Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 5.7e-147 524.2 266 100.0
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 3.5e-120 435.3 268 81.7
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.5e-118 429.9 267 80.9
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 4.7e-117 424.9 267 78.3
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 1.8e-116 422.9 267 79.4
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 2.0e-115 419.5 268 81.0
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 3.7e-114 415.2 262 77.9
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 4.8e-114 414.8 263 77.9
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 5.4e-113 411.4 266 78.6
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 1.2e-112 410.2 269 77.7
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 3.5e-112 408.7 266 75.2
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.0e-111 407.1 266 75.2
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 1.0e-111 407.1 263 76.8
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 2.2e-111 406.0 266 77.4
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 3.8e-111 405.2 268 76.5
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 2.1e-109 399.4 266 77.1
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.0e-108 397.1 263 75.3
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 1.0e-108 397.1 263 75.3
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.0e-108 397.1 264 76.9
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.4e-108 396.7 269 74.0
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 1.8e-108 396.4 262 76.7
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 3.0e-108 395.6 265 75.5
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 2.6e-107 392.5 272 73.9
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 5.7e-107 391.3 271 74.5
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 7.5e-107 391.0 266 76.3
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 1.3e-106 390.2 270 74.1
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 2.2e-106 389.4 272 72.8
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 8.3e-106 387.5 267 74.9
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 8.3e-106 387.5 271 72.3
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 3.1e-105 385.6 264 73.9
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 5.4e-105 384.8 265 72.8
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 9.2e-105 384.0 269 74.3
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 1.6e-104 383.3 268 71.6
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 1.6e-104 383.3 269 74.0
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.0e-104 382.9 262 74.0
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.0e-104 382.9 262 74.0
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 2.7e-104 382.5 260 71.9
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 3.5e-104 382.1 269 71.7
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 4.5e-104 381.7 265 71.3
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 4.5e-104 381.7 269 72.9
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 7.8e-104 380.9 266 72.2
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.0e-103 380.6 269 72.5
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 1.0e-103 380.6 262 73.3
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 1.3e-103 380.2 268 71.3
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 1.3e-103 380.2 262 73.3
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.7e-103 379.8 262 73.3
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 2.3e-103 379.4 269 74.0
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.0e-103 378.3 262 72.9
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.0e-103 378.3 262 72.9
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 6.6e-103 377.9 268 72.0
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 1.1e-102 377.1 266 72.9
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 1.5e-102 376.7 270 71.5
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 2.5e-102 375.9 269 71.4
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 5.6e-102 374.8 268 70.5
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 5.6e-102 374.8 266 73.3
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 7.3e-102 374.4 269 70.6
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 7.3e-102 374.4 267 70.0
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 2.8e-101 372.5 269 74.0
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 3.6e-101 372.1 264 70.8
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 3.6e-101 372.1 269 70.3
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 3.6e-101 372.1 269 70.6
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 1.0e-100 370.5 265 70.2
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 5.2e-100 368.2 269 70.6
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 6.8e-100 367.9 269 71.7
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 1.2e-99 367.1 269 70.3
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 1.2e-99 367.1 269 70.3
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 2.0e-99 366.3 269 70.3
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 2.6e-99 365.9 268 69.0
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 3.4e-99 365.5 268 69.8
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 3.4e-99 365.5 269 68.8
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 3.4e-99 365.5 265 71.7
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 5.7e-99 364.8 264 69.3
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 9.8e-99 364.0 268 69.8
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 9.8e-99 364.0 264 69.3
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 9.8e-99 364.0 269 70.6
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.3e-98 363.6 268 69.8
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 4.9e-98 361.7 270 71.1
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 3.2e-97 359.0 270 68.1
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 4.1e-97 358.6 262 69.5
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.2e-96 357.1 242 74.8
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 5.9e-96 354.8 267 70.0
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 5.9e-96 354.8 267 69.7
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 8.6e-95 350.9 275 66.9
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.1e-94 350.5 248 71.4
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 3.3e-94 349.0 250 70.8
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 3.3e-94 349.0 264 69.7
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 3.3e-94 349.0 263 67.7
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 7.3e-94 347.8 267 68.9
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 1.1e-92 344.0 253 70.4
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 3.1e-92 342.4 253 70.0
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 4.0e-92 342.0 266 69.2
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 4.0e-92 342.0 267 67.8
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 4.4e-91 338.6 266 66.5
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 2.9e-90 335.9 253 69.6
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 2.9e-90 335.9 253 69.6
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 5.4e-89 331.6 313 60.4
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 4.7e-85 318.5 266 65.0
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 6.2e-85 318.2 212 72.2
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 6.2e-85 318.2 218 71.6
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 5.8e-83 311.6 265 64.9
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 3.2e-81 305.8 237 66.2
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 1.1e-78 297.4 183 78.7
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 4.7e-77 292.0 217 64.1
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 1.4e-76 290.4 237 65.8
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 1.4e-76 290.4 220 64.1
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.2e-76 288.5 195 72.8
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 5.8e-75 285.0 262 61.5
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 9.2e-73 277.7 200 71.5
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 9.2e-73 277.7 200 71.5
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 2.6e-67 259.6 209 60.8
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 2.4e-65 253.1 205 58.0
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 4.2e-65 252.3 251 53.0
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 3.0e-63 246.1 216 54.2
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 9.6e-62 241.1 179 73.2
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.8e-61 239.6 180 61.7
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 1.2e-51 207.6 146 65.1
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 5.8e-51 205.3 133 75.9
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 4.3e-46 189.1 158 63.3
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 6.2e-45 185.3 266 44.0
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 6.2e-45 185.3 266 44.0
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 1.1e-44 184.5 266 44.0
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 4.5e-43 179.1 115 78.3
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 4.5e-43 179.1 153 52.9
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 3.0e-39 166.4 115 72.2
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 1.5e-38 164.1 196 42.9
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 2.8e-29 133.3 89 75.3
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.1e-25 121.3 173 38.2
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 7.2e-25 118.6 76 76.3
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 3.1e-20 103.2 70 71.4
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 7.7e-19 98.6 86 61.6
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.0e-18 98.2 81 63.0
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 3.3e-14 83.2 169 26.6
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 3.3e-14 83.2 66 63.6
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 7.7e-11 72.0 60 58.3
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 1.5e-09 67.8 39 79.5
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 4.7e-08 62.8 45 71.1
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 2.3e-07 60.5 102 36.3


User provided reference genes

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