Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.4e-90 336.3 167 100.0
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.9e-84 315.8 167 94.0
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 6.9e-74 280.8 168 81.5
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.2e-70 270.0 165 81.2
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 3.5e-70 268.5 168 79.2
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 6.0e-70 267.7 166 79.5
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 7.8e-70 267.3 169 77.5
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 7.8e-70 267.3 168 78.6
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.3e-67 260.0 168 76.2
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.6e-67 259.6 168 76.2
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 1.6e-67 259.6 165 76.4
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 4.8e-67 258.1 165 75.8
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 4.8e-67 258.1 168 75.0
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 6.2e-67 257.7 168 75.6
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.4e-66 256.5 168 73.8
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 2.4e-66 255.8 166 76.5
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 2.4e-66 255.8 168 76.2
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 3.1e-66 255.4 164 74.4
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 4.0e-66 255.0 163 77.3
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 9.0e-66 253.8 168 73.2
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 4.5e-65 251.5 168 74.4
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 4.5e-65 251.5 164 73.2
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 4.5e-65 251.5 168 76.2
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 7.6e-65 250.8 168 73.8
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 9.9e-65 250.4 168 75.6
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 4.9e-64 248.1 168 73.8
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 5.4e-63 244.6 164 72.0
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 7.1e-63 244.2 165 70.3
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 1.2e-62 243.4 168 73.2
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.8e-61 239.6 168 69.0
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.3e-61 239.2 168 68.5
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 2.3e-61 239.2 166 70.5
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 3.0e-61 238.8 163 70.6
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 8.7e-61 237.3 163 69.9
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.9e-60 236.1 163 69.9
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.5e-60 235.7 167 67.7
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 3.3e-60 235.3 162 72.8
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 3.3e-60 235.3 158 74.7
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 5.6e-60 234.6 166 71.1
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 7.4e-60 234.2 162 73.5
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 1.3e-59 233.4 168 70.2
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 1.6e-59 233.0 168 66.1
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 3.7e-59 231.9 163 68.1
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 3.7e-59 231.9 163 68.1
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 4.8e-59 231.5 164 70.1
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 4.8e-59 231.5 166 70.5
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 6.2e-59 231.1 166 69.3
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.8e-58 229.6 164 69.5
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 5.3e-58 228.0 171 69.6
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 6.9e-58 227.6 171 69.6
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 6.9e-58 227.6 171 69.0
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 9.0e-58 227.3 155 74.2
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.5e-57 226.5 169 68.0
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 2.0e-57 226.1 172 68.0
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.6e-57 225.7 165 67.9
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 4.5e-57 224.9 163 70.6
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 2.2e-56 222.6 168 66.7
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 3.8e-56 221.9 168 67.3
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 2.4e-55 219.2 168 66.1
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.4e-55 219.2 166 68.1
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 3.2e-55 218.8 164 67.1
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 4.2e-55 218.4 164 67.7
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 5.5e-55 218.0 162 69.1
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 7.1e-55 217.6 163 69.9
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 7.1e-55 217.6 168 63.7
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 9.3e-55 217.2 164 65.2
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.6e-54 216.5 163 69.9
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.1e-54 216.1 166 65.7
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 4.6e-54 214.9 163 68.7
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 4.6e-54 214.9 163 68.7
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.0e-53 213.8 172 61.6
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.3e-53 213.4 167 65.3
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.3e-53 213.4 167 65.3
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.8e-53 213.0 168 62.5
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 2.3e-53 212.6 164 65.9
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 2.3e-53 212.6 163 69.3
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.0e-53 212.2 163 68.1
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.9e-53 211.8 172 64.0
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 5.1e-53 211.5 164 70.1
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 8.7e-53 210.7 166 64.5
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 8.7e-53 210.7 167 62.9
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.1e-52 210.3 164 68.9
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.5e-52 209.9 172 62.8
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.5e-52 209.9 171 61.4
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.5e-52 209.1 168 61.3
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 7.4e-52 207.6 158 67.7
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 7.4e-52 207.6 171 63.7
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.3e-51 206.8 172 63.4
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.3e-51 206.8 172 64.0
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.6e-51 206.5 167 61.1
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.1e-51 206.1 166 63.3
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 2.8e-51 205.7 168 61.9
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 4.8e-51 204.9 174 60.9
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 8.2e-51 204.1 167 61.7
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 2.4e-50 202.6 173 62.4
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 3.1e-50 202.2 167 62.3
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 3.1e-50 202.2 167 62.3
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 4.0e-50 201.8 167 62.3
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 4.0e-50 201.8 167 62.3
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 1.5e-49 199.9 167 61.7
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 5.8e-49 198.0 165 60.0
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 7.6e-49 197.6 162 61.7
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.0e-48 197.2 168 63.1
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 1.3e-48 196.8 131 72.5
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 2.9e-48 195.7 157 62.4
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 4.9e-48 194.9 161 59.6
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 2.5e-47 192.6 172 58.1
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 3.2e-47 192.2 171 63.2
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 6.7e-45 184.5 166 58.4
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 6.7e-45 184.5 166 58.4
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.3e-44 182.2 170 59.4
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.6e-43 179.9 158 57.6
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.2e-43 179.5 170 58.8
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.2e-43 179.5 170 58.8
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 2.2e-43 179.5 125 71.2
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.8e-43 179.1 126 68.3
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 1.1e-42 177.2 168 57.1
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.2e-41 173.7 162 56.2
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.2e-41 173.7 136 66.2
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 4.5e-41 171.8 127 73.2
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.7e-40 169.9 123 65.9
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 9.3e-39 164.1 164 53.7
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.1e-37 158.3 128 63.3
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 2.8e-35 152.5 130 59.2
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.4e-34 150.2 112 66.1
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.2e-33 147.1 167 49.1
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.5e-33 146.7 119 65.5
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 1.7e-32 143.3 124 62.1
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.7e-32 143.3 124 55.6
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 2.9e-32 142.5 172 49.4
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 7.2e-31 137.9 95 68.4
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 6.1e-30 134.8 161 43.5
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 6.1e-30 134.8 147 44.2
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.4e-29 133.7 156 44.2
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.4e-29 133.7 155 47.7
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 5.7e-28 128.3 158 41.8
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 2.4e-26 122.9 80 76.2
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 2.6e-25 119.4 133 45.1
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.2e-24 116.3 89 64.0
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 3.2e-23 112.5 120 43.3
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.2e-22 110.5 163 42.9
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 2.1e-22 109.8 164 37.2
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 5.2e-21 105.1 144 42.4
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 8.8e-21 104.4 66 72.7
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.8e-19 98.6 66 74.2
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 6.3e-19 98.2 61 77.0
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 5.9e-17 91.7 68 69.1
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 2.2e-16 89.7 71 57.7
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.8e-16 89.0 61 72.1
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.0e-16 88.6 68 67.6
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.0e-16 88.6 68 67.6
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.1e-14 83.2 76 59.2
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 6.1e-14 81.6 53 75.5
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 8.0e-14 81.3 62 62.9
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 6.7e-13 78.2 80 51.2
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 1.2e-12 77.4 115 38.3
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 1.2e-12 77.4 63 54.0
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 5.7e-12 75.1 76 43.4
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 8.2e-11 71.2 81 50.6
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 9.1e-10 67.8 96 43.8
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 9.1e-10 67.8 44 72.7
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 5.9e-09 65.1 60 58.3
AUR62010916 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.7e-06 56.2 42 64.3
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 3.6e-06 55.8 118 33.1
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 6.1e-06 55.1 63 39.7
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 8.0e-06 54.7 80 36.2


User provided reference genes

Program Settings