Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 1.3e-236 822.8 439 100.0
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 3.7e-159 565.5 433 69.3
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 3.7e-159 565.5 433 69.3
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 2.0e-157 559.7 440 68.4
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 2.2e-148 529.6 418 68.9
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 1.4e-147 526.9 442 64.7
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 4.2e-147 525.4 441 65.3
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 2.3e-145 519.6 437 65.2
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 1.5e-144 516.9 432 64.1
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 4.3e-144 515.4 437 65.2
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 7.4e-144 514.6 444 64.2
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 1.3e-143 513.8 439 63.3
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 1.7e-143 513.5 441 62.6
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 6.3e-143 511.5 440 64.1
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 6.9e-142 508.1 439 63.8
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 6.9e-142 508.1 442 63.6
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 2.6e-141 506.1 442 63.1
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 5.0e-140 501.9 441 63.3
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 1.9e-139 500.0 446 62.8
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 2.1e-138 496.5 444 62.2
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 6.1e-138 495.0 443 61.9
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 5.7e-136 488.4 439 61.0
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 1.3e-135 487.3 439 60.1
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 2.8e-135 486.1 425 59.5
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 3.1e-134 482.6 438 60.0
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 4.1e-134 482.3 440 60.7
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 7.0e-134 481.5 434 60.6
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 9.1e-134 481.1 441 60.3
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 9.1e-134 481.1 434 60.4
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 1.5e-133 480.3 431 60.6
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 5.9e-133 478.4 433 59.8
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 2.9e-132 476.1 427 60.7
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 6.7e-129 464.9 438 58.7
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 7.4e-128 461.5 436 57.8
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 1.7e-127 460.3 439 58.1
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 2.8e-127 459.5 441 58.0
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 4.1e-126 455.7 448 58.0
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 1.6e-125 453.8 442 57.0
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 3.5e-125 452.6 391 61.6
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 6.5e-124 448.4 428 57.9
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 8.5e-124 448.0 392 60.2
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 3.2e-123 446.0 440 56.4
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 4.7e-122 442.2 409 57.7
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 4.0e-121 439.1 411 57.2
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 4.0e-121 439.1 411 56.9
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 1.2e-120 437.6 435 57.2
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 3.4e-120 436.0 438 55.9
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 7.5e-120 434.9 411 56.7
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 1.3e-119 434.1 411 56.7
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 1.3e-119 434.1 415 55.7
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 2.8e-119 433.0 440 53.6
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 1.1e-118 431.0 440 54.3
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 9.1e-118 427.9 411 56.0
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 1.2e-117 427.6 392 57.1
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 2.7e-117 426.4 464 53.4
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.0e-116 424.5 446 54.0
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 2.9e-116 422.9 442 55.0
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 2.9e-116 422.9 439 54.2
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 5.0e-116 422.2 446 54.0
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 3.2e-115 419.5 431 53.1
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 9.4e-115 417.9 417 55.6
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 4.7e-114 415.6 445 53.3
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 5.2e-113 412.1 437 53.3
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 5.2e-113 412.1 446 53.6
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.5e-112 410.6 437 53.8
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 2.2e-111 406.8 354 63.6
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 2.8e-111 406.4 415 54.5
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 6.3e-111 405.2 367 58.3
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 8.3e-111 404.8 411 55.0
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 8.3e-111 404.8 430 53.5
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 1.8e-110 403.7 434 52.8
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 2.0e-109 400.2 353 60.3
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 3.5e-109 399.4 440 52.0
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 4.5e-109 399.1 474 49.4
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 7.7e-109 398.3 439 49.7
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 1.3e-108 397.5 415 52.5
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 1.1e-107 394.4 415 53.7
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 1.2e-106 391.0 435 51.3
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 2.8e-106 389.8 296 66.2
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 1.4e-102 377.5 429 50.1
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 7.8e-101 371.7 400 53.8
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 4.7e-98 362.5 356 61.5
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 1.0e-97 361.3 440 48.0
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 4.0e-97 359.4 344 61.6
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 1.7e-95 354.0 430 50.5
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 6.4e-95 352.1 440 48.6
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 1.6e-93 347.4 425 47.1
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 4.7e-90 335.9 375 50.7
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 4.7e-90 335.9 352 56.5
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 2.9e-87 326.6 434 44.7
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 7.1e-86 322.0 298 60.4
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 2.3e-81 307.0 435 45.5
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 7.8e-69 265.4 376 39.1
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 1.5e-64 251.1 238 59.7
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 2.0e-64 250.8 386 40.9
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 2.4e-62 243.8 414 34.3
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 4.2e-62 243.0 209 58.4
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 1.5e-59 234.6 393 36.6
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 1.9e-59 234.2 359 40.7
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 5.6e-51 206.1 202 51.0
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 7.6e-48 195.7 217 55.3
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 6.3e-34 149.4 199 43.2
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 7.4e-27 125.9 88 69.3
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.3e-23 115.2 120 55.0
CBR_g12374 Chara braunii HOM05D006834 ORTHO05D008623 1.8e-17 94.7 269 28.3
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 6.5e-15 86.3 65 60.0
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 3.6e-13 80.5 54 64.8
HPP92_010139 Vanilla planifolia HOM05D006834 ORTHO05D008623 4.7e-13 80.1 129 48.8
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.0e-12 79.0 65 55.4
Sc05g0000060 Simmondsia chinensis HOM05D006834 ORTHO05D008623 2.4e-09 67.8 98 44.9
SGA_v2.0_scaffold81G26073 Striga asiatica HOM05D006834 ORTHO05D008623 7.2e-06 56.2 45 55.6


User provided reference genes

Program Settings