Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 2.0e-277 958.7 586 100.0
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 6.6e-63 246.1 345 48.4
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.1e-28 132.5 223 46.6
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.1e-28 132.5 223 46.6
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 4.4e-27 127.1 208 46.2
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 5.8e-27 126.7 208 46.2
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 7.6e-27 126.3 213 44.1
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 1.3e-26 125.6 221 40.7
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 1.1e-25 122.5 224 45.5
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 5.4e-25 120.2 234 43.2
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 1.7e-23 115.2 227 40.1
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 1.5e-22 112.1 203 41.4
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 2.5e-22 111.3 217 41.0
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 2.5e-22 111.3 222 38.7
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 3.3e-22 110.9 224 42.0
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 3.3e-22 110.9 213 39.9
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 5.6e-22 110.2 217 39.2
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.6e-22 110.2 245 38.4
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 7.3e-22 109.8 202 41.6
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 1.3e-21 109.0 197 41.1
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 4.8e-21 107.1 193 39.9
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.2e-21 106.7 247 39.7
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 1.1e-20 105.9 199 37.7
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 1.1e-20 105.9 239 39.3
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.1e-20 105.9 239 39.3
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 1.1e-20 105.9 241 38.6
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 3.1e-20 104.4 445 36.0
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 3.1e-20 104.4 186 40.3
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.0e-20 104.0 239 39.3
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 1.2e-19 102.4 231 37.7
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 3.4e-19 100.9 213 39.9
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 3.4e-19 100.9 229 38.9
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 4.5e-19 100.5 208 36.1
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 4.5e-19 100.5 231 39.0
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 4.5e-19 100.5 241 37.3
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 4.5e-19 100.5 220 37.3
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 4.5e-19 100.5 183 41.0
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 5.8e-19 100.1 239 37.2
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 9.9e-19 99.4 217 37.3
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.3e-18 99.0 233 38.6
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 2.2e-18 98.2 207 38.6
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 2.9e-18 97.8 231 36.4
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 2.9e-18 97.8 206 40.3
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 4.9e-18 97.1 213 37.1
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.9e-18 97.1 251 36.7
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 4.9e-18 97.1 187 42.8
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 4.9e-18 97.1 193 40.4
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.4e-18 96.7 246 37.8
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 8.4e-18 96.3 227 35.7
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 1.4e-17 95.5 116 48.3
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 1.9e-17 95.1 191 36.6
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 1.9e-17 95.1 237 37.6
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 3.2e-17 94.4 203 38.4
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 3.2e-17 94.4 211 40.3
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.1e-17 93.2 247 38.5
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 7.1e-17 93.2 227 35.7
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 9.3e-17 92.8 202 38.6
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 9.3e-17 92.8 236 36.9
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 1.2e-16 92.4 176 37.5
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 1.2e-16 92.4 189 37.6
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 1.2e-16 92.4 228 37.3
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 2.1e-16 91.7 203 37.9
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 2.1e-16 91.7 197 37.1
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 2.1e-16 91.7 208 38.0
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 2.7e-16 91.3 114 52.6
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 3.5e-16 90.9 244 36.1
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 4.6e-16 90.5 195 40.0
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 6.0e-16 90.1 239 36.4
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 1.8e-15 88.6 236 35.2
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-15 88.6 251 35.9
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 3.9e-15 87.4 238 33.6
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 3.9e-15 87.4 196 36.7
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 3.9e-15 87.4 227 35.2
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.1e-15 87.0 236 35.2
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 8.7e-15 86.3 240 36.2
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 1.9e-14 85.1 220 35.0
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.5e-14 84.7 215 32.6
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 2.5e-14 84.7 248 33.1
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 5.6e-14 83.6 212 33.0
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 7.4e-14 83.2 216 37.5
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 9.6e-14 82.8 203 32.5
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 9.6e-14 82.8 184 34.2
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.3e-13 82.4 212 38.7
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 2.1e-13 81.6 113 43.4
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.8e-12 78.6 214 36.9
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 2.4e-12 78.2 223 31.4
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 9.0e-12 76.3 213 32.9
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 4.5e-11 73.9 118 38.1
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 4.5e-11 73.9 258 32.6
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 5.8e-11 73.6 225 33.3
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.9e-10 71.2 234 33.8
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 3.8e-10 70.9 219 30.1
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 3.8e-10 70.9 203 34.0
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 4.9e-10 70.5 118 39.8
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 1.9e-09 68.6 218 32.6
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.4e-09 68.2 233 33.5
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 5.5e-09 67.0 242 30.6
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 5.5e-09 67.0 189 32.8
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 1.2e-08 65.9 188 29.8
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.2e-08 65.9 115 35.7
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.2e-08 65.9 122 36.1
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 1.6e-08 65.5 210 30.5
HPP92_023037 Vanilla planifolia HOM05D004242 ORTHO05D004349 2.7e-08 64.7 116 34.5
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 3.5e-08 64.3 224 33.0
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.5e-08 64.3 160 33.1
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 3.5e-08 64.3 127 33.9
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 4.6e-08 63.9 221 31.2
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 7.9e-08 63.2 235 29.4
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 7.9e-08 63.2 181 28.2
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 7.9e-08 63.2 218 31.2
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.3e-07 62.4 160 29.4
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 1.3e-07 62.4 224 32.6
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 2.3e-07 61.6 125 38.4
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 5.1e-07 60.5 126 32.5
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 5.1e-07 60.5 114 34.2
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 6.7e-07 60.1 228 31.1
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 8.7e-07 59.7 111 37.8
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 8.7e-07 59.7 221 32.6
MELO3C005998.2 Cucumis melo HOM05D030996 ORTHO05D004349 8.7e-07 59.7 174 29.3
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 8.7e-07 59.7 201 35.3
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 8.7e-07 59.7 111 33.3
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 1.1e-06 59.3 167 32.3
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.1e-06 59.3 241 29.0
Lj9C256T7 Lonicera japonica HOM05D012621 ORTHO05D004349 1.1e-06 59.3 122 33.6
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 1.9e-06 58.5 223 32.7
Lj9C255T10 Lonicera japonica HOM05D012621 ORTHO05D004349 1.9e-06 58.5 132 33.3
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 2.5e-06 58.2 215 30.2
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 2.5e-06 58.2 114 31.6
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 2.5e-06 58.2 112 32.1
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 4.3e-06 57.4 130 33.1
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 4.3e-06 57.4 117 33.3
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 4.3e-06 57.4 229 28.8
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 4.3e-06 57.4 120 33.3
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 5.6e-06 57.0 211 29.9
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 5.6e-06 57.0 149 32.9
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 5.6e-06 57.0 184 30.4
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 5.6e-06 57.0 115 34.8
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 5.6e-06 57.0 111 39.6
CsaV3_3G007820 Cucumis sativus L. HOM05D030996 ORTHO05D004349 7.4e-06 56.6 221 27.6
Sed0027906 Sechium edule HOM05D030996 ORTHO05D004349 7.4e-06 56.6 235 27.2
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 9.6e-06 56.2 128 34.4
Glyma.16G021450 Glycine max HOM05D004242 ORTHO05D004349 9.6e-06 56.2 148 31.8
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 9.6e-06 56.2 114 31.6
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 9.6e-06 56.2 142 31.7


User provided reference genes

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