Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 8.6e-179 630.2 312 100.0
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 1.3e-89 334.0 314 59.6
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 5.0e-86 322.0 313 54.3
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 2.5e-85 319.7 300 56.3
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 1.6e-84 317.0 317 55.5
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 2.3e-83 313.2 307 53.7
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 9.2e-80 301.2 309 51.8
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 3.5e-79 299.3 315 52.4
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 4.5e-79 298.9 309 52.1
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 7.8e-79 298.1 319 52.4
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.3e-78 297.4 316 52.5
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 6.6e-78 295.0 291 57.7
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.5e-77 293.9 333 51.7
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 1.9e-77 293.5 306 51.0
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.9e-77 293.5 316 52.8
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 9.5e-77 291.2 315 52.4
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 2.8e-76 289.7 273 57.1
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 1.4e-75 287.3 306 51.6
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 4.0e-75 285.8 289 56.4
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 2.0e-74 283.5 307 49.8
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 2.6e-74 283.1 320 51.6
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 3.4e-74 282.7 310 49.7
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 4.4e-74 282.3 314 50.0
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 9.8e-74 281.2 319 50.8
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 1.3e-73 280.8 310 51.6
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 2.2e-73 280.0 294 54.8
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 8.3e-73 278.1 307 51.1
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 8.3e-73 278.1 313 48.9
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 1.1e-72 277.7 314 50.0
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.1e-72 277.7 334 50.9
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 2.4e-72 276.6 316 49.1
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 3.2e-72 276.2 307 49.2
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 4.1e-72 275.8 285 55.1
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 5.4e-72 275.4 320 49.7
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 1.2e-71 274.2 265 56.2
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.6e-71 273.9 306 50.0
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 2.0e-71 273.5 310 49.4
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 2.7e-71 273.1 284 54.9
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 5.9e-71 271.9 313 49.5
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 1.0e-70 271.2 314 48.7
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 3.9e-70 269.2 304 52.3
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 3.9e-70 269.2 324 47.2
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.3e-69 265.8 333 49.8
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 4.3e-69 265.8 306 49.0
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.3e-69 265.0 317 50.5
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 7.3e-69 265.0 333 49.8
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 1.2e-68 264.2 319 48.3
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.2e-68 264.2 317 50.5
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 2.1e-68 263.5 290 51.4
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 2.8e-68 263.1 309 48.9
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 2.8e-68 263.1 306 49.0
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 6.2e-68 261.9 307 50.2
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 6.2e-68 261.9 317 50.2
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 8.0e-68 261.5 279 52.3
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 1.0e-67 261.2 309 49.2
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.0e-67 261.2 315 46.7
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 1.4e-67 260.8 315 50.2
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.4e-67 260.8 306 49.0
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 1.8e-67 260.4 309 48.9
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.8e-67 260.4 338 48.8
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 4.0e-67 259.2 306 50.7
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 5.2e-67 258.8 315 46.7
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 1.5e-66 257.3 308 48.4
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.5e-66 257.3 274 52.9
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 2.0e-66 256.9 314 49.0
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 2.0e-66 256.9 302 49.7
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 4.4e-66 255.8 239 56.5
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 7.5e-66 255.0 315 44.8
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 1.7e-65 253.8 310 49.0
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 2.9e-65 253.1 316 46.8
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 2.9e-65 253.1 325 47.1
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 3.7e-65 252.7 308 47.1
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 6.4e-65 251.9 303 49.8
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 1.1e-64 251.1 282 50.4
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 1.9e-64 250.4 281 49.1
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 2.0e-63 246.9 317 44.5
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 3.5e-63 246.1 305 49.5
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 4.6e-63 245.7 280 49.6
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.9e-62 242.7 312 43.6
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 8.6e-62 241.5 317 45.4
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.1e-61 241.1 293 49.1
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 2.5e-61 240.0 315 46.3
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 5.6e-61 238.8 325 45.8
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 7.3e-61 238.4 283 49.1
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 6.2e-60 235.3 219 54.8
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 2.3e-59 233.4 298 49.0
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 5.2e-59 232.3 312 42.9
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 2.0e-58 230.3 312 42.9
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 5.8e-58 228.8 297 48.5
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.7e-57 227.3 294 48.6
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 2.2e-57 226.9 259 52.9
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.2e-57 226.9 294 48.3
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 2.4e-56 223.4 264 49.6
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.2e-55 221.1 281 44.5
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 2.7e-55 219.9 307 44.6
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 1.0e-54 218.0 288 47.2
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 5.1e-54 215.7 268 47.4
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 6.6e-54 215.3 237 48.9
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 1.9e-53 213.8 312 40.7
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.5e-53 213.4 244 50.4
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 4.3e-53 212.6 325 40.6
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 9.5e-53 211.5 270 45.2
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 2.3e-51 206.8 246 50.0
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 8.9e-51 204.9 310 40.6
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 1.2e-50 204.5 312 41.7
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.0e-50 203.8 274 44.9
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 7.6e-50 201.8 279 43.0
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 9.9e-50 201.4 285 46.0
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.3e-49 201.1 272 43.8
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 2.2e-49 200.3 257 44.4
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 2.2e-49 200.3 295 42.0
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 2.9e-49 199.9 278 46.8
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 2.9e-49 199.9 295 41.7
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.9e-49 199.9 255 46.3
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 6.4e-49 198.7 270 44.4
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 8.4e-49 198.4 257 48.2
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 8.4e-49 198.4 284 42.3
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 4.1e-48 196.1 273 44.3
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 4.1e-48 196.1 287 41.8
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 7.1e-48 195.3 262 45.8
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 1.2e-47 194.5 259 46.3
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 1.2e-47 194.5 259 46.3
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 1.6e-47 194.1 297 41.8
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 1.6e-47 194.1 242 46.7
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 1.6e-47 194.1 249 46.6
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 3.5e-47 193.0 283 41.7
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 1.0e-46 191.4 314 40.4
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 3.0e-46 189.9 340 37.9
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 1.1e-45 188.0 313 40.9
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 1.2e-44 184.5 284 41.2
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 1.2e-44 184.5 280 41.1
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 1.6e-44 184.1 242 47.9
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 3.6e-44 183.0 297 42.8
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 8.1e-44 181.8 335 38.2
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 1.1e-43 181.4 304 40.5
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 2.4e-43 180.3 303 42.2
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 3.1e-43 179.9 298 42.3
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 5.2e-43 179.1 304 42.1
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 1.5e-42 177.6 298 41.9
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 1.5e-42 177.6 169 53.8
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 5.8e-42 175.6 279 40.1
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 9.9e-42 174.9 246 42.3
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 1.7e-41 174.1 315 36.5
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 2.2e-41 173.7 250 43.6
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 2.9e-41 173.3 247 44.5
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 2.9e-41 173.3 247 44.5
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.2e-39 167.9 310 35.8
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 2.7e-39 166.8 282 38.7
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 3.5e-39 166.4 232 43.1
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.7e-38 164.1 200 45.5
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 2.3e-38 163.7 278 39.2
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 7.3e-37 158.7 306 35.9
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 1.8e-35 154.1 244 38.9
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 3.1e-35 153.3 334 35.6
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.7e-33 147.5 292 34.2
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.0e-30 138.3 308 34.4
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.0e-30 138.3 298 34.2
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 3.0e-30 136.7 148 47.3
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 2.5e-29 133.7 274 35.0
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 1.6e-28 131.0 282 33.7
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 1.2e-26 124.8 246 36.2
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 1.5e-26 124.4 233 33.9
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 1.5e-26 124.4 237 37.6
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 3.4e-26 123.2 90 63.3
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.3e-25 121.3 260 34.6
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 2.2e-25 120.6 284 28.2
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.6e-20 104.4 184 35.9
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 2.1e-20 104.0 209 35.4
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 3.7e-20 103.2 370 27.3
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 8.2e-20 102.1 239 32.2
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 8.2e-20 102.1 257 30.4
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 4.2e-16 89.7 134 41.0
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 4.6e-15 86.3 253 28.9
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 7.9e-15 85.5 198 31.3
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 1.3e-14 84.7 198 31.3
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 2.5e-13 80.5 64 56.2
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 2.5e-13 80.5 64 56.2
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 3.3e-13 80.1 63 60.3
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 3.3e-13 80.1 63 60.3
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 3.3e-13 80.1 86 47.7
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 7.4e-13 79.0 86 47.7
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.2e-10 71.6 153 32.7
Lj6C572T1 Lonicera japonica HOM05D001925 ORTHO05D004257 3.4e-10 70.1 45 77.8
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 7.6e-10 68.9 90 37.8
SEGI_37364 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 1.0e-06 58.5 59 44.1
Oeu051126.2 Olea europaea HOM05D001925 ORTHO05D004257 8.7e-06 55.5 102 38.2


User provided reference genes

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