 72.8
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 5.6e-117 424.9 321 73.8
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 7.3e-117 424.5 310 73.2
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 9.5e-117 424.1 322 76.7
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 9.5e-117 424.1 326 70.9
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.2e-116 423.7 312 76.6
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 2.1e-116 422.9 307 78.2
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 2.1e-116 422.9 310 72.9
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 3.6e-116 422.2 310 72.9
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 4.7e-116 421.8 312 76.3
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 8.0e-116 421.0 306 77.1
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.0e-115 420.6 315 74.6
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 1.8e-115 419.9 300 78.0
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 3.1e-115 419.1 309 77.3
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 3.1e-115 419.1 304 77.0
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 5.2e-115 418.3 317 74.4
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 6.8e-115 417.9 304 78.6
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 8.9e-115 417.5 317 73.5
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 8.9e-115 417.5 307 76.5
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.4e-114 415.6 309 70.9
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 7.5e-114 414.5 308 76.3
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 7.5e-114 414.5 308 76.3
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.7e-113 413.3 307 76.2
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 2.2e-113 412.9 307 74.3
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 3.7e-113 412.1 308 76.3
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 4.9e-113 411.8 307 74.3
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 8.3e-113 411.0 304 77.3
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 8.3e-113 411.0 302 77.5
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 1.4e-112 410.2 312 73.7
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.9e-112 409.8 308 72.1
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 5.4e-112 408.3 308 71.8
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 1.2e-111 407.1 302 77.2
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 1.2e-111 407.1 308 75.3
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.0e-110 404.1 306 70.9
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.7e-110 403.3 312 74.0
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 2.3e-110 402.9 303 71.6
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 5.0e-110 401.7 308 75.0
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 6.6e-110 401.4 301 70.4
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 1.5e-109 400.2 300 75.0
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 1.5e-109 400.2 308 75.6
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 2.3e-107 392.9 291 76.3
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 5.2e-107 391.7 309 73.5
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 5.2e-107 391.7 310 73.2
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 9.8e-106 387.5 290 71.4
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 2.9e-105 386.0 310 67.7
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 4.1e-104 382.1 291 75.6
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 2.1e-103 379.8 293 75.8
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 3.5e-103 379.0 291 75.6
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 9.5e-101 370.9 306 67.6
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.2e-100 370.5 313 64.2
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 1.5e-98 363.6 244 77.5
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 7.1e-96 354.8 310 63.2
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.7e-94 350.1 316 64.2
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 5.1e-94 348.6 306 68.0
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 5.2e-91 338.6 311 61.4
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.2e-90 337.4 243 72.8
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 2.6e-82 309.7 219 73.5
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.7e-73 280.4 301 60.1
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.9e-73 278.9 302 59.3
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 3.3e-69 266.2 218 73.9
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 1.1e-64 251.1 241 64.3
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 4.6e-63 245.7 290 55.9
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 1.3e-62 244.2 225 61.3
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 8.7e-62 241.5 298 52.7
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 5.8e-58 228.8 296 54.1
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.6e-55 219.2 197 61.9
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 2.8e-52 209.9 261 50.6
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 1.4e-51 207.6 324 45.4
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 4.8e-44 182.6 321 40.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 3.1e-43 179.9 299 44.8
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 5.9e-42 175.6 127 70.9
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.9e-40 170.6 128 68.8
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 2.1e-39 167.2 287 38.3
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.4e-38 164.5 129 69.0
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 2.6e-37 160.2 311 42.1
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 9.7e-29 131.7 97 69.1
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 3.1e-27 126.7 221 39.4
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 4.1e-27 126.3 128 53.9
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 1.2e-26 124.8 94 69.1
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.0e-25 121.7 205 37.6
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 5.5e-24 115.9 180 43.9
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 5.5e-24 115.9 180 43.9
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 5.5e-24 115.9 180 43.9
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.2e-23 114.8 76 76.3
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.5e-21 107.8 69 76.8
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 3.4e-21 106.7 74 77.0
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 4.4e-21 106.3 164 40.9
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 6.3e-20 102.4 177 42.9
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 5.5e-16 89.4 84 60.7
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 1.6e-15 87.8 80 56.2
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 4.7e-15 86.3 71 66.2
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 1.0e-14 85.1 71 64.8
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 4.9e-12 76.3 112 42.9
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 3.6e-07 60.1 40 70.0
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.6e-07 60.1 96 39.6
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.3e-06 57.4 59 57.6


User provided reference genes

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