Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01027360001 Vitis vinifera HOM05D000540 ORTHO05D008105 1.0e-54 216.5 107 100.0
GSVIVG01038017001 Vitis vinifera HOM05D000540 ORTHO05D008105 3.3e-29 131.7 94 71.3
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 5.6e-29 131.0 66 90.9
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 5.6e-29 131.0 66 90.9
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 5.6e-29 131.0 66 90.9
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 9.6e-29 130.2 99 66.7
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 2.8e-28 128.6 94 68.1
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 2.8e-28 128.6 94 68.1
Nitab4.5_0011987g0020 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.1e-27 126.7 102 65.7
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 1.8e-27 125.9 64 90.6
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 2.4e-27 125.6 66 87.9
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 3.1e-27 125.2 98 66.3
SGA_v2.0_scaffold507G52537 Striga asiatica HOM05D000540 ORTHO05D000681 5.4e-24 114.4 65 78.5
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.0e-22 110.2 95 57.9
Nitab4.5_0009703g0070 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.9e-21 105.9 86 62.8
Nitab4.5_0000334g0010 Nicotiana tabacum HOM05D000540 ORTHO05D008105 4.8e-20 101.3 78 62.8
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 1.4e-19 99.8 64 68.8
ClCG00G000520 Citrullus lanatus HOM05D000540 ORTHO05D008105 4.0e-19 98.2 65 73.8
SHI40568 Sapria himalayana HOM05D000540 ORTHO05D000681 4.0e-19 98.2 97 56.7
ClCG00G000530 Citrullus lanatus HOM05D000540 ORTHO05D008105 5.3e-19 97.8 65 72.3
SHI36701 Sapria himalayana HOM05D000540 ORTHO05D008105 5.3e-19 97.8 64 71.9
SHI38983 Sapria himalayana HOM05D000540 ORTHO05D008105 6.9e-19 97.4 62 72.6
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 9.0e-19 97.1 90 50.0
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 9.0e-19 97.1 78 64.1
SHI37554 Sapria himalayana HOM05D000540 ORTHO05D008105 9.0e-19 97.1 62 71.0
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 1.2e-18 96.7 66 62.1
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.2e-18 96.7 97 53.6
SHI50600 Sapria himalayana HOM05D000540 ORTHO05D000681 1.2e-18 96.7 63 73.0
SHI31828 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI34991 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI35858 Sapria himalayana HOM05D000540 ORTHO05D008105 1.5e-18 96.3 63 71.4
SHI37858 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI37906 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI37965 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI38052 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI38194 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI38471 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI38513 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI38589 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI38605 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI38868 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI41069 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI43265 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI43312 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI45733 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI50522 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
SHI53542 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-18 96.3 63 71.4
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 1.5e-18 96.3 66 65.2
Atru.chr7.1082 Acer truncatum HOM05D000540 ORTHO05D008105 2.0e-18 95.9 88 51.1
SHI54850 Sapria himalayana HOM05D000540 ORTHO05D008105 2.0e-18 95.9 62 71.0
SHI51026 Sapria himalayana HOM05D000540 ORTHO05D000681 2.6e-18 95.5 63 69.8
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 3.4e-18 95.1 66 63.6
SHI51272 Sapria himalayana HOM05D000540 ORTHO05D000681 3.4e-18 95.1 63 69.8
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 4.5e-18 94.7 88 50.0
SHI49875 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-18 94.7 63 68.3
SHI53038 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-18 94.7 63 68.3
SHI27340 Sapria himalayana HOM05D000540 ORTHO05D000681 7.6e-18 94.0 63 71.4
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 1.3e-17 93.2 82 54.9
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 2.2e-17 92.4 66 59.1
SHI37326 Sapria himalayana HOM05D000540 ORTHO05D000681 2.2e-17 92.4 63 68.3
SHI38050 Sapria himalayana HOM05D000540 ORTHO05D000681 2.2e-17 92.4 95 55.8
SHI38387 Sapria himalayana HOM05D000540 ORTHO05D000681 2.2e-17 92.4 53 81.1
SHI40340 Sapria himalayana HOM05D000540 ORTHO05D000681 2.9e-17 92.0 63 68.3
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 3.8e-17 91.7 88 51.1
SHI54942 Sapria himalayana HOM05D000540 ORTHO05D008105 3.8e-17 91.7 63 68.3
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 4.9e-17 91.3 85 52.9
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 4.9e-17 91.3 85 52.9
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 4.9e-17 91.3 85 52.9
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 4.9e-17 91.3 85 52.9
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 4.9e-17 91.3 85 52.9
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 4.9e-17 91.3 85 52.9
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 4.9e-17 91.3 85 52.9
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 4.9e-17 91.3 88 50.0
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 4.9e-17 91.3 85 52.9
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 4.9e-17 91.3 85 52.9
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 6.4e-17 90.9 82 53.7
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 6.4e-17 90.9 88 50.0
SHI37876 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-17 90.9 63 69.8
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 6.4e-17 90.9 82 53.7
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 6.4e-17 90.9 66 65.2
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 1.4e-16 89.7 60 63.3
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 1.4e-16 89.7 63 63.5
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 1.4e-16 89.7 63 63.5
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 1.9e-16 89.4 66 60.6
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 1.9e-16 89.4 60 63.3
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.9e-16 89.4 60 63.3
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.9e-16 89.4 60 63.3
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.9e-16 89.4 60 63.3
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 2.4e-16 89.0 82 52.4
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 2.4e-16 89.0 82 52.4
Solyc12g035810.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 2.4e-16 89.0 66 66.7
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 3.2e-16 88.6 66 62.1
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 3.2e-16 88.6 66 62.1
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 3.2e-16 88.6 66 62.1
SHI37000 Sapria himalayana HOM05D000540 ORTHO05D000681 4.2e-16 88.2 63 63.5
Lj3g0015602 Lotus japonicus HOM05D000540 ORTHO05D008105 7.1e-16 87.4 89 47.2
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 7.1e-16 87.4 63 60.3
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 7.1e-16 87.4 63 60.3
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 9.3e-16 87.0 102 47.1
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 9.3e-16 87.0 63 60.3
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 1.2e-15 86.7 63 61.9
Solyc05g045820.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 1.2e-15 86.7 55 76.4
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 2.1e-15 85.9 64 59.4
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 2.1e-15 85.9 64 64.1
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 2.7e-15 85.5 83 49.4
Sp7g05780 Schrenkiella parvula HOM05D000540 ORTHO05D008105 2.7e-15 85.5 85 50.6
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 4.6e-15 84.7 59 66.1
SHI44879 Sapria himalayana HOM05D000540 ORTHO05D008105 6.0e-15 84.3 51 76.5
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 7.9e-15 84.0 66 59.1
Glyma.08G106800 Glycine max HOM05D000540 ORTHO05D008105 7.9e-15 84.0 89 46.1
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 7.9e-15 84.0 62 61.3
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 7.9e-15 84.0 60 63.3
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 7.9e-15 84.0 60 63.3
Phvul.001G167500 Phaseolus vulgaris HOM05D000540 ORTHO05D008105 7.9e-15 84.0 59 64.4
arahy.Tifrunner.gnm1.ann1.WZXK6X Arachis hypogaea HOM05D000540 ORTHO05D008105 1.0e-14 83.6 66 56.1
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 1.0e-14 83.6 59 64.4
arahy.Tifrunner.gnm1.ann1.3CPC1Y Arachis hypogaea HOM05D000540 ORTHO05D008105 1.3e-14 83.2 66 56.1
Medtr5g085270 Medicago truncatula HOM05D000540 ORTHO05D008105 1.8e-14 82.8 59 64.4
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 2.3e-14 82.4 90 47.8
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 2.3e-14 82.4 90 47.8
VMungo1383G2423 Vigna mungo HOM05D001610 ORTHO05D001585 2.3e-14 82.4 89 46.1
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 3.0e-14 82.0 82 48.8
Glyma.05G150000 Glycine max HOM05D000540 ORTHO05D008105 3.9e-14 81.6 89 44.9
TPR.G34443 Trifolium pratense HOM05D000540 ORTHO05D008105 3.9e-14 81.6 90 47.8
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 6.7e-14 80.9 56 66.1
ClCG03G011250 Citrullus lanatus HOM05D000540 ORTHO05D000001 1.1e-13 80.1 46 84.8
SHI48062 Sapria himalayana HOM05D000540 ORTHO05D000681 1.9e-13 79.3 44 81.8
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 1.3e-12 76.6 56 64.3
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 1.3e-12 76.6 56 64.3
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 1.3e-12 76.6 56 64.3
SHI35194 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-12 75.9 53 69.8
SHI41065 Sapria himalayana HOM05D000540 ORTHO05D000681 8.2e-12 73.9 47 74.5
SHI34608 Sapria himalayana HOM05D000540 ORTHO05D000681 1.8e-11 72.8 42 83.3
CAN.G993.9 Capsicum annuum HOM05D003467 ORTHO05D008105 2.4e-11 72.4 38 89.5
Sabra13G0107600 Salix brachista HOM05D000540 ORTHO05D008105 5.3e-11 71.2 83 43.4
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 1.2e-10 70.1 83 42.2
SHI38319 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-10 69.7 38 81.6
SHI40214 Sapria himalayana HOM05D000540 ORTHO05D000681 3.4e-10 68.6 53 60.4
Peaxi162Scf00406g00134 Petunia axillaris HOM05D001223 ORTHO05D001058 2.2e-09 65.9 34 82.4
Zm00001eb293400 Zea mays HOM05D042568 ORTHO05D008105 2.2e-09 65.9 51 56.9
Solyc05g045760.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 2.9e-09 65.5 76 48.7
MBI05_g05349_MAGBIO Magnolia biondii HOM05D016544 ORTHO05D017245 6.5e-09 64.3 35 82.9
Nitab4.5_0000351g0280 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.9e-08 62.8 34 82.4
SHI37207 Sapria himalayana HOM05D000540 ORTHO05D008105 3.2e-08 62.0 45 64.4
SHI37890 Sapria himalayana HOM05D000540 ORTHO05D008105 3.2e-08 62.0 41 70.7
Medtr8g466190 Medicago truncatula HOM05D000540 ORTHO05D008105 4.2e-08 61.6 63 47.6
SHI36893 Sapria himalayana HOM05D000540 ORTHO05D008105 9.3e-08 60.5 44 63.6
SHI40550 Sapria himalayana HOM05D000540 ORTHO05D008105 1.2e-07 60.1 45 62.2
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 2.7e-07 58.9 63 47.6
SHI54100 Sapria himalayana HOM05D000540 ORTHO05D008105 4.6e-07 58.2 45 57.8
Potri.019G101950 Populus trichocarpa HOM05D000540 ORTHO05D008105 7.9e-07 57.4 57 49.1
SHI40537 Sapria himalayana HOM05D000540 ORTHO05D008105 7.9e-07 57.4 45 62.2
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 3.0e-06 55.5 80 38.8
BcaB03g14613 Brassica carinata HOM05D000142 ORTHO05D000124 5.1e-06 54.7 65 44.6
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 6.7e-06 54.3 80 37.5


User provided reference genes

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