Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 2129.4 1084 100.0
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1654.4 1086 76.2
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1653.3 1093 75.0
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1640.2 1073 76.8
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1637.9 1099 74.3
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1635.5 1111 74.4
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1629.4 1065 78.2
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1628.2 1082 76.6
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1624.4 1087 74.5
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1620.5 1082 75.9
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1610.1 1085 75.9
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1608.2 1085 73.5
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1600.1 1092 74.9
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1595.9 1080 75.2
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1593.2 1084 73.2
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1592.4 1080 73.8
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1582.8 1078 74.1
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1582.4 1088 72.7
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1565.4 1085 72.5
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1561.6 1083 74.7
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1557.3 1083 72.3
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1550.4 1099 72.4
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1550.0 1082 72.0
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1546.9 1082 73.0
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1544.3 1086 72.2
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1541.9 1083 71.7
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1540.0 1078 72.1
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1536.5 1080 72.1
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1535.4 1085 71.7
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1533.9 1081 71.7
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1533.9 1084 70.1
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1532.7 1080 72.0
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1523.8 1077 71.6
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1522.7 1082 71.4
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1521.1 1090 70.1
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1519.6 1082 71.3
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1519.2 1088 70.6
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1517.7 1082 71.3
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1516.1 1071 71.8
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1515.7 1106 69.6
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1514.6 1079 69.8
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1513.4 1081 71.9
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1512.3 1083 70.3
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1510.0 1083 71.1
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1510.0 1082 71.3
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1508.8 1081 70.5
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1508.0 1082 69.2
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1507.7 1079 71.1
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1506.9 1081 69.7
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1506.5 1082 71.3
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1506.1 1077 71.6
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1505.0 1078 71.5
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1503.0 1079 69.3
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1502.6 1081 70.8
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1500.3 1078 70.7
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1500.3 1081 69.1
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1500.3 1084 69.4
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1499.2 1080 69.3
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1498.0 1082 70.4
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1497.6 1081 70.0
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1496.5 1077 69.2
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1496.1 1084 69.2
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1488.8 1082 70.4
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1488.8 1084 70.2
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1483.8 1079 68.5
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1481.8 1084 69.0
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1479.2 1082 69.8
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1477.6 1077 70.4
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1474.5 1084 69.0
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1469.1 1083 68.4
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1468.8 1086 69.2
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1466.8 1084 68.3
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1466.1 1113 67.7
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1466.1 1069 71.0
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1455.3 1080 68.5
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1449.1 1216 63.1
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1447.6 1080 69.8
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1447.2 1083 66.5
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1441.8 1083 69.1
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1435.2 959 76.1
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1432.2 1079 67.7
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1427.9 1082 69.2
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1379.4 1082 65.7
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1373.2 1086 65.4
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1364.0 1137 63.3
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1360.5 1087 66.4
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1353.2 950 71.4
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1298.5 1082 61.5
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1294.6 950 69.8
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1290.0 1203 57.9
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1262.7 1080 59.7
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1174.8 967 65.7
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1173.7 1080 57.2
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1166.0 1088 60.1
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1142.1 767 74.2
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1115.5 762 72.4
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 7.6e-307 1057.4 763 69.9
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 1.1e-292 1010.4 728 71.0
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 1.6e-272 943.3 1093 47.0
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 3.7e-269 932.2 1024 54.5
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 5.5e-265 918.3 1092 47.6
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 8.8e-255 884.4 614 72.5
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.5e-230 803.9 721 59.8
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 1.9e-225 786.9 1025 45.3
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 4.0e-215 752.7 545 69.7
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 4.9e-197 692.6 506 67.6
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 8.1e-192 675.2 1514 32.8
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 2.0e-174 617.5 662 51.5
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 4.8e-152 543.1 408 68.4
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 5.0e-133 479.9 336 72.0
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 1.7e-88 332.0 203 79.3
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 7.2e-47 193.7 164 57.9
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 4.5e-41 174.5 124 75.0
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.9e-23 115.9 59 86.4
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 3.3e-20 105.1 54 87.0
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 5.3e-18 97.8 65 67.7
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.4e-10 72.4 49 65.3
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.4e-10 72.4 49 65.3
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 2.4e-10 72.4 248 28.2
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 3.8e-08 65.1 40 72.5
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 1.1e-07 63.5 73 46.6
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 2.5e-07 62.4 73 45.2
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 4.2e-07 61.6 231 28.1
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 5.5e-07 61.2 198 29.8
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 5.5e-07 61.2 229 27.9
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 9.4e-07 60.5 229 26.6
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 1.2e-06 60.1 229 27.5
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 1.6e-06 59.7 216 27.3
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.6e-06 59.7 216 27.3
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 2.1e-06 59.3 231 25.1
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 2.7e-06 58.9 212 26.9
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.7e-06 58.9 199 28.1
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 4.7e-06 58.2 166 27.7
GSVIVG01037616001 Vitis vinifera HOM05D006425 ORTHO05D007312 4.7e-06 58.2 31 80.6
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 6.1e-06 57.8 201 28.9
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 6.1e-06 57.8 227 26.0
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 6.1e-06 57.8 216 27.3
SMO361G0266 Selaginella moellendorffii HOM05D006425 ORTHO05D007312 6.1e-06 57.8 47 53.2
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 8.0e-06 57.4 212 27.8
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 8.0e-06 57.4 215 26.5
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 8.0e-06 57.4 215 27.0


User provided reference genes

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