Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01027820001 Vitis vinifera HOM05D002663 ORTHO05D002988 3.1e-78 295.0 147 100.0
GSVIVG01027822001 Vitis vinifera HOM05D002663 ORTHO05D002988 1.8e-46 189.5 113 88.5
Dinv29857 Davidia involucrata HOM05D002663 ORTHO05D002988 8.5e-28 127.5 105 67.6
FAN17G1274 Fragaria x ananassa HOM05D002663 ORTHO05D002988 3.7e-23 112.1 108 60.2
FAN22G0078 Fragaria x ananassa HOM05D002663 ORTHO05D002988 8.3e-23 110.9 108 59.3
CAN.G374.14 Capsicum annuum HOM05D002663 ORTHO05D002988 5.4e-22 108.2 107 58.9
Solyc06g053600.4 Solanum lycopersicum HOM05D002663 ORTHO05D002988 9.1e-22 107.5 104 59.6
Prupe.1G040000 Prunus persica HOM05D002663 ORTHO05D002988 2.0e-21 106.3 110 57.3
RcHm_v2.0_Chr4g0393291 Rosa chinensis HOM05D002663 ORTHO05D002988 2.0e-21 106.3 104 58.7
Sopen06g018690 Solanum pennellii HOM05D002663 ORTHO05D002988 2.0e-21 106.3 104 58.7
Gorai.002G025400 Gossypium raimondii HOM05D002663 ORTHO05D002988 2.7e-21 105.9 108 55.6
Prupe.1G039700 Prunus persica HOM05D002663 ORTHO05D002988 3.5e-21 105.5 110 56.4
Peaxi162Scf00579g00048 Petunia axillaris HOM05D002663 ORTHO05D002988 4.5e-21 105.1 110 56.4
FAN12G2471 Fragaria x ananassa HOM05D002663 ORTHO05D002988 5.9e-21 104.8 97 60.8
Nitab4.5_0000302g0190 Nicotiana tabacum HOM05D002663 ORTHO05D002988 5.9e-21 104.8 102 56.9
QL06p018104 Quercus lobata HOM05D002663 ORTHO05D002988 7.7e-21 104.4 106 61.3
PGSC0003DMG400016293 Solanum tuberosum HOM05D002663 ORTHO05D002988 7.7e-21 104.4 105 60.0
Carub.0001s0360 Capsella rubella HOM05D002663 ORTHO05D002988 1.3e-20 103.6 91 62.6
RcHm_v2.0_Chr4g0393301 Rosa chinensis HOM05D002663 ORTHO05D002988 1.7e-20 103.2 104 56.7
TAR362G0984 Trochodendron aralioides HOM05D002663 ORTHO05D002988 1.7e-20 103.2 102 59.8
vmacro15444 Vaccinium macrocarpon HOM05D002663 ORTHO05D002988 1.7e-20 103.2 106 55.7
Aqoxy2G03650 Aquilegia oxysepala HOM05D002663 ORTHO05D002988 2.3e-20 102.8 103 57.3
Gohir.D01G023000 Gossypium hirsutum HOM05D002663 ORTHO05D002988 2.3e-20 102.8 108 53.7
THA.LOC104801083 Tarenaya hassleriana HOM05D002663 ORTHO05D002988 2.3e-20 102.8 98 60.2
FvH4_4g03680 Fragaria vesca HOM05D002663 ORTHO05D002988 2.9e-20 102.4 97 59.8
Hma1.2p1_0992F.1_g245210 Hydrangea macrophylla HOM05D002663 ORTHO05D002988 2.9e-20 102.4 108 57.4
Nitab4.5_0005627g0010 Nicotiana tabacum HOM05D002663 ORTHO05D002988 2.9e-20 102.4 102 57.8
Sc13g0005480 Simmondsia chinensis HOM05D002663 ORTHO05D002988 3.8e-20 102.1 101 59.4
CSS0029715 Camellia sinensis var. sinensis HOM05D002663 ORTHO05D002988 5.0e-20 101.7 131 49.6
CANSAT78G1183 Cannabis sativa HOM05D002663 ORTHO05D002988 6.6e-20 101.3 109 57.8
Eucgr.H03041 Eucalyptus grandis HOM05D002663 ORTHO05D002988 6.6e-20 101.3 80 67.5
C05p02610 Brassica napus HOM05D002663 ORTHO05D002988 8.6e-20 100.9 106 54.7
Cc03_g05580 Coffea canephora HOM05D002663 ORTHO05D002988 8.6e-20 100.9 110 56.4
COL.COLO4_15882 Corchorus olitorius HOM05D002663 ORTHO05D002988 8.6e-20 100.9 108 56.5
BcaC07g36908 Brassica carinata HOM05D002663 ORTHO05D002988 1.1e-19 100.5 106 54.7
Gohir.D01G023100 Gossypium hirsutum HOM05D002663 ORTHO05D002988 1.1e-19 100.5 106 55.7
Gorai.002G025500 Gossypium raimondii HOM05D002663 ORTHO05D002988 1.1e-19 100.5 106 55.7
Atru.chr4.2054 Acer truncatum HOM05D002663 ORTHO05D002988 1.9e-19 99.8 64 78.1
Haze_11387 Corylus avellana HOM05D002663 ORTHO05D002988 1.9e-19 99.8 102 59.8
Haze_11388 Corylus avellana HOM05D002663 ORTHO05D002988 2.5e-19 99.4 102 59.8
PGR004G1088 Punica granatum HOM05D002663 ORTHO05D002988 2.5e-19 99.4 65 75.4
BolC5t29042H Brassica oleracea HOM05D002663 ORTHO05D002988 3.3e-19 99.0 101 57.4
Cfa022963 Carpinus fangiana HOM05D002663 ORTHO05D002988 3.3e-19 99.0 102 58.8
MSTRG.21915 Avicennia marina HOM05D002663 ORTHO05D002988 4.2e-19 98.6 104 56.7
Actinidia39905 Actinidia chinensis HOM05D002663 ORTHO05D002988 5.5e-19 98.2 106 56.6
Nn1g02781 Nelumbo nucifera HOM05D002663 ORTHO05D002988 5.5e-19 98.2 101 58.4
AT1G04420 Arabidopsis thaliana HOM05D002663 ORTHO05D002988 7.2e-19 97.8 103 54.4
arahy.Tifrunner.gnm1.ann1.3DH906 Arachis hypogaea HOM05D002663 ORTHO05D002988 7.2e-19 97.8 56 87.5
arahy.Tifrunner.gnm1.ann1.93JRWW Arachis hypogaea HOM05D002663 ORTHO05D002988 7.2e-19 97.8 56 87.5
MD16G1219600 Malus domestica HOM05D002663 ORTHO05D002988 9.5e-19 97.4 111 57.7
Cpa.g.sc44.50 Carica papaya HOM05D002663 ORTHO05D002988 1.2e-18 97.1 116 53.4
CiPaw.01G184000 Carya illinoinensis HOM05D002663 ORTHO05D002988 1.2e-18 97.1 64 78.1
AUR62002140 Chenopodium quinoa HOM05D002663 ORTHO05D002988 1.2e-18 97.1 90 63.3
AUR62015568 Chenopodium quinoa HOM05D002663 ORTHO05D002988 1.2e-18 97.1 90 63.3
Lj3A693T80 Lonicera japonica HOM05D002663 ORTHO05D002988 1.2e-18 97.1 73 69.9
Lj3A693T83 Lonicera japonica HOM05D002663 ORTHO05D002988 1.2e-18 97.1 73 69.9
CARHR003760 Cardamine hirsuta HOM05D002663 ORTHO05D002988 1.6e-18 96.7 103 55.3
Gohir.A01G024900 Gossypium hirsutum HOM05D002663 ORTHO05D002988 1.6e-18 96.7 107 52.3
Psat6g104760 Pisum sativum HOM05D002663 ORTHO05D002988 1.6e-18 96.7 92 60.9
Sabra08G0127600 Salix brachista HOM05D000189 ORTHO05D000474 1.6e-18 96.7 101 53.5
Thhalv10007737m.g Eutrema salsugineum HOM05D002663 ORTHO05D002988 2.1e-18 96.3 91 58.2
Thecc.04G256100 Theobroma cacao HOM05D002663 ORTHO05D002988 2.1e-18 96.3 102 54.9
TWI09G0632 Tripterygium wilfordii HOM05D002663 ORTHO05D002988 2.1e-18 96.3 97 57.7
Ciclev10005068m.g Citrus clementina HOM05D002663 ORTHO05D002988 2.8e-18 95.9 64 75.0
Lj6g0014805 Lotus japonicus HOM05D002663 ORTHO05D002988 2.8e-18 95.9 93 61.3
Lalb_Chr19g0128191 Lupinus albus HOM05D002663 ORTHO05D002988 2.8e-18 95.9 56 82.1
Aa31LG1G20460 Aethionema arabicum HOM05D002663 ORTHO05D002988 3.6e-18 95.5 97 56.7
A10p02860 Brassica napus HOM05D002663 ORTHO05D002988 3.6e-18 95.5 101 54.5
Ca_12013_v3 Cicer arietinum L. HOM05D002663 ORTHO05D002988 3.6e-18 95.5 52 90.4
ATR0736G162 Amborella trichopoda HOM05D002663 ORTHO05D002988 4.7e-18 95.1 101 59.4
DCAR_024256 Daucus carota HOM05D002663 ORTHO05D002988 6.1e-18 94.7 65 72.3
BraA10t42553Z Brassica rapa HOM05D002663 ORTHO05D002988 8.0e-18 94.4 91 57.1
Glyma.02G005200 Glycine max HOM05D002663 ORTHO05D002988 8.0e-18 94.4 116 50.0
PSO017G0007 Papaver somniferum HOM05D002663 ORTHO05D002988 1.0e-17 94.0 100 58.0
PSO063G6804 Papaver somniferum HOM05D002663 ORTHO05D002988 1.8e-17 93.2 67 74.6
Potri.008G167400 Populus trichocarpa HOM05D002663 ORTHO05D002988 1.8e-17 93.2 101 54.5
Medtr1g042730 Medicago truncatula HOM05D002663 ORTHO05D002988 2.3e-17 92.8 52 86.5
SalBow3G3891 Salvia bowleyana HOM05D002663 ORTHO05D002988 2.3e-17 92.8 103 56.3
Ah.04g155740 Amaranthus hybridus HOM05D002663 ORTHO05D002988 4.0e-17 92.0 112 51.8
AUR62002141 Chenopodium quinoa HOM05D002663 ORTHO05D002988 4.0e-17 92.0 102 57.8
RcHm_v2.0_Chr4g0393231 Rosa chinensis HOM05D002663 ORTHO05D002988 4.0e-17 92.0 78 64.1
Phvul.007G274000 Phaseolus vulgaris HOM05D002663 ORTHO05D002988 5.2e-17 91.7 87 58.6
Hund03041 Selenicereus undatus HOM05D002663 ORTHO05D002988 5.2e-17 91.7 62 75.8
TPR.G25174 Trifolium pratense HOM05D002663 ORTHO05D002988 5.2e-17 91.7 52 84.6
ClCG04G012670 Citrullus lanatus HOM05D002663 ORTHO05D002988 6.8e-17 91.3 57 75.4
Sp1g03240 Schrenkiella parvula HOM05D002663 ORTHO05D002988 6.8e-17 91.3 52 82.7
unitig_26.g9552 Utricularia gibba HOM05D002663 ORTHO05D002988 6.8e-17 91.3 75 69.3
Migut.N00273 Erythranthe guttata HOM05D002663 ORTHO05D002988 1.2e-16 90.5 60 76.7
Oeu011504.1 Olea europaea HOM05D002663 ORTHO05D002988 1.2e-16 90.5 108 53.7
VMungo0720G1673 Vigna mungo HOM05D002663 ORTHO05D002988 1.2e-16 90.5 93 54.8
EL10Ac3g05002 Beta vulgaris HOM05D002663 ORTHO05D002988 1.5e-16 90.1 88 58.0
TPR.G9376 Trifolium pratense HOM05D002663 ORTHO05D002988 1.5e-16 90.1 86 60.5
MELO3C001939.2 Cucumis melo HOM05D002663 ORTHO05D002988 4.4e-16 88.6 91 56.0
BcaB08g35998 Brassica carinata HOM05D002663 ORTHO05D002988 5.7e-16 88.2 55 74.5
CsaV3_1G005010 Cucumis sativus L. HOM05D002663 ORTHO05D002988 9.8e-16 87.4 67 67.2
MBI07_g16927_MAGBIO Magnolia biondii HOM05D002663 ORTHO05D002988 1.7e-15 86.7 115 50.4
HanXRQChr03g0091441 Helianthus annuus HOM05D002663 ORTHO05D002988 2.2e-15 86.3 95 51.6
Os03g0611200 Oryza sativa ssp. japonica HOM05D002663 ORTHO05D002988 2.8e-15 85.9 68 61.8
Rhsim02G0037500 Rhododendron simsii HOM05D002663 ORTHO05D002988 2.8e-15 85.9 75 68.0
Sed0019138 Sechium edule HOM05D002663 ORTHO05D002988 3.7e-15 85.5 90 53.3
SEGI_32749 Sequoiadendron giganteum HOM05D002663 ORTHO05D002988 6.3e-15 84.7 65 64.6
Lsat_1_v5_gn_3_120601 Lactuca sativa HOM05D002663 ORTHO05D002988 1.8e-14 83.2 65 63.1
HPP92_008955 Vanilla planifolia HOM05D002663 ORTHO05D002988 1.8e-14 83.2 52 73.1
Zm00001eb051500 Zea mays HOM05D002663 ORTHO05D002988 1.2e-13 80.5 88 48.9
Zm00001eb113180 Zea mays HOM05D002663 ORTHO05D002988 1.2e-13 80.5 88 48.9
ECA240G1813 Erigeron canadensis HOM05D001289 ORTHO05D002298 1.6e-13 80.1 62 62.9
Mapoly0053s0107 Marchantia polymorpha HOM05D002663 ORTHO05D002988 5.9e-13 78.2 104 48.1
Pp3c12_10890 Physcomitrium patens HOM05D002663 ORTHO05D002988 2.9e-12 75.9 62 62.9
SGA_v2.0_scaffold31G12664 Striga asiatica HOM05D002663 ORTHO05D002988 3.8e-12 75.5 110 46.4
Zm00001eb007040 Zea mays HOM05D002663 ORTHO05D002988 9.5e-11 70.9 80 47.5
SMO134G0117 Selaginella moellendorffii HOM05D002663 ORTHO05D002988 1.2e-10 70.5 51 66.7
Zm00001eb150350 Zea mays HOM05D002663 ORTHO05D002988 6.1e-10 68.2 91 39.6
MD13G1214400 Malus domestica HOM05D002663 ORTHO05D002988 8.0e-10 67.8 100 47.0
SMO274G0009 Selaginella moellendorffii HOM05D002663 ORTHO05D002988 1.0e-09 67.4 54 59.3
AUR62015567 Chenopodium quinoa HOM05D002663 ORTHO05D002988 3.1e-09 65.9 90 50.0
Cre10.g461900 Chlamydomonas reinhardtii HOM05D002663 ORTHO05D002988 8.9e-09 64.3 65 56.9
ECA240G4022 Erigeron canadensis HOM05D002663 ORTHO05D002988 2.0e-08 63.2 78 44.9
Haze_11383 Corylus avellana HOM05D002663 ORTHO05D002988 2.6e-08 62.8 43 72.1
Cre17.g699900 Chlamydomonas reinhardtii HOM05D002663 ORTHO05D002988 3.4e-08 62.4 52 57.7
Manes.03G163800 Manihot esculenta HOM05D002663 ORTHO05D002988 5.4e-06 55.1 31 80.6


User provided reference genes

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