Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 7.6e-286 986.5 503 100.0
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 2.8e-211 738.8 471 80.9
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 4.4e-209 731.5 469 81.0
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 5.4e-207 724.5 437 86.0
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.7e-206 722.2 465 80.0
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 6.0e-206 721.1 466 78.8
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 2.3e-205 719.2 467 78.4
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 9.5e-204 713.8 488 76.0
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 1.5e-201 706.4 466 77.0
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 3.4e-201 705.3 469 78.5
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 5.8e-201 704.5 466 77.0
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 1.3e-200 703.4 466 77.9
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.1e-199 700.3 467 78.2
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 6.0e-198 694.5 466 76.2
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 6.0e-198 694.5 467 78.2
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 1.7e-197 693.0 468 76.3
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 1.9e-196 689.5 466 74.9
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 1.6e-195 686.4 497 73.0
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 1.4e-194 683.3 466 74.5
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 2.6e-193 679.1 467 77.3
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.4e-191 673.3 466 73.6
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.2e-191 672.2 466 73.6
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.2e-190 670.2 466 73.2
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 2.7e-190 669.1 466 73.2
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 2.7e-190 669.1 468 73.7
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 6.6e-189 664.5 468 74.1
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 6.6e-189 664.5 466 73.0
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 8.7e-189 664.1 466 73.0
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 1.1e-188 663.7 490 73.1
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 3.6e-187 658.7 468 73.1
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 8.1e-187 657.5 466 74.0
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 2.4e-186 656.0 467 72.2
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 1.2e-185 653.7 457 73.7
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 1.2e-185 653.7 468 72.6
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 2.6e-185 652.5 466 72.5
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 1.7e-184 649.8 468 72.0
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 2.9e-184 649.0 468 72.6
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 1.9e-183 646.4 467 71.5
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 3.2e-183 645.6 470 71.9
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 5.4e-183 644.8 532 67.5
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 7.1e-183 644.4 467 71.3
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 6.0e-182 641.3 474 71.7
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 7.9e-182 641.0 467 72.6
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 1.1e-180 637.1 469 71.0
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 1.1e-180 637.1 469 71.4
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 1.1e-180 637.1 490 70.6
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.5e-180 636.7 467 70.2
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 5.6e-180 634.8 468 72.9
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 1.3e-179 633.6 488 68.2
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 4.8e-179 631.7 493 67.7
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 1.8e-178 629.8 470 70.6
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 4.0e-178 628.6 522 65.1
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 2.6e-177 625.9 480 69.8
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 3.8e-176 622.1 470 69.6
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.0e-173 614.0 479 68.1
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 4.8e-171 605.1 500 64.6
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 5.3e-170 601.7 467 69.2
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 1.9e-167 593.2 479 67.4
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 3.9e-165 585.5 502 62.9
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 2.5e-164 582.8 501 62.3
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.6e-163 580.1 470 67.7
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 6.3e-163 578.2 436 72.9
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 5.3e-162 575.1 505 61.4
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 5.3e-162 575.1 492 66.5
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 4.5e-161 572.0 467 66.0
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 1.7e-160 570.1 473 68.3
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 6.5e-160 568.2 497 63.4
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 3.6e-158 562.4 509 62.9
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 1.1e-156 557.4 480 65.2
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 3.1e-154 549.3 516 60.3
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.5e-153 547.0 419 70.6
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 8.5e-152 541.2 477 61.2
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 3.6e-150 535.8 491 60.9
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 3.9e-149 532.3 545 58.0
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 5.1e-149 531.9 477 62.1
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 5.1e-149 531.9 476 63.0
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 6.7e-149 531.6 477 63.5
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 2.6e-148 529.6 476 62.8
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 4.4e-148 528.9 464 62.9
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 5.7e-148 528.5 469 62.3
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 5.7e-148 528.5 545 57.4
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 1.7e-147 526.9 463 63.3
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 2.8e-147 526.2 477 63.1
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 3.1e-146 522.7 374 73.8
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 1.5e-145 520.4 483 60.0
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 1.7e-144 516.9 350 75.1
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 3.8e-144 515.8 480 63.1
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 1.1e-143 514.2 478 61.9
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 5.5e-143 511.9 485 61.0
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 4.4e-140 502.3 350 72.9
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 3.7e-139 499.2 535 54.6
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 2.4e-138 496.5 556 54.5
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 2.6e-137 493.0 483 60.0
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 1.0e-136 491.1 493 59.4
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 1.7e-136 490.3 487 59.3
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 2.1e-134 483.4 483 59.2
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.4e-133 480.7 319 78.4
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 3.0e-133 479.6 473 57.7
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 3.3e-132 476.1 519 53.8
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 4.4e-132 475.7 430 63.3
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 5.7e-132 475.3 515 54.0
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 7.5e-132 474.9 471 60.9
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 1.7e-131 473.8 507 56.6
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 1.0e-128 464.5 556 50.4
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 3.0e-125 453.0 318 72.6
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 4.0e-117 426.0 462 54.3
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 6.0e-105 385.6 258 79.8
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 2.9e-83 313.5 355 49.3
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.9e-82 310.8 216 74.1
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 9.3e-74 282.0 254 61.4
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 2.3e-72 277.3 207 69.6
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.1e-71 275.0 173 77.5
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 3.3e-71 273.5 207 68.6
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 9.0e-69 265.4 207 67.6
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 9.0e-69 265.4 269 55.4
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 2.7e-65 253.8 500 38.6
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 3.0e-64 250.4 366 42.9
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 3.9e-56 223.4 466 36.1
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.5e-55 220.7 512 34.4
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.8e-48 198.0 512 34.2
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 4.8e-46 189.9 428 36.0
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 1.3e-43 181.8 180 55.6
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 9.7e-39 165.6 509 31.4
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 2.8e-38 164.1 164 57.3
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 4.1e-37 160.2 137 62.0
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 5.3e-37 159.8 122 67.2
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 3.8e-35 153.7 424 32.1
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.0e-32 145.6 466 29.6
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.4e-29 135.2 116 62.9
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 1.8e-29 134.8 457 29.5
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 7.7e-20 102.8 95 63.2
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 6.5e-11 73.2 41 80.5
C06p28210 Brassica napus HOM05D005852 ORTHO05D041612 4.7e-09 67.0 60 63.3
BolC6t37987H Brassica oleracea HOM05D005852 ORTHO05D041612 4.7e-09 67.0 60 63.3
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 1.4e-08 65.5 85 52.9
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 6.3e-06 56.6 156 31.4


User provided reference genes

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