Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 5.3e-75 284.3 142 100.0
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.1e-67 260.0 142 88.0
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.4e-67 259.6 142 88.0
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 4.0e-67 258.1 142 86.6
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 5.3e-67 257.7 142 89.4
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 5.8e-66 254.2 141 85.8
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 2.9e-65 251.9 142 85.9
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 4.9e-65 251.1 142 85.9
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 4.9e-65 251.1 142 86.6
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 1.4e-64 249.6 141 85.1
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 1.4e-64 249.6 141 87.2
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 2.5e-64 248.8 148 83.8
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 3.2e-64 248.4 140 87.1
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.2e-64 248.1 138 86.2
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 2.7e-63 245.4 140 85.0
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 3.5e-63 245.0 135 86.7
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 4.6e-63 244.6 143 85.3
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 6.0e-63 244.2 135 87.4
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 1.0e-62 243.4 139 84.2
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 5.1e-62 241.1 139 82.7
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 5.1e-62 241.1 138 84.1
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 1.5e-61 239.6 148 81.1
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 3.3e-61 238.4 139 83.5
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 4.3e-61 238.0 139 84.2
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 5.7e-61 237.7 138 81.9
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 9.7e-61 236.9 137 81.8
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 2.8e-60 235.3 140 79.3
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 3.1e-59 231.9 140 79.3
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 6.9e-59 230.7 140 80.0
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 6.9e-59 230.7 177 67.8
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 9.0e-59 230.3 142 79.6
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 1.5e-58 229.6 136 82.4
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.5e-58 229.6 137 78.8
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 2.0e-58 229.2 140 79.3
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 2.0e-58 229.2 138 78.3
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 2.6e-58 228.8 140 75.7
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 3.4e-58 228.4 140 80.0
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 5.9e-58 227.6 138 79.7
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 1.0e-57 226.9 142 78.2
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.9e-57 225.3 136 79.4
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 2.9e-57 225.3 136 79.4
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 2.9e-57 225.3 140 78.6
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 2.9e-57 225.3 183 63.9
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 3.8e-57 224.9 135 80.0
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 8.5e-57 223.8 139 79.9
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 1.1e-56 223.4 179 64.8
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.1e-56 223.4 136 80.1
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 1.4e-56 223.0 133 82.0
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 2.5e-56 222.2 139 77.0
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 2.5e-56 222.2 138 79.0
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 3.2e-56 221.9 137 81.8
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 4.2e-56 221.5 143 76.9
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 4.2e-56 221.5 139 79.1
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 4.2e-56 221.5 135 80.0
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 5.5e-56 221.1 137 78.1
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 9.3e-56 220.3 134 80.6
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.6e-55 219.5 133 80.5
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 1.6e-55 219.5 138 78.3
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.1e-55 219.2 138 77.5
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 2.1e-55 219.2 138 77.5
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 2.1e-55 219.2 135 78.5
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 2.1e-55 219.2 169 66.3
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 2.1e-55 219.2 132 81.1
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 2.7e-55 218.8 132 79.5
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 2.7e-55 218.8 140 78.6
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 3.6e-55 218.4 131 79.4
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 4.6e-55 218.0 135 79.3
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 6.1e-55 217.6 137 81.0
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.0e-54 216.9 139 74.8
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.0e-54 216.9 133 78.2
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 1.0e-54 216.9 140 75.7
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 2.3e-54 215.7 133 77.4
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 2.3e-54 215.7 133 77.4
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 2.3e-54 215.7 133 77.4
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 3.9e-54 214.9 136 76.5
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 3.9e-54 214.9 139 75.5
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 5.1e-54 214.5 140 75.7
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 6.7e-54 214.2 140 75.7
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 6.7e-54 214.2 136 75.7
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 8.7e-54 213.8 138 75.4
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 8.7e-54 213.8 136 75.7
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 8.7e-54 213.8 136 75.7
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 8.7e-54 213.8 136 75.7
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 1.5e-53 213.0 130 80.0
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 1.5e-53 213.0 130 80.0
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 1.5e-53 213.0 130 80.0
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 1.5e-53 213.0 130 80.0
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 1.5e-53 213.0 138 76.1
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.5e-53 213.0 138 76.1
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 1.9e-53 212.6 138 75.4
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.9e-53 212.6 148 75.7
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 3.3e-53 211.8 140 75.0
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 4.3e-53 211.5 133 78.9
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.6e-52 209.5 148 75.0
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.2e-52 209.1 148 74.3
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 3.7e-52 208.4 141 73.0
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 3.7e-52 208.4 141 73.8
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 4.8e-52 208.0 128 79.7
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.8e-52 208.0 151 72.8
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 2.4e-51 205.7 138 73.2
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 3.1e-51 205.3 130 78.5
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 3.1e-51 205.3 130 78.5
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 4.1e-51 204.9 114 86.8
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 5.3e-51 204.5 139 71.9
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 6.9e-51 204.1 133 74.4
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 9.1e-51 203.8 132 81.1
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.0e-50 202.6 113 87.6
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 3.4e-50 201.8 139 71.9
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 5.9e-50 201.1 135 74.8
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 5.0e-49 198.0 117 81.2
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 5.0e-49 198.0 117 81.2
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 5.0e-49 198.0 139 71.9
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 6.5e-49 197.6 216 52.8
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.1e-48 196.8 136 71.3
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 1.9e-48 196.1 105 90.5
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 2.5e-48 195.7 135 72.6
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 3.2e-48 195.3 121 79.3
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 3.2e-48 195.3 139 71.2
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 5.5e-48 194.5 105 89.5
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 7.2e-48 194.1 117 78.6
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 1.6e-47 193.0 135 72.6
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 7.9e-47 190.7 102 90.2
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 1.4e-46 189.9 154 68.2
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 3.9e-46 188.3 133 69.2
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 1.5e-45 186.4 138 69.6
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 3.7e-44 181.8 209 51.7
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 3.1e-43 178.7 156 60.3
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 3.1e-43 178.7 97 90.7
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 7.7e-42 174.1 116 79.3
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 2.9e-41 172.2 182 53.3
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.0e-37 159.5 95 81.1
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 5.7e-37 157.9 141 51.8
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 5.7e-37 157.9 78 100.0
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 2.8e-36 155.6 140 55.0
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 3.7e-36 155.2 94 76.6
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 2.6e-34 149.1 111 71.2
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 4.5e-34 148.3 94 77.7
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 5.7e-29 131.3 99 65.7
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 1.3e-28 130.2 84 75.0
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 2.8e-28 129.0 135 48.9
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.1e-27 125.2 73 78.1
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 1.1e-24 117.1 64 87.5
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 7.5e-21 104.4 66 77.3
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 2.2e-20 102.8 94 54.3
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 8.3e-20 100.9 108 50.0
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.5e-18 95.5 61 73.8
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 1.0e-17 94.0 105 46.7
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 1.0e-17 94.0 62 77.4
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 2.8e-15 85.9 95 50.5
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 6.1e-15 84.7 57 64.9
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.1e-11 73.9 35 94.3
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 4.5e-10 68.6 52 65.4
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 1.7e-09 66.6 102 37.3
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 8.6e-09 64.3 123 32.5
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 2.5e-08 62.8 35 74.3
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 3.3e-08 62.4 67 52.2
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.1e-07 59.7 83 44.6
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 8.0e-07 57.8 83 39.8
EL10Ac4g08132 Beta vulgaris HOM05D003936 ORTHO05D004747 1.4e-06 57.0 44 59.1
EL10Ac4g08139 Beta vulgaris HOM05D003936 ORTHO05D004747 1.4e-06 57.0 44 59.1
EL10Ac4g09849 Beta vulgaris HOM05D003936 ORTHO05D004747 1.4e-06 57.0 44 59.1


User provided reference genes

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