Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 2.8e-68 261.9 143 100.0
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 3.6e-47 191.8 142 74.6
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 6.8e-46 187.6 142 75.4
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 4.1e-43 178.3 143 72.7
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 2.7e-42 175.6 143 69.9
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 2.7e-42 175.6 144 72.9
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 7.7e-42 174.1 142 66.9
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 7.7e-42 174.1 143 70.6
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 1.0e-41 173.7 142 66.2
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 1.0e-41 173.7 143 70.6
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 2.3e-41 172.6 142 68.3
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 2.3e-41 172.6 143 71.3
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 2.9e-41 172.2 143 70.6
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 2.9e-41 172.2 143 69.2
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 5.0e-41 171.4 143 69.9
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 6.5e-41 171.0 142 66.9
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 8.6e-41 170.6 143 67.1
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 3.3e-40 168.7 143 68.5
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 4.2e-40 168.3 144 69.4
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 9.5e-40 167.2 143 68.5
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 1.6e-39 166.4 143 68.5
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 6.1e-39 164.5 143 65.7
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 8.0e-39 164.1 143 67.1
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 1.0e-38 163.7 143 67.1
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 1.0e-38 163.7 142 66.9
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 1.8e-38 162.9 146 67.8
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 2.3e-38 162.5 142 67.6
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 2.3e-38 162.5 143 66.4
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 6.8e-38 161.0 169 62.1
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 6.8e-38 161.0 145 64.8
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 1.2e-37 160.2 143 64.3
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 1.2e-37 160.2 165 60.0
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 1.5e-37 159.8 169 61.5
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.5e-37 159.8 142 68.3
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 1.5e-37 159.8 143 65.7
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 2.6e-37 159.1 131 70.2
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 4.4e-37 158.3 142 66.2
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 7.5e-37 157.5 143 66.4
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 9.8e-37 157.1 142 67.6
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 1.3e-36 156.8 143 65.7
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 1.3e-36 156.8 144 64.6
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 1.3e-36 156.8 142 66.9
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.7e-36 156.4 142 66.9
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 1.1e-35 153.7 143 65.7
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 1.6e-34 149.8 144 63.9
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 3.5e-34 148.7 132 66.7
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 3.5e-34 148.7 138 63.0
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 7.8e-34 147.5 142 60.6
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 7.8e-34 147.5 141 64.5
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 1.3e-33 146.7 138 63.0
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 6.6e-33 144.4 142 62.7
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 6.6e-33 144.4 139 62.6
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 2.5e-32 142.5 140 61.4
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 5.6e-32 141.4 132 62.1
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 1.2e-31 140.2 139 62.6
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 1.6e-31 139.8 121 61.2
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 2.8e-31 139.0 137 58.4
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 2.8e-31 139.0 141 61.0
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 6.1e-31 137.9 97 82.5
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 1.4e-30 136.7 135 62.2
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.8e-30 136.3 122 62.3
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 2.3e-30 136.0 135 60.7
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 2.3e-30 136.0 145 59.3
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 3.0e-30 135.6 121 62.8
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 5.2e-30 134.8 135 61.5
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 1.5e-29 133.3 138 59.4
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 1.5e-29 133.3 151 54.3
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 1.5e-29 133.3 124 64.5
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 3.4e-29 132.1 141 57.4
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 3.4e-29 132.1 124 63.7
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 4.4e-29 131.7 144 55.6
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 4.4e-29 131.7 122 63.1
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 5.8e-29 131.3 144 60.4
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 2.2e-28 129.4 137 59.9
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 2.2e-28 129.4 137 59.1
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 2.2e-28 129.4 142 56.3
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 3.7e-28 128.6 145 57.9
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 3.7e-28 128.6 148 55.4
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 1.1e-27 127.1 142 57.7
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 1.4e-27 126.7 121 62.8
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 1.4e-27 126.7 142 55.6
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 1.8e-27 126.3 135 58.5
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 4.1e-27 125.2 122 61.5
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 6.0e-26 121.3 144 52.1
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 7.8e-26 120.9 144 54.9
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 1.3e-25 120.2 89 77.5
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 5.0e-25 118.2 128 57.8
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 5.0e-25 118.2 89 75.3
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 6.6e-25 117.9 88 76.1
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 1.1e-24 117.1 90 74.4
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 2.8e-23 112.5 93 68.8
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 1.4e-22 110.2 89 70.8
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 5.2e-22 108.2 89 70.8
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 1.2e-21 107.1 134 54.5
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.5e-21 106.7 93 67.7
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 3.4e-21 105.5 132 54.5
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 3.4e-21 105.5 132 54.5
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 4.4e-21 105.1 132 54.5
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 9.8e-21 104.0 115 56.5
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 1.3e-20 103.6 132 53.8
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 1.3e-20 103.6 75 77.3
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 2.2e-20 102.8 121 56.2
Nn1g02998 Nelumbo nucifera HOM05D006603 ORTHO05D007786 8.3e-20 100.9 78 66.7
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 1.1e-19 100.5 132 53.0
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 7.0e-19 97.8 169 42.6
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 9.2e-19 97.4 86 64.0
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 1.6e-18 96.7 141 48.9
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 2.7e-18 95.9 119 50.4
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 2.7e-18 95.9 130 53.1
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 2.7e-18 95.9 75 74.7
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 4.6e-18 95.1 143 42.7
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 5.0e-17 91.7 141 48.9
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 2.5e-16 89.4 119 53.8
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 4.3e-16 88.6 116 49.1
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 2.3e-14 82.8 89 64.0
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 3.1e-14 82.4 88 64.8
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 4.0e-14 82.0 67 71.6
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 1.2e-13 80.5 89 62.9
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 2.9e-12 75.9 86 57.0
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 2.9e-12 75.9 91 54.9
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 2.4e-11 72.8 89 51.7
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 5.4e-11 71.6 142 34.5
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 9.2e-11 70.9 144 38.2
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 7.8e-10 67.8 137 35.0
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 7.8e-10 67.8 137 35.8
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 2.3e-09 66.2 133 36.1
QL06p021608 Quercus lobata HOM05D006603 ORTHO05D007786 1.5e-08 63.5 43 74.4
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 4.3e-08 62.0 137 33.6
Manes.18G032500 Manihot esculenta HOM05D002103 ORTHO05D004020 4.3e-08 62.0 133 30.8
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 7.3e-08 61.2 127 32.3
Gohir.A06G017200 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.2e-07 60.5 127 31.5
CAN.G52.6 Capsicum annuum HOM05D002103 ORTHO05D004020 1.6e-07 60.1 138 30.4
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 1.6e-07 60.1 138 34.1
Peaxi162Scf00929g00314 Petunia axillaris HOM05D002103 ORTHO05D004020 2.1e-07 59.7 131 33.6
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 4.7e-07 58.5 60 60.0
Peaxi162Scf00528g00417 Petunia axillaris HOM05D002103 ORTHO05D004020 4.7e-07 58.5 135 34.8
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 4.7e-07 58.5 136 33.1
CANSAT01G2416 Cannabis sativa HOM05D002103 ORTHO05D004020 6.2e-07 58.2 136 31.6
Glyma.17G243300 Glycine max HOM05D002103 ORTHO05D004020 6.2e-07 58.2 138 31.9
Sed0003893 Sechium edule HOM05D002103 ORTHO05D004020 6.2e-07 58.2 131 32.8
MD15G1084700 Malus domestica HOM05D002103 ORTHO05D004020 8.1e-07 57.8 136 31.6
SGA_v2.0_scaffold14G07034 Striga asiatica HOM05D002103 ORTHO05D004020 8.1e-07 57.8 132 29.5
Actinidia23265 Actinidia chinensis HOM05D002103 ORTHO05D004020 1.1e-06 57.4 135 32.6
Duzib093G0320 Durio zibethinus HOM05D002103 ORTHO05D004020 1.4e-06 57.0 135 31.1
Sed0011304 Sechium edule HOM05D002103 ORTHO05D004020 1.4e-06 57.0 131 33.6
GSVIVG01009523001 Vitis vinifera HOM05D002103 ORTHO05D004020 1.4e-06 57.0 130 32.3
Manes.05G171920 Manihot esculenta HOM05D002103 ORTHO05D004020 1.8e-06 56.6 132 29.5
Manes.05G171940 Manihot esculenta HOM05D002103 ORTHO05D004020 1.8e-06 56.6 132 29.5
Manes.05G172000 Manihot esculenta HOM05D002103 ORTHO05D004020 1.8e-06 56.6 132 29.5
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 3.1e-06 55.8 60 61.7
CSS0022390 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 3.1e-06 55.8 137 32.8
Pp3c12_23290 Physcomitrium patens HOM05D002103 ORTHO05D004020 3.1e-06 55.8 142 32.4
TAR381G0883 Trochodendron aralioides HOM05D002103 ORTHO05D004020 3.1e-06 55.8 134 31.3
Potri.014G031900 Populus trichocarpa HOM05D002103 ORTHO05D004020 4.0e-06 55.5 133 31.6
Prupe.1G438400 Prunus persica HOM05D002103 ORTHO05D004020 4.0e-06 55.5 135 30.4
Cc10_g04320 Coffea canephora HOM05D002103 ORTHO05D004020 5.2e-06 55.1 133 33.1
MD08G1103400 Malus domestica HOM05D002103 ORTHO05D004020 5.2e-06 55.1 136 31.6
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 6.8e-06 54.7 138 32.6
VMungo1309G0516 Vigna mungo HOM05D002103 ORTHO05D004020 6.8e-06 54.7 133 30.8
Phvul.009G063800 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 8.9e-06 54.3 140 31.4


User provided reference genes

Program Settings